NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AR5A-2NYBC
confEVID 1AR5A-2NYBC
pdbIDA 1AR5
pdbIDB 2NYB
pdbChainA A
pdbChainB C
identity 0.333299994468689
indelSize 2
alignment <alignment>
<seq1>AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALD--------KLAEARDKADFGAINKLEKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNWDDVALRFSEARVA</seq1>
<seq2>-SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSE---------GGVFNNAAEVWNHTFYWNCLAP--NAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSD-GKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA----</seq2>
<ss_1> HHHHHHIIIIHHHHHHHHHHHHHH--------HHHHHHH HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHH EEEEEEEEE EEEEEEEE EEE HHHH HHHHHHHGGGGEEHHHHHHHHHHH </ss_1>
<ss_2>- HHHHHHIIIIHHHHHHHHHHHHH HHHHH ---------HHHHHHHHHHHHHHHHHH -- HHHHHHHHHHH HHHHHHHHHHHHH EEEEEEEEE - EEEEEEEE EEE HHHH HHHHHHHH EEHHHHHHHH ----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2NYB</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2NYBC</entryIDChain>
<sequence>NCLAP--NAGGE</sequence>
<secondary-structure>H -- </secondary-structure>
<atom-coordinate>
<line>ATOM 4062 CA ASN C 78 -36.327 34.375 -31.055 1.00 11.13 C </line>
<line>ATOM 4070 CA CYS C 79 -37.894 32.873 -27.909 1.00 10.42 C </line>
<line>ATOM 4076 CA LEU C 80 -35.099 30.271 -27.840 1.00 10.78 C </line>
<line>ATOM 4084 CA ALA C 81 -31.332 30.588 -27.419 1.00 11.53 C </line>
<line>ATOM 4089 CA PRO C 82 -28.188 28.712 -26.423 1.00 12.85 C </line>
<line>ATOM 4096 CA ASN C 83 -26.706 29.565 -23.001 1.00 14.67 C </line>
<line>ATOM 4104 CA ALA C 84 -30.116 30.777 -21.810 1.00 13.51 C </line>
<line>ATOM 4109 CA GLY C 85 -33.122 29.284 -20.010 1.00 13.02 C </line>
<line>ATOM 4113 CA GLY C 86 -33.092 29.508 -16.229 1.00 14.40 C </line>
<line>ATOM 4117 CA GLU C 87 -35.209 32.015 -14.357 1.00 16.40 C </line>
</atom-coordinate>
<distance-map>
<line> GLU GLY GLY ALA ASN PRO ALA LEU CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.90 15.94 12.58 11.70 13.44 10.94 7.25 5.36 3.82 </line>
<line>CYS CA 13.84 13.07 9.90 10.10 12.66 10.66 6.97 3.82 </line>
<line>LEU CA 13.60 11.81 8.14 7.84 9.71 7.22 3.80 </line>
<line>ALA CA 13.70 11.38 7.73 5.74 6.48 3.79 </line>
<line>PRO CA 14.35 11.34 8.11 5.41 3.83 </line>
<line>ASN CA 12.37 9.31 7.08 3.81 </line>
<line>ALA CA 9.11 6.45 3.81 </line>
<line>GLY CA 6.62 3.79 </line>
<line>GLY CA 3.78 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ASN CA 426</line>
<line>CYS CA 489</line>
<line>LEU CA 476</line>
<line>ALA CA 355</line>
<line>PRO CA 272</line>
<line>ASN CA 205</line>
<line>ALA CA 273</line>
<line>GLY CA 333</line>
<line>GLY CA 260</line>
<line>GLU CA 276</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AR5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AR5A</entryIDChain>
<sequence>KNMAPKGSAPER</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 632 CA LYS A 80 40.102 17.348 55.570 1.00 13.27 C </line>
<line>ATOM 641 CA ASN A 81 39.849 20.852 54.076 1.00 11.41 C </line>
<line>ATOM 649 CA MET A 82 36.529 21.278 55.880 1.00 12.83 C </line>
<line>ATOM 657 CA ALA A 83 35.412 21.488 59.505 1.00 15.93 C </line>
<line>ATOM 662 CA PRO A 84 32.262 22.634 61.320 1.00 17.41 C </line>
<line>ATOM 669 CA LYS A 85 32.070 26.433 61.497 1.00 20.38 C </line>
<line>ATOM 678 CA GLY A 86 33.647 27.698 64.706 1.00 27.29 C </line>
<line>ATOM 682 CA SER A 87 35.953 24.672 65.027 1.00 30.65 C </line>
<line>ATOM 688 CA ALA A 88 38.646 26.405 62.975 1.00 33.80 C </line>
<line>ATOM 693 CA PRO A 89 39.794 29.946 62.050 1.00 38.11 C </line>
<line>ATOM 700 CA GLU A 90 37.658 31.853 59.535 1.00 46.77 C </line>
<line>ATOM 709 CA ARG A 91 40.783 33.325 57.901 1.00 43.46 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU PRO ALA SER GLY LYS PRO ALA MET ASN LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 16.16 15.23 14.17 11.79 12.66 15.24 13.50 11.07 7.39 5.32 3.82 </line>
<line>ASN CA 13.08 12.47 12.09 10.56 12.24 14.08 12.11 10.64 7.04 3.80 </line>
<line>MET CA 12.93 11.25 11.13 9.01 9.77 11.29 8.83 7.05 3.80 </line>
<line>ALA CA 13.10 10.61 9.86 6.83 6.40 8.29 6.29 3.81 </line>
<line>PRO CA 14.09 10.83 10.52 7.60 5.61 6.25 3.81 </line>
<line>LYS CA 11.68 8.03 8.50 6.74 5.54 3.79 </line>
<line>GLY CA 11.35 7.75 7.06 5.45 3.82 </line>
<line>SER CA 12.21 9.20 7.17 3.80 </line>
<line>ALA CA 8.84 6.52 3.84 </line>
<line>PRO CA 5.44 3.81 </line>
<line>GLU CA 3.82 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>LYS CA 416</line>
<line>ASN CA 474</line>
<line>MET CA 486</line>
<line>ALA CA 369</line>
<line>PRO CA 300</line>
<line>LYS CA 270</line>
<line>GLY CA 185</line>
<line>SER CA 205</line>
<line>ALA CA 254</line>
<line>PRO CA 237</line>
<line>GLU CA 274</line>
<line>ARG CA 319</line>
</n14>
</entryChain>
<parallel>
<x>-69.66600036621094</x>
<y>7.728000164031982</y>
<z>-85.23400115966797</z>
</parallel>
<rotation>
<x>-0.46799999475479126</x>
<y>0.7509999871253967</y>
<z>0.4659999907016754</z>
<x>-0.16599999368190765</x>
<y>-0.5920000076293945</y>
<z>0.7889999747276306</z>
<x>0.8679999709129333</x>
<y>0.2919999957084656</y>
<z>0.4009999930858612</z>
</rotation>
<rmsd>1.1844290494918823</rmsd>
<dmax>2.007385015487671</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NYB</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2NYBC</entryIDChain>
<sequence>VKNSD-GKLAI</sequence>
<secondary-structure>EEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4453 CA VAL C 126 -49.174 37.490 -23.214 1.00 10.12 C </line>
<line>ATOM 4460 CA LYS C 127 -49.498 40.917 -21.629 1.00 12.12 C </line>
<line>ATOM 4469 CA ASN C 128 -53.098 42.115 -21.548 1.00 15.62 C </line>
<line>ATOM 4477 CA SER C 129 -54.002 45.784 -22.101 1.00 18.16 C </line>
<line>ATOM 4483 CA ASP C 130 -54.217 46.354 -18.324 1.00 19.33 C </line>
<line>ATOM 4491 CA GLY C 131 -50.646 45.103 -17.800 1.00 16.74 C </line>
<line>ATOM 4496 CA ALYS C 132 -51.670 41.731 -16.359 0.50 14.12 C </line>
<line>ATOM 4513 CA LEU C 133 -49.958 38.659 -17.781 1.00 11.83 C </line>
<line>ATOM 4521 CA ALA C 134 -51.904 35.624 -18.926 1.00 10.95 C </line>
<line>ATOM 4526 CA ILE C 135 -51.397 32.279 -20.605 1.00 10.32 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA LEU LYS GLY ASP SER ASN LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.24 5.41 5.61 8.44 9.46 11.31 9.66 6.29 3.79 </line>
<line>LYS CA 8.90 6.41 4.49 5.76 5.79 7.92 6.65 3.79 </line>
<line>ASN CA 10.03 7.10 6.00 5.40 5.38 5.44 3.82 </line>
<line>SER CA 13.84 10.85 9.26 7.41 5.50 3.83 </line>
<line>ASP CA 14.53 10.99 8.81 5.63 3.82 </line>
<line>GLY CA 13.15 9.63 6.48 3.81 </line>
<line>LYS CA 10.37 6.63 3.79 </line>
<line>LEU CA 7.12 3.78 </line>
<line>ALA CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 436</line>
<line>LYS CA 334</line>
<line>ASN CA 246</line>
<line>SER CA 168</line>
<line>ASP CA 139</line>
<line>GLY CA 219</line>
<line>LYS CA 236</line>
<line>LEU CA 345</line>
<line>ALA CA 360</line>
<line>ILE CA 403</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AR5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AR5A</entryIDChain>
<sequence>VWDPLGKRINT</sequence>
<secondary-structure>EEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 996 CA VAL A 130 48.122 24.440 44.937 1.00 11.80 C </line>
<line>ATOM 1003 CA TRP A 131 51.801 24.759 45.770 1.00 12.48 C </line>
<line>ATOM 1017 CA ASP A 132 53.950 25.042 42.646 1.00 13.42 C </line>
<line>ATOM 1025 CA PRO A 133 57.357 23.479 43.529 1.00 15.42 C </line>
<line>ATOM 1032 CA LEU A 134 59.025 24.814 40.374 1.00 17.86 C </line>
<line>ATOM 1040 CA GLY A 135 57.968 28.432 40.810 1.00 16.45 C </line>
<line>ATOM 1044 CA LYS A 136 57.928 28.156 44.621 1.00 18.07 C </line>
<line>ATOM 1053 CA ARG A 137 54.548 29.866 44.841 1.00 13.48 C </line>
<line>ATOM 1064 CA ILE A 138 50.840 29.344 45.444 1.00 13.32 C </line>
<line>ATOM 1072 CA ASN A 139 48.600 29.310 42.359 1.00 13.07 C </line>
<line>ATOM 1080 CA THR A 140 44.938 28.604 41.653 1.00 11.43 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASN ILE ARG LYS GLY LEU PRO ASP TRP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.19 5.53 5.63 8.41 10.49 11.40 11.83 9.39 6.29 3.79 </line>
<line>TRP CA 8.88 6.53 4.70 5.87 7.10 8.72 9.02 6.13 3.80 </line>
<line>ASP CA 9.74 6.85 6.00 5.33 5.42 5.57 5.57 3.85 </line>
<line>PRO CA 13.57 10.59 8.97 7.10 4.84 5.68 3.81 </line>
<line>LEU CA 14.64 11.53 10.64 8.09 5.51 3.79 </line>
<line>GLY CA 13.06 9.54 8.55 5.48 3.82 </line>
<line>LYS CA 13.33 9.67 7.23 3.79 </line>
<line>ARG CA 10.20 6.47 3.79 </line>
<line>ILE CA 7.05 3.81 </line>
<line>ASN CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 459</line>
<line>TRP CA 363</line>
<line>ASP CA 278</line>
<line>PRO CA 221</line>
<line>LEU CA 164</line>
<line>GLY CA 190</line>
<line>LYS CA 236</line>
<line>ARG CA 298</line>
<line>ILE CA 399</line>
<line>ASN CA 395</line>
<line>THR CA 426</line>
</n14>
</entryChain>
<parallel>
<x>-105.72899627685547</x>
<y>16.031999588012695</y>
<z>-63.8650016784668</z>
</parallel>
<rotation>
<x>-0.13699999451637268</x>
<y>0.9440000057220459</y>
<z>0.30000001192092896</z>
<x>0.0729999989271164</x>
<y>-0.2919999957084656</y>
<z>0.9539999961853027</z>
<x>0.9879999756813049</x>
<y>0.15199999511241913</y>
<z>-0.028999999165534973</z>
</rotation>
<rmsd>1.177996039390564</rmsd>
<dmax>2.168286085128784</dmax>
</indel>