NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1APXC-1AESA
confEVID 1APXC-1AESA
pdbIDA 1APX
pdbIDB 1AES
pdbChainA C
pdbChainB A
identity 0.317499995231628
indelSize 3
alignment <alignment>
<seq1>----GKSYPTVSPDYQKAIEKAKRKLRGFIAEKK-------CAPLILRLAWHSAGTFDSKTKTGGPF-GTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLT---------------GEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA-----------------</seq1>
<seq2>LVHVASVEKGRSYEDFQK---VYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGITFPKDAPSPFIFKTLEEQGL</seq2>
<ss_1>---- HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHH - GGG HHHH GGG HHHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHHIIIIII HHHHHHHGGGGG EEE HHHHHHH --------------- HHHH HHHHHHHHH HHHHHHHHHHHHHHHH -----------------</ss_1>
<ss_2> HHHHHH---HHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH- HHHHHHGGGGGG HHHH HHHHHHHH EEEEEEE EEEEEE EEE GGG HHHHHHHHH HHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1APXC</entryIDChain>
<sequence>REDKP--EPPPE</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 4731 CA ARG C 119 32.688 6.450 70.462 1.00 14.72 C </line>
<line>ATOM 4742 CA GLU C 120 34.943 8.488 72.710 1.00 22.88 C </line>
<line>ATOM 4751 CA ASP C 121 36.104 11.959 71.720 1.00 14.29 C </line>
<line>ATOM 4759 CA LYS C 122 39.768 12.610 70.946 1.00 22.43 C </line>
<line>ATOM 4768 CA PRO C 123 41.896 15.672 71.832 1.00 23.41 C </line>
<line>ATOM 4775 CA GLU C 124 44.069 16.039 68.701 1.00 30.42 C </line>
<line>ATOM 4784 CA PRO C 125 42.785 16.342 65.082 1.00 25.49 C </line>
<line>ATOM 4791 CA PRO C 126 44.586 14.291 62.395 1.00 25.58 C </line>
<line>ATOM 4798 CA PRO C 127 47.061 15.890 59.941 1.00 21.75 C </line>
<line>ATOM 4805 CA GLU C 128 45.683 17.510 56.789 1.00 24.24 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO PRO PRO GLU PRO LYS ASP GLU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.87 20.16 16.37 15.12 14.99 13.10 9.40 6.60 3.78 </line>
<line>GLU CA 21.22 19.10 15.27 13.47 12.50 10.04 6.59 3.79 </line>
<line>ASP CA 18.59 16.56 12.82 10.39 9.44 6.88 3.80 </line>
<line>LYS CA 16.11 13.60 9.96 7.58 5.94 3.83 </line>
<line>PRO CA 15.62 12.97 9.91 6.84 3.83 </line>
<line>GLU CA 12.11 9.26 6.56 3.85 </line>
<line>PRO CA 8.86 6.70 3.83 </line>
<line>PRO CA 6.56 3.83 </line>
<line>PRO CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ARG CA 400</line>
<line>GLU CA 327</line>
<line>ASP CA 318</line>
<line>LYS CA 286</line>
<line>PRO CA 200</line>
<line>GLU CA 229</line>
<line>PRO CA 311</line>
<line>PRO CA 325</line>
<line>PRO CA 262</line>
<line>GLU CA 256</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AES</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AESA</entryIDChain>
<sequence>RVDTPEDTTPDN</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 1231 CA ARG A 130 6.750 91.531 62.083 1.00 11.31 C </line>
<line>ATOM 1248 CA VAL A 131 4.941 94.474 63.661 1.00 9.12 C </line>
<line>ATOM 1256 CA ASP A 132 5.790 98.150 63.221 1.00 16.04 C </line>
<line>ATOM 1265 CA THR A 133 6.979 99.577 66.513 1.00 18.98 C </line>
<line>ATOM 1274 CA PRO A 134 7.241 103.349 67.573 1.00 20.67 C </line>
<line>ATOM 1281 CA GLU A 135 10.092 105.857 66.663 1.00 28.07 C </line>
<line>ATOM 1291 CA ASP A 136 11.595 105.602 70.157 1.00 29.85 C </line>
<line>ATOM 1300 CA THR A 137 12.280 101.834 69.649 1.00 23.39 C </line>
<line>ATOM 1309 CA THR A 138 14.693 102.741 66.764 1.00 25.80 C </line>
<line>ATOM 1318 CA PRO A 139 18.285 101.531 67.637 1.00 20.57 C </line>
<line>ATOM 1325 CA ASP A 140 21.065 104.125 67.886 1.00 19.76 C </line>
<line>ATOM 1334 CA ASN A 141 23.711 104.434 65.130 1.00 20.82 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASP PRO THR THR ASP GLU PRO THR ASP VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.53 19.93 16.25 14.51 13.93 16.93 15.41 13.04 9.19 6.78 3.80 </line>
<line>VAL CA 21.30 19.26 15.61 13.16 12.00 14.50 12.85 9.97 6.19 3.80 </line>
<line>ASP CA 19.09 17.05 13.68 10.63 9.85 11.72 9.47 6.93 3.78 </line>
<line>THR CA 17.48 14.87 11.53 8.34 6.56 8.42 7.01 3.93 </line>
<line>PRO CA 16.69 13.85 11.19 7.52 5.66 5.54 3.90 </line>
<line>GLU CA 13.78 11.18 9.32 5.56 5.47 3.81 </line>
<line>ASP CA 13.17 9.85 8.23 5.41 3.86 </line>
<line>THR CA 12.56 9.25 6.34 3.87 </line>
<line>THR CA 9.32 6.62 3.89 </line>
<line>PRO CA 6.64 3.81 </line>
<line>ASP CA 3.83 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 535</line>
<line>VAL CA 452</line>
<line>ASP CA 405</line>
<line>THR CA 353</line>
<line>PRO CA 252</line>
<line>GLU CA 267</line>
<line>ASP CA 236</line>
<line>THR CA 350</line>
<line>THR CA 419</line>
<line>PRO CA 429</line>
<line>ASP CA 333</line>
<line>ASN CA 337</line>
</n14>
</entryChain>
<parallel>
<x>29.985000610351562</x>
<y>-86.41699981689453</y>
<z>3.3429999351501465</z>
</parallel>
<rotation>
<x>0.3140000104904175</x>
<y>0.02500000037252903</y>
<z>-0.9490000009536743</z>
<x>0.23199999332427979</x>
<y>0.9670000076293945</y>
<z>0.10199999809265137</z>
<x>0.9210000038146973</x>
<y>-0.2529999911785126</y>
<z>0.2980000078678131</z>
</rotation>
<rmsd>0.9540359973907471</rmsd>
<dmax>1.7637250423431396</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AES</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AESA</entryIDChain>
<sequence>EDFQK---VYNAI</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 125 CA GLU A 17 -1.447 83.688 48.461 1.00 18.54 C </line>
<line>ATOM 135 CA ASP A 18 -1.335 87.298 49.749 1.00 15.24 C </line>
<line>ATOM 144 CA PHE A 19 2.473 87.230 50.376 1.00 15.19 C </line>
<line>ATOM 156 CA GLN A 20 3.121 85.525 46.973 1.00 15.44 C </line>
<line>ATOM 168 CA LYS A 21 1.418 88.559 45.256 1.00 17.77 C </line>
<line>ATOM 181 CA VAL A 22 3.772 90.935 47.170 1.00 11.99 C </line>
<line>ATOM 189 CA TYR A 23 6.751 88.654 46.170 1.00 13.16 C </line>
<line>ATOM 203 CA ASN A 24 5.628 88.712 42.469 1.00 10.19 C </line>
<line>ATOM 214 CA ALA A 25 5.194 92.485 42.572 1.00 12.82 C </line>
<line>ATOM 220 CA ILE A 26 8.793 92.893 43.845 1.00 12.91 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASN TYR VAL LYS GLN PHE ASP GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.52 12.50 10.55 9.85 9.02 6.50 5.14 5.62 3.83 </line>
<line>ASP CA 12.99 11.00 10.17 8.95 6.78 5.42 5.54 3.86 </line>
<line>PHE CA 10.71 9.79 8.64 6.17 5.07 5.39 3.86 </line>
<line>GLN CA 9.81 8.49 6.06 4.86 5.45 3.88 </line>
<line>LYS CA 8.67 6.07 5.05 5.41 3.85 </line>
<line>VAL CA 6.33 5.06 5.52 3.88 </line>
<line>TYR CA 5.25 5.48 3.87 </line>
<line>ASN CA 5.42 3.80 </line>
<line>ALA CA 3.84 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLU CA 318</line>
<line>ASP CA 376</line>
<line>PHE CA 516</line>
<line>GLN CA 475</line>
<line>LYS CA 437</line>
<line>VAL CA 528</line>
<line>TYR CA 617</line>
<line>ASN CA 474</line>
<line>ALA CA 472</line>
<line>ILE CA 547</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1APXC</entryIDChain>
<sequence>DYQKAIEKAKRKL</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3899 CA ASP C 11 20.924 7.085 80.219 1.00 14.26 C </line>
<line>ATOM 3907 CA TYR C 12 23.323 7.351 77.259 1.00 11.60 C </line>
<line>ATOM 3919 CA GLN C 13 20.953 5.162 75.264 1.00 12.97 C </line>
<line>ATOM 3928 CA LYS C 14 17.962 7.399 76.011 1.00 11.56 C </line>
<line>ATOM 3937 CA ALA C 15 19.971 10.466 74.990 1.00 10.08 C </line>
<line>ATOM 3942 CA ILE C 16 20.884 8.855 71.665 1.00 8.95 C </line>
<line>ATOM 3950 CA GLU C 17 17.255 7.899 70.891 1.00 13.24 C </line>
<line>ATOM 3959 CA LYS C 18 16.024 11.378 71.833 1.00 16.49 C </line>
<line>ATOM 3968 CA ALA C 19 18.857 13.055 69.918 1.00 8.69 C </line>
<line>ATOM 3973 CA LYS C 20 17.936 11.065 66.813 1.00 4.40 C </line>
<line>ATOM 3982 CA ARG C 21 14.389 12.417 66.819 1.00 10.17 C </line>
<line>ATOM 3993 CA LYS C 22 15.661 15.955 67.340 1.00 11.86 C </line>
<line>ATOM 4002 CA LEU C 23 18.055 15.563 64.415 1.00 8.18 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS ARG LYS ALA LYS GLU ILE ALA LYS GLN TYR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 18.16 16.50 15.83 14.30 12.08 10.62 10.06 8.74 6.30 5.16 5.32 3.82 </line>
<line>TYR CA 16.13 15.20 14.64 12.33 10.31 9.95 8.81 6.29 5.11 5.50 3.79 </line>
<line>GLN CA 15.31 14.40 12.92 10.74 9.76 8.64 6.35 5.16 5.40 3.81 </line>
<line>LYS CA 14.18 12.40 11.07 9.90 8.36 6.09 5.19 5.44 3.81 </line>
<line>ALA CA 11.89 10.36 10.09 8.45 5.80 5.14 5.55 3.81 </line>
<line>ILE CA 10.27 9.82 8.85 6.09 4.98 5.48 3.83 </line>
<line>GLU CA 10.07 8.95 6.72 5.21 5.49 3.81 </line>
<line>LYS CA 8.76 6.42 5.38 5.38 3.81 </line>
<line>ALA CA 6.10 5.03 5.47 3.80 </line>
<line>LYS CA 5.10 5.42 3.80 </line>
<line>ARG CA 5.40 3.80 </line>
<line>LYS CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASP CA 170</line>
<line>TYR CA 262</line>
<line>GLN CA 255</line>
<line>LYS CA 224</line>
<line>ALA CA 284</line>
<line>ILE CA 364</line>
<line>GLU CA 303</line>
<line>LYS CA 275</line>
<line>ALA CA 370</line>
<line>LYS CA 379</line>
<line>ARG CA 271</line>
<line>LYS CA 308</line>
<line>LEU CA 397</line>
</n14>
</entryChain>
<parallel>
<x>-16.742000579833984</x>
<y>78.32499694824219</y>
<z>-26.333999633789062</z>
</parallel>
<rotation>
<x>-0.38100001215934753</x>
<y>0.5879999995231628</y>
<z>0.7139999866485596</z>
<x>-0.33399999141693115</x>
<y>0.6320000290870667</y>
<z>-0.6990000009536743</z>
<x>-0.8619999885559082</x>
<y>-0.5040000081062317</y>
<z>-0.04399999976158142</z>
</rotation>
<rmsd>2.5693769454956055</rmsd>
<dmax>3.7441399097442627</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1AES</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AESA</entryIDChain>
<sequence>VRTFF-QRLNM</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 1454 CA VAL A 154 34.449 89.916 62.534 1.00 17.57 C </line>
<line>ATOM 1462 CA ARG A 155 34.255 86.875 64.897 1.00 19.06 C </line>
<line>ATOM 1479 CA THR A 156 33.546 89.137 67.880 1.00 19.16 C </line>
<line>ATOM 1488 CA PHE A 157 31.068 91.361 66.062 1.00 19.01 C </line>
<line>ATOM 1500 CA PHE A 158 28.976 88.375 64.869 1.00 19.20 C </line>
<line>ATOM 1512 CA GLN A 159 28.761 86.950 68.385 1.00 19.77 C </line>
<line>ATOM 1524 CA ARG A 160 26.295 89.791 69.235 1.00 15.49 C </line>
<line>ATOM 1541 CA LEU A 161 23.966 88.460 66.481 1.00 16.48 C </line>
<line>ATOM 1550 CA ASN A 162 24.910 84.917 67.517 1.00 15.45 C </line>
<line>ATOM 1561 CA MET A 163 26.394 83.734 64.459 1.00 12.84 C </line>
</atom-coordinate>
<distance-map>
<line> MET ASN LEU ARG GLN PHE PHE THR ARG VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 10.33 11.87 11.30 10.55 8.68 6.15 5.10 5.48 3.86 </line>
<line>ARG CA 8.48 9.90 10.53 9.52 6.51 5.49 5.62 3.81 </line>
<line>THR CA 9.59 9.62 9.71 7.41 5.29 5.53 3.79 </line>
<line>PHE CA 9.09 9.03 7.68 5.94 5.49 3.84 </line>
<line>PHE CA 5.33 5.96 5.26 5.32 3.80 </line>
<line>GLN CA 5.60 4.44 5.38 3.86 </line>
<line>ARG CA 7.71 5.35 3.84 </line>
<line>LEU CA 5.68 3.81 </line>
<line>ASN CA 3.60 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>VAL CA 450</line>
<line>ARG CA 413</line>
<line>THR CA 347</line>
<line>PHE CA 432</line>
<line>PHE CA 484</line>
<line>GLN CA 365</line>
<line>ARG CA 383</line>
<line>LEU CA 471</line>
<line>ASN CA 403</line>
<line>MET CA 452</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1APXC</entryIDChain>
<sequence>LRDVFGKAMGL</sequence>
<secondary-structure>HHIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 4901 CA LEU C 141 40.802 6.416 45.462 1.00 17.70 C </line>
<line>ATOM 4909 CA ARG C 142 42.301 3.046 46.333 1.00 14.72 C </line>
<line>ATOM 4920 CA ASP C 143 45.162 4.752 48.186 1.00 14.89 C </line>
<line>ATOM 4928 CA VAL C 144 42.817 6.756 50.416 1.00 13.64 C </line>
<line>ATOM 4935 CA PHE C 145 39.907 4.284 50.764 1.00 14.61 C </line>
<line>ATOM 4946 CA GLY C 146 41.773 0.997 50.463 1.00 18.91 C </line>
<line>ATOM 4950 CA LYS C 147 45.246 1.658 51.867 1.00 25.33 C </line>
<line>ATOM 4959 CA ALA C 148 44.523 4.266 54.517 1.00 16.95 C </line>
<line>ATOM 4964 CA MET C 149 40.927 3.465 55.556 1.00 13.35 C </line>
<line>ATOM 4972 CA GLY C 150 41.078 -0.260 54.848 1.00 6.38 C </line>
<line>ATOM 4976 CA LEU C 151 37.840 -0.272 52.820 1.00 15.26 C </line>
</atom-coordinate>
<distance-map>
<line> LEU GLY MET ALA LYS GLY PHE VAL ASP ARG LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 10.38 11.52 10.52 10.02 9.13 7.44 5.78 5.36 5.40 3.79 </line>
<line>ARG CA 8.54 9.22 9.33 8.57 6.42 4.64 5.19 5.54 3.81 </line>
<line>ASP CA 10.02 9.28 8.60 6.38 4.81 5.55 5.87 3.81 </line>
<line>VAL CA 8.94 8.48 6.39 5.09 5.83 5.85 3.83 </line>
<line>PHE CA 5.41 6.22 4.97 5.95 6.05 3.79 </line>
<line>GLY CA 4.76 4.61 5.72 5.89 3.80 </line>
<line>LYS CA 7.71 5.47 5.96 3.79 </line>
<line>ALA CA 8.25 5.70 3.83 </line>
<line>MET CA 5.57 3.79 </line>
<line>GLY CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 365</line>
<line>ARG CA 315</line>
<line>ASP CA 272</line>
<line>VAL CA 363</line>
<line>PHE CA 406</line>
<line>GLY CA 315</line>
<line>LYS CA 258</line>
<line>ALA CA 315</line>
<line>MET CA 382</line>
<line>GLY CA 324</line>
<line>LEU CA 368</line>
</n14>
</entryChain>
<parallel>
<x>-12.545999526977539</x>
<y>84.52799987792969</y>
<z>15.904999732971191</z>
</parallel>
<rotation>
<x>0.30799999833106995</x>
<y>0.09099999815225601</y>
<z>0.9470000267028809</z>
<x>0.13099999725818634</x>
<y>0.9819999933242798</y>
<z>-0.13699999451637268</z>
<x>-0.9419999718666077</x>
<y>0.16599999368190765</y>
<z>0.28999999165534973</z>
</rotation>
<rmsd>0.7597230076789856</rmsd>
<dmax>1.2125639915466309</dmax>
</indel>