NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AQFD-3GR4B
confEVID 1AQFD-3GR4B
pdbIDA 1AQF
pdbIDB 3GR4
pdbChainA D
pdbChainB B
identity 0.90939998626709
indelSize 1
alignment <alignment>
<seq1>IQTQQLHAAMADTFLEHMCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVDVGSKVYVDDGLISLQVKQKGPDFLVTEVENGGFLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFEELARSSSHSTDLMEAMAMGSVEASYKCLAAALIVLTESGRSAHQVARYRPRAPIIAVTRNHQTARQAHLYRGIFPVVCKDPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP</seq1>
<seq2>IQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIK-----EVE----ATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQV-----DFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP</seq2>
<ss_1> GGG HHHHHH EEEE HHHHHHHHH EEEEE HHHHHHHHHHHHHHGGGG HHHH EEEEE EEEE GGG EE GGHHHH EEEEEE EEEEEEE EEEEEEE EEE HHHHHHHHHHHH EEE HHHHHHHHHHH EEEE HHHHH HHHHHHH EEEE HHHHHHH HHHHHHHHHHHHHH EE GGG HHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHH EEE HHHHHHHH EEEEE HHHHHGGGG EEEEEE HHHHHHHHHHHHHHHHHH EEEEEEE EEEEE </ss_1>
<ss_2> HHHH HHHHHH EEEE HHHHHHHHH EEEEE HHHHHHHHHHHHHHHGGG EEEEE ----- ---- EEEE GGG EEE HHHH EEEEEE EEEEE----- EEEE EEE HHHHHHHHHHHH EEEE HHHHHHHHHHH EEEEEE HHHHH HHHHHHH EEEE HHHHHHH HHHHHHHHHHHHHH EE GGG HHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHH EEE HHHHHHGGG EEEEE HHHHHGGGG EEE HHHHHHHHHHHHHHHHHH EEEEEEE EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>3GR4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3GR4B</entryIDChain>
<sequence>ISLQV-----DFLVT</sequence>
<secondary-structure>EEEEE----- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5041 CA ILE B 181 5.613 10.225 -23.746 1.00 45.26 C </line>
<line>ATOM 5049 CA SER B 182 6.181 6.462 -23.510 1.00 49.44 C </line>
<line>ATOM 5055 CA LEU B 183 7.242 3.879 -26.146 1.00 52.75 C </line>
<line>ATOM 5063 CA GLN B 184 7.938 0.134 -26.288 1.00 56.62 C </line>
<line>ATOM 5068 CA VAL B 185 10.635 -1.026 -28.738 1.00 59.77 C </line>
<line>ATOM 5073 CA ASP B 191 21.323 1.514 -36.109 1.00 56.81 C </line>
<line>ATOM 5078 CA PHE B 192 17.475 1.733 -35.920 1.00 57.58 C </line>
<line>ATOM 5083 CA LEU B 193 14.589 1.026 -33.481 1.00 58.80 C </line>
<line>ATOM 5091 CA VAL B 194 10.898 0.330 -34.304 1.00 61.70 C </line>
<line>ATOM 5096 CA THR B 195 8.480 1.308 -31.505 1.00 64.28 C </line>
</atom-coordinate>
<distance-map>
<line> THR VAL LEU PHE ASP VAL GLN LEU SER ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 12.16 15.40 16.12 19.00 21.81 13.29 10.66 6.98 3.81 </line>
<line>SER CA 9.79 13.28 14.13 17.43 20.31 10.16 7.13 3.84 </line>
<line>LEU CA 6.07 9.62 10.77 14.31 17.41 6.50 3.81 </line>
<line>GLN CA 5.37 8.55 9.84 13.65 16.66 3.82 </line>
<line>VAL CA 4.21 5.73 6.51 10.29 13.23 </line>
<line>ASP CA 13.64 10.65 7.25 3.86 </line>
<line>PHE CA 10.03 6.92 3.84 </line>
<line>LEU CA 6.43 3.85 </line>
<line>VAL CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ILE CA 292</line>
<line>SER CA 299</line>
<line>LEU CA 311</line>
<line>GLN CA 243</line>
<line>VAL CA 253</line>
<line>ASP CA 189</line>
<line>PHE CA 235</line>
<line>LEU CA 265</line>
<line>VAL CA 215</line>
<line>THR CA 251</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AQF</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1AQFD</entryIDChain>
<sequence>ISLQVKQKGPDFLVT</sequence>
<secondary-structure>EEEEEEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 13231 CA ILE D 180 -12.912 43.860 20.862 1.00 19.60 C </line>
<line>ATOM 13239 CA SER D 181 -14.125 42.697 24.168 1.00 37.58 C </line>
<line>ATOM 13245 CA LEU D 182 -17.238 44.518 25.402 1.00 38.85 C </line>
<line>ATOM 13253 CA GLN D 183 -18.808 44.094 28.787 1.00 28.19 C </line>
<line>ATOM 13262 CA VAL D 184 -22.556 44.188 29.082 1.00 72.10 C </line>
<line>ATOM 13269 CA LYS D 185 -22.936 46.595 31.994 1.00100.00 C </line>
<line>ATOM 13278 CA GLN D 186 -26.734 47.128 31.571 1.00 80.36 C </line>
<line>ATOM 13287 CA LYS D 187 -29.140 44.938 29.685 1.00100.00 C </line>
<line>ATOM 13296 CA GLY D 188 -32.051 46.355 27.789 1.00100.00 C </line>
<line>ATOM 13300 CA PRO D 189 -35.080 44.852 26.103 1.00 76.11 C </line>
<line>ATOM 13307 CA ASP D 190 -33.428 45.332 22.749 1.00 47.84 C </line>
<line>ATOM 13315 CA PHE D 191 -30.227 47.168 23.499 1.00 55.05 C </line>
<line>ATOM 13326 CA LEU D 192 -27.234 46.289 25.436 1.00 49.00 C </line>
<line>ATOM 13334 CA VAL D 193 -25.243 48.925 27.178 1.00 89.41 C </line>
<line>ATOM 13341 CA THR D 194 -21.701 47.741 27.073 1.00 34.15 C </line>
</atom-coordinate>
<distance-map>
<line> THR VAL LEU PHE ASP PRO GLY LYS GLN LYS VAL GLN LEU SER ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 11.44 14.75 15.23 17.82 20.66 22.80 20.51 18.50 17.79 15.23 12.68 9.88 6.31 3.71 </line>
<line>SER CA 9.55 13.09 13.65 16.72 19.53 21.15 18.65 16.15 15.28 12.41 9.87 6.72 3.81 </line>
<line>LEU CA 5.75 9.31 10.15 13.39 16.43 17.86 15.12 12.66 11.62 8.96 6.48 3.76 </line>
<line>GLN CA 4.96 8.21 9.33 12.95 15.87 16.51 13.47 10.41 8.93 5.79 3.76 </line>
<line>VAL CA 4.17 5.77 6.29 9.94 12.63 12.89 9.82 6.65 5.68 3.80 </line>
<line>LYS CA 5.20 5.83 7.85 11.21 14.04 13.61 10.04 6.82 3.86 </line>
<line>GLN CA 6.78 4.98 6.21 8.80 11.22 10.23 6.57 3.76 </line>
<line>LYS CA 8.37 6.11 4.85 6.66 8.16 6.94 3.75 </line>
<line>GLY CA 10.47 7.30 5.36 4.73 5.32 3.78 </line>
<line>PRO CA 13.72 10.70 8.00 5.97 3.77 </line>
<line>ASP CA 12.73 9.98 6.82 3.77 </line>
<line>PHE CA 9.26 6.44 3.67 </line>
<line>LEU CA 5.95 3.73 </line>
<line>VAL CA 3.74 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ILE CA 364</line>
<line>SER CA 361</line>
<line>LEU CA 397</line>
<line>GLN CA 329</line>
<line>VAL CA 340</line>
<line>LYS CA 240</line>
<line>GLN CA 235</line>
<line>LYS CA 253</line>
<line>GLY CA 235</line>
<line>PRO CA 209</line>
<line>ASP CA 283</line>
<line>PHE CA 345</line>
<line>LEU CA 369</line>
<line>VAL CA 320</line>
<line>THR CA 368</line>
</n14>
</entryChain>
<parallel>
<x>33.439998626708984</x>
<y>-41.775001525878906</y>
<z>-54.2400016784668</z>
</parallel>
<rotation>
<x>-0.7940000295639038</x>
<y>0.32100000977516174</y>
<z>0.515999972820282</z>
<x>-0.5199999809265137</x>
<y>0.08100000023841858</y>
<z>-0.8500000238418579</z>
<x>-0.3149999976158142</x>
<y>-0.9440000057220459</y>
<z>0.10300000011920929</z>
</rotation>
<rmsd>0.4819619953632355</rmsd>
<dmax>0.6818270087242126</dmax>
</indel>