NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1APXC-5CCPA
confEVID 1APXC-5CCPA
pdbIDA 1APX
pdbIDB 5CCP
pdbChainA C
pdbChainB A
identity 0.313899993896484
indelSize 3
alignment <alignment>
<seq1>----GKSYPTVSPDYQKAIEKAKRKLRGFIAEKK-------CAPLILRLAWHSAGTFDSKTKTGGPF-GTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKP--EPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKD---------------GLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA-----------------</seq1>
<seq2>LVHVASVEKGRSYEDFQK---VYNAIALKLREDDEYDNYIGYGPVLVRLAWLISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ-RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGITFPKDAPSPFIFKTLEEQGL</seq2>
<ss_1>---- HHHHHHHHHHHHHHHHHHHH ------- HHHHHHHHHHHH - GGG HHHH GGG HHHHHHHHHHHGGG HHHHHHHHHHHHHHH -- HHHHHIIIIII HHHHHHHGGGGG EEE HHHHHHH --------------- HHHH HHHHHHHHH HHHHHHHHHHHHHHHH -----------------</ss_1>
<ss_2> HHHHHH---HHHHHHHHHHH HHHHHHHHHHHH GGG HHHH HHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHH - HHHHHHGGGGGG EEE HHHH HHHHHHHH EEEEEEE EEEEEE EEE HHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1APXC</entryIDChain>
<sequence>REDKP--EPPPE</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 4731 CA ARG C 119 32.688 6.450 70.462 1.00 14.72 C </line>
<line>ATOM 4742 CA GLU C 120 34.943 8.488 72.710 1.00 22.88 C </line>
<line>ATOM 4751 CA ASP C 121 36.104 11.959 71.720 1.00 14.29 C </line>
<line>ATOM 4759 CA LYS C 122 39.768 12.610 70.946 1.00 22.43 C </line>
<line>ATOM 4768 CA PRO C 123 41.896 15.672 71.832 1.00 23.41 C </line>
<line>ATOM 4775 CA GLU C 124 44.069 16.039 68.701 1.00 30.42 C </line>
<line>ATOM 4784 CA PRO C 125 42.785 16.342 65.082 1.00 25.49 C </line>
<line>ATOM 4791 CA PRO C 126 44.586 14.291 62.395 1.00 25.58 C </line>
<line>ATOM 4798 CA PRO C 127 47.061 15.890 59.941 1.00 21.75 C </line>
<line>ATOM 4805 CA GLU C 128 45.683 17.510 56.789 1.00 24.24 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO PRO PRO GLU PRO LYS ASP GLU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.87 20.16 16.37 15.12 14.99 13.10 9.40 6.60 3.78 </line>
<line>GLU CA 21.22 19.10 15.27 13.47 12.50 10.04 6.59 3.79 </line>
<line>ASP CA 18.59 16.56 12.82 10.39 9.44 6.88 3.80 </line>
<line>LYS CA 16.11 13.60 9.96 7.58 5.94 3.83 </line>
<line>PRO CA 15.62 12.97 9.91 6.84 3.83 </line>
<line>GLU CA 12.11 9.26 6.56 3.85 </line>
<line>PRO CA 8.86 6.70 3.83 </line>
<line>PRO CA 6.56 3.83 </line>
<line>PRO CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ARG CA 400</line>
<line>GLU CA 327</line>
<line>ASP CA 318</line>
<line>LYS CA 286</line>
<line>PRO CA 200</line>
<line>GLU CA 229</line>
<line>PRO CA 311</line>
<line>PRO CA 325</line>
<line>PRO CA 262</line>
<line>GLU CA 256</line>
</n14>
</entryChain>
<entryChain>
<pdbID>5CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5CCPA</entryIDChain>
<sequence>RVDTPEDTTPDN</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 996 CA ARG A 130 15.736 65.192 17.347 1.00 14.87 C </line>
<line>ATOM 1007 CA VAL A 131 17.996 65.902 20.250 1.00 18.69 C </line>
<line>ATOM 1014 CA ASP A 132 17.869 64.587 23.695 1.00 26.05 C </line>
<line>ATOM 1022 CA THR A 133 17.225 67.373 26.157 1.00 34.05 C </line>
<line>ATOM 1029 CA PRO A 134 17.506 67.590 29.869 1.00 35.45 C </line>
<line>ATOM 1036 CA GLU A 135 15.125 66.136 32.339 1.00 45.64 C </line>
<line>ATOM 1045 CA ASP A 136 14.070 69.615 33.264 1.00 34.30 C </line>
<line>ATOM 1053 CA THR A 137 12.574 70.161 29.805 1.00 31.77 C </line>
<line>ATOM 1060 CA THR A 138 10.163 67.368 30.556 1.00 49.24 C </line>
<line>ATOM 1067 CA PRO A 139 6.584 68.678 30.190 1.00 33.77 C </line>
<line>ATOM 1074 CA ASP A 140 4.240 68.469 33.134 1.00 34.98 C </line>
<line>ATOM 1082 CA ASN A 141 1.479 65.862 32.978 1.00 41.02 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASP PRO THR THR ASP GLU PRO THR ASP VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 21.17 19.80 16.15 14.50 13.78 16.60 15.03 12.87 9.20 6.72 3.75 </line>
<line>VAL CA 20.85 19.02 15.39 13.03 11.78 14.09 12.43 9.78 6.14 3.69 </line>
<line>ASP CA 18.88 17.03 13.65 10.69 9.82 11.46 9.20 6.88 3.77 </line>
<line>THR CA 17.23 14.78 11.45 8.32 6.54 8.09 6.65 3.73 </line>
<line>PRO CA 16.42 13.69 10.98 7.38 5.56 5.24 3.73 </line>
<line>GLU CA 13.66 11.16 9.17 5.41 5.40 3.75 </line>
<line>ASP CA 13.14 9.90 8.15 5.26 3.81 </line>
<line>THR CA 12.31 9.13 6.18 3.77 </line>
<line>THR CA 9.14 6.55 3.83 </line>
<line>PRO CA 6.46 3.77 </line>
<line>ASP CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 454</line>
<line>VAL CA 385</line>
<line>ASP CA 341</line>
<line>THR CA 293</line>
<line>PRO CA 211</line>
<line>GLU CA 222</line>
<line>ASP CA 191</line>
<line>THR CA 285</line>
<line>THR CA 336</line>
<line>PRO CA 351</line>
<line>ASP CA 279</line>
<line>ASN CA 280</line>
</n14>
</entryChain>
<parallel>
<x>25.148000717163086</x>
<y>-54.375</y>
<z>43.24700164794922</z>
</parallel>
<rotation>
<x>-0.18400000035762787</x>
<y>0.10400000214576721</y>
<z>0.9769999980926514</z>
<x>0.8489999771118164</x>
<y>-0.48399999737739563</y>
<z>0.21199999749660492</z>
<x>0.4950000047683716</x>
<y>0.8690000176429749</y>
<z>0.0010000000474974513</z>
</rotation>
<rmsd>0.9646490216255188</rmsd>
<dmax>1.823783040046692</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>5CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5CCPA</entryIDChain>
<sequence>EDFQK---VYNAI</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 102 CA GLU A 17 21.361 53.816 5.254 1.00 20.36 C </line>
<line>ATOM 111 CA ASP A 18 22.042 54.162 8.915 1.00 14.53 C </line>
<line>ATOM 119 CA PHE A 19 18.360 54.998 9.616 1.00 25.65 C </line>
<line>ATOM 130 CA GLN A 20 17.175 52.234 7.267 1.00 16.76 C </line>
<line>ATOM 139 CA LYS A 21 18.980 49.790 9.468 1.00 21.08 C </line>
<line>ATOM 146 CA VAL A 22 17.305 51.077 12.617 1.00 8.32 C </line>
<line>ATOM 153 CA TYR A 23 13.896 50.749 10.759 1.00 13.31 C </line>
<line>ATOM 165 CA ASN A 24 14.677 47.231 9.542 1.00 23.86 C </line>
<line>ATOM 173 CA ALA A 25 15.519 46.218 13.101 1.00 18.63 C </line>
<line>ATOM 178 CA ILE A 26 12.332 47.539 14.541 1.00 16.05 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASN TYR VAL LYS GLN PHE ASP GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.39 12.39 10.32 9.77 8.84 6.30 4.91 5.42 3.74 </line>
<line>ASP CA 13.03 11.10 10.13 9.02 6.76 5.37 5.49 3.84 </line>
<line>PHE CA 10.78 9.86 8.60 6.27 5.05 5.25 3.82 </line>
<line>GLN CA 9.92 8.54 6.04 5.02 5.48 3.75 </line>
<line>LYS CA 8.66 6.16 5.01 5.33 3.79 </line>
<line>VAL CA 6.40 5.20 5.58 3.90 </line>
<line>TYR CA 5.20 5.35 3.80 </line>
<line>ASN CA 5.53 3.79 </line>
<line>ALA CA 3.74 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLU CA 274</line>
<line>ASP CA 316</line>
<line>PHE CA 427</line>
<line>GLN CA 400</line>
<line>LYS CA 375</line>
<line>VAL CA 441</line>
<line>TYR CA 513</line>
<line>ASN CA 396</line>
<line>ALA CA 396</line>
<line>ILE CA 467</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1APXC</entryIDChain>
<sequence>DYQKAIEKAKRKL</sequence>
<secondary-structure>HHHHHHHHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3899 CA ASP C 11 20.924 7.085 80.219 1.00 14.26 C </line>
<line>ATOM 3907 CA TYR C 12 23.323 7.351 77.259 1.00 11.60 C </line>
<line>ATOM 3919 CA GLN C 13 20.953 5.162 75.264 1.00 12.97 C </line>
<line>ATOM 3928 CA LYS C 14 17.962 7.399 76.011 1.00 11.56 C </line>
<line>ATOM 3937 CA ALA C 15 19.971 10.466 74.990 1.00 10.08 C </line>
<line>ATOM 3942 CA ILE C 16 20.884 8.855 71.665 1.00 8.95 C </line>
<line>ATOM 3950 CA GLU C 17 17.255 7.899 70.891 1.00 13.24 C </line>
<line>ATOM 3959 CA LYS C 18 16.024 11.378 71.833 1.00 16.49 C </line>
<line>ATOM 3968 CA ALA C 19 18.857 13.055 69.918 1.00 8.69 C </line>
<line>ATOM 3973 CA LYS C 20 17.936 11.065 66.813 1.00 4.40 C </line>
<line>ATOM 3982 CA ARG C 21 14.389 12.417 66.819 1.00 10.17 C </line>
<line>ATOM 3993 CA LYS C 22 15.661 15.955 67.340 1.00 11.86 C </line>
<line>ATOM 4002 CA LEU C 23 18.055 15.563 64.415 1.00 8.18 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS ARG LYS ALA LYS GLU ILE ALA LYS GLN TYR ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 18.16 16.50 15.83 14.30 12.08 10.62 10.06 8.74 6.30 5.16 5.32 3.82 </line>
<line>TYR CA 16.13 15.20 14.64 12.33 10.31 9.95 8.81 6.29 5.11 5.50 3.79 </line>
<line>GLN CA 15.31 14.40 12.92 10.74 9.76 8.64 6.35 5.16 5.40 3.81 </line>
<line>LYS CA 14.18 12.40 11.07 9.90 8.36 6.09 5.19 5.44 3.81 </line>
<line>ALA CA 11.89 10.36 10.09 8.45 5.80 5.14 5.55 3.81 </line>
<line>ILE CA 10.27 9.82 8.85 6.09 4.98 5.48 3.83 </line>
<line>GLU CA 10.07 8.95 6.72 5.21 5.49 3.81 </line>
<line>LYS CA 8.76 6.42 5.38 5.38 3.81 </line>
<line>ALA CA 6.10 5.03 5.47 3.80 </line>
<line>LYS CA 5.10 5.42 3.80 </line>
<line>ARG CA 5.40 3.80 </line>
<line>LYS CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASP CA 170</line>
<line>TYR CA 262</line>
<line>GLN CA 255</line>
<line>LYS CA 224</line>
<line>ALA CA 284</line>
<line>ILE CA 364</line>
<line>GLU CA 303</line>
<line>LYS CA 275</line>
<line>ALA CA 370</line>
<line>LYS CA 379</line>
<line>ARG CA 271</line>
<line>LYS CA 308</line>
<line>LEU CA 397</line>
</n14>
</entryChain>
<parallel>
<x>-1.315000057220459</x>
<y>42.50699996948242</y>
<z>-64.23200225830078</z>
</parallel>
<rotation>
<x>0.527999997138977</x>
<y>0.5130000114440918</y>
<z>0.6769999861717224</z>
<x>0.3529999852180481</x>
<y>-0.8569999933242798</y>
<z>0.375</z>
<x>0.7730000019073486</x>
<y>0.04100000113248825</y>
<z>-0.6330000162124634</z>
</rotation>
<rmsd>2.57077693939209</rmsd>
<dmax>3.801332950592041</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>5CCP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>5CCPA</entryIDChain>
<sequence>RTFFQ-RLNMN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1186 CA ARG A 155 -11.338 70.756 18.011 1.00 23.62 C </line>
<line>ATOM 1197 CA THR A 156 -10.039 72.970 20.814 1.00 27.53 C </line>
<line>ATOM 1204 CA PHE A 157 -7.474 70.485 21.991 1.00 18.33 C </line>
<line>ATOM 1215 CA PHE A 158 -6.122 69.867 18.492 1.00 23.52 C </line>
<line>ATOM 1226 CA GLN A 159 -5.813 73.456 17.802 1.00 29.13 C </line>
<line>ATOM 1235 CA ARG A 160 -3.050 73.590 20.394 1.00 16.59 C </line>
<line>ATOM 1246 CA LEU A 161 -1.044 71.278 18.132 1.00 29.66 C </line>
<line>ATOM 1254 CA ASN A 162 -1.899 73.308 15.131 1.00 13.72 C </line>
<line>ATOM 1262 CA MET A 163 -4.127 70.745 13.514 1.00 7.10 C </line>
<line>ATOM 1270 CA ASN A 164 -7.282 71.689 11.640 1.00 17.89 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET ASN LEU ARG GLN PHE PHE THR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 7.61 8.50 10.19 10.31 9.08 6.15 5.31 5.55 3.80 </line>
<line>THR CA 9.66 9.65 9.93 9.54 7.03 5.21 5.51 3.76 </line>
<line>PHE CA 10.42 9.12 9.28 7.54 5.64 5.40 3.80 </line>
<line>PHE CA 7.18 5.43 6.40 5.28 5.19 3.67 </line>
<line>GLN CA 6.58 5.35 4.74 5.25 3.79 </line>
<line>ARG CA 9.91 7.52 5.39 3.81 </line>
<line>LEU CA 9.01 5.58 3.72 </line>
<line>ASN CA 6.62 3.76 </line>
<line>MET CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ARG CA 337</line>
<line>THR CA 285</line>
<line>PHE CA 347</line>
<line>PHE CA 395</line>
<line>GLN CA 306</line>
<line>ARG CA 318</line>
<line>LEU CA 386</line>
<line>ASN CA 327</line>
<line>MET CA 366</line>
<line>ASN CA 316</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1APX</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1APXC</entryIDChain>
<sequence>RDVFGKAMGLS</sequence>
<secondary-structure>HIIIIII </secondary-structure>
<atom-coordinate>
<line>ATOM 4909 CA ARG C 142 42.301 3.046 46.333 1.00 14.72 C </line>
<line>ATOM 4920 CA ASP C 143 45.162 4.752 48.186 1.00 14.89 C </line>
<line>ATOM 4928 CA VAL C 144 42.817 6.756 50.416 1.00 13.64 C </line>
<line>ATOM 4935 CA PHE C 145 39.907 4.284 50.764 1.00 14.61 C </line>
<line>ATOM 4946 CA GLY C 146 41.773 0.997 50.463 1.00 18.91 C </line>
<line>ATOM 4950 CA LYS C 147 45.246 1.658 51.867 1.00 25.33 C </line>
<line>ATOM 4959 CA ALA C 148 44.523 4.266 54.517 1.00 16.95 C </line>
<line>ATOM 4964 CA MET C 149 40.927 3.465 55.556 1.00 13.35 C </line>
<line>ATOM 4972 CA GLY C 150 41.078 -0.260 54.848 1.00 6.38 C </line>
<line>ATOM 4976 CA LEU C 151 37.840 -0.272 52.820 1.00 15.26 C </line>
<line>ATOM 4984 CA SER C 152 37.105 -2.411 49.745 1.00 19.52 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU GLY MET ALA LYS GLY PHE VAL ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 8.27 8.54 9.22 9.33 8.57 6.42 4.64 5.19 5.54 3.81 </line>
<line>ASP CA 10.89 10.02 9.28 8.60 6.38 4.81 5.55 5.87 3.81 </line>
<line>VAL CA 10.82 8.94 8.48 6.39 5.09 5.83 5.85 3.83 </line>
<line>PHE CA 7.33 5.41 6.22 4.97 5.95 6.05 3.79 </line>
<line>GLY CA 5.82 4.76 4.61 5.72 5.89 3.80 </line>
<line>LYS CA 9.35 7.71 5.47 5.96 3.79 </line>
<line>ALA CA 11.06 8.25 5.70 3.83 </line>
<line>MET CA 9.11 5.57 3.79 </line>
<line>GLY CA 6.82 3.82 </line>
<line>LEU CA 3.82 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ARG CA 315</line>
<line>ASP CA 272</line>
<line>VAL CA 363</line>
<line>PHE CA 406</line>
<line>GLY CA 315</line>
<line>LYS CA 258</line>
<line>ALA CA 315</line>
<line>MET CA 382</line>
<line>GLY CA 324</line>
<line>LEU CA 368</line>
<line>SER CA 306</line>
</n14>
</entryChain>
<parallel>
<x>-48.15800094604492</x>
<y>68.55000305175781</y>
<z>-32.540000915527344</z>
</parallel>
<rotation>
<x>-0.17800000309944153</x>
<y>0.828000009059906</y>
<z>0.531000018119812</z>
<x>-0.009999999776482582</x>
<y>-0.5419999957084656</y>
<z>0.8410000205039978</z>
<x>0.984000027179718</x>
<y>0.14499999582767487</y>
<z>0.10499999672174454</z>
</rotation>
<rmsd>0.8678619861602783</rmsd>
<dmax>1.7701539993286133</dmax>
</indel>