NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1ASMA-2AY1B
confEVID 1ASMA-2AY1B
pdbIDA 1ASM
pdbIDB 2AY1
pdbChainA A
pdbChainB B
identity 0.433600008487701
indelSize 3
alignment <alignment>
<seq1>MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI---IKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL-</seq1>
<seq2>MLGNLKPQAPDKILALMGEF------GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSE---TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL---SGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV</seq2>
<ss_1> HHHHHH HHHHHHHHHHHHH HHHHHHHHHH HHHH EEEEEEE HHHHHHHHHHHHHHH EEEE HHHHHH EEEEEEEEE EEEHHHHHHHGGG EEEE HHHHHHHHHHHHH EEEEEE GGGHHHHHHH EEEEEEE EEEEEEE HHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGG---GG HHHHHHHHH EE EEEEEGG HHHHHHHHHHHH -</ss_1>
<ss_2> HHHHHHHH ------ HHHHHHHHHHHHH HHHHHHHHHHHHGGG GG---EEEEEEE HHHHHHHHHHHHHHHH EEE HHHHHHH EEE EE EEHHHHHHHGGG EEEE HHHHHHHHHHHHH EEEEEE HHHHHHHHHH EEEEEEE GGG EEEEEEE HHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH --- GGG HHHH HHHHHHHH EEEE EEEEEGG HHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1ASM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ASMA</entryIDChain>
<sequence>DFSFI---IKQNG</sequence>
<secondary-structure> GGG---GG </secondary-structure>
<atom-coordinate>
<line>ATOM 2613 CA ASP A 349 -22.038 79.095 24.570 1.00 76.71 C </line>
<line>ATOM 2621 CA PHE A 350 -19.872 76.154 23.346 1.00 47.02 C </line>
<line>ATOM 2632 CA SER A 351 -17.121 78.243 21.774 1.00 41.32 C </line>
<line>ATOM 2638 CA PHE A 352 -14.551 77.031 24.284 1.00 32.42 C </line>
<line>ATOM 2649 CA ILE A 353 -14.588 73.793 22.242 1.00 37.57 C </line>
<line>ATOM 2657 CA ILE A 354 -12.580 75.515 19.556 1.00 42.60 C </line>
<line>ATOM 2665 CA LYS A 355 -9.748 76.033 22.102 1.00 52.18 C </line>
<line>ATOM 2674 CA GLN A 356 -9.434 72.339 22.820 1.00 34.86 C </line>
<line>ATOM 2683 CA ASN A 357 -7.001 70.128 20.780 1.00 26.83 C </line>
<line>ATOM 2691 CA GLY A 358 -7.365 66.543 19.568 1.00 23.04 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN GLN LYS ILE ILE PHE SER PHE ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 19.95 17.91 14.41 12.90 11.29 9.44 7.77 5.72 3.85 </line>
<line>PHE CA 16.22 14.44 11.13 10.20 8.24 5.89 5.47 3.80 </line>
<line>SER CA 15.39 13.01 9.75 7.70 5.74 5.14 3.79 </line>
<line>PHE CA 13.56 10.81 7.10 5.37 5.34 3.83 </line>
<line>ILE CA 10.58 8.55 5.39 5.34 3.77 </line>
<line>ILE CA 10.38 7.85 5.54 3.84 </line>
<line>LYS CA 10.11 6.65 3.78 </line>
<line>GLN CA 6.96 3.87 </line>
<line>ASN CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ASP CA 265</line>
<line>PHE CA 352</line>
<line>SER CA 297</line>
<line>PHE CA 319</line>
<line>ILE CA 421</line>
<line>ILE CA 348</line>
<line>LYS CA 339</line>
<line>GLN CA 446</line>
<line>ASN CA 476</line>
<line>GLY CA 526</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2AY1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2AY1B</entryIDChain>
<sequence>GSDRFGFVAEHRG</sequence>
<secondary-structure> GGG HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 5449 CA GLY B 346 117.268 73.366 23.622 1.00 60.42 C </line>
<line>ATOM 5453 CA SER B 347 116.320 70.064 25.217 1.00 59.60 C </line>
<line>ATOM 5459 CA ASP B 348 118.856 67.466 24.093 1.00 57.62 C </line>
<line>ATOM 5467 CA ARG B 349 116.536 64.939 25.796 1.00 53.83 C </line>
<line>ATOM 5478 CA PHE B 350 115.033 64.061 22.405 1.00 49.55 C </line>
<line>ATOM 5489 CA GLY B 351 118.313 62.916 20.870 1.00 44.99 C </line>
<line>ATOM 5493 CA PHE B 352 117.332 59.246 21.193 1.00 40.75 C </line>
<line>ATOM 5504 CA VAL B 353 115.142 59.821 18.123 1.00 38.65 C </line>
<line>ATOM 5511 CA ALA B 354 118.138 59.876 15.773 1.00 36.69 C </line>
<line>ATOM 5516 CA GLU B 355 119.706 57.016 17.737 1.00 35.62 C </line>
<line>ATOM 5525 CA HIS B 356 116.766 54.635 17.327 1.00 33.34 C </line>
<line>ATOM 5535 CA ARG B 357 116.944 52.421 14.255 1.00 33.64 C </line>
<line>ATOM 5546 CA GLY B 358 113.994 51.256 12.184 1.00 33.50 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ARG HIS GLU ALA VAL PHE GLY PHE ARG ASP SER GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 25.11 22.95 19.77 17.55 15.63 14.77 14.33 10.86 9.65 8.73 6.13 3.79 </line>
<line>SER CA 23.00 20.78 17.34 15.42 14.01 12.52 11.59 8.60 6.75 5.16 3.80 </line>
<line>ASP CA 20.69 18.08 14.66 12.26 11.28 10.39 8.85 5.60 5.39 3.83 </line>
<line>ARG CA 19.47 17.03 13.34 11.74 11.34 9.33 7.36 5.61 3.81 </line>
<line>PHE CA 16.42 14.34 10.85 9.66 8.43 6.03 5.47 3.80 </line>
<line>GLY CA 15.17 12.48 9.14 6.82 5.94 5.21 3.81 </line>
<line>PHE CA 12.50 9.74 6.04 4.75 5.52 3.81 </line>
<line>VAL CA 10.49 8.54 5.49 5.37 3.81 </line>
<line>ALA CA 10.22 7.70 5.64 3.81 </line>
<line>GLU CA 9.83 6.39 3.81 </line>
<line>HIS CA 6.75 3.79 </line>
<line>ARG CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLY CA 150</line>
<line>SER CA 203</line>
<line>ASP CA 218</line>
<line>ARG CA 260</line>
<line>PHE CA 359</line>
<line>GLY CA 314</line>
<line>PHE CA 364</line>
<line>VAL CA 442</line>
<line>ALA CA 355</line>
<line>GLU CA 347</line>
<line>HIS CA 449</line>
<line>ARG CA 456</line>
<line>GLY CA 513</line>
</n14>
</entryChain>
<parallel>
<x>-132.31900024414062</x>
<y>12.097000122070312</y>
<z>1.090000033378601</z>
</parallel>
<rotation>
<x>0.3490000069141388</x>
<y>0.925000011920929</y>
<z>-0.15199999511241913</z>
<x>-0.9190000295639038</x>
<y>0.3059999942779541</y>
<z>-0.25</z>
<x>-0.1850000023841858</x>
<y>0.22699999809265137</y>
<z>0.9559999704360962</z>
</rotation>
<rmsd>3.125087022781372</rmsd>
<dmax>4.035283088684082</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2AY1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2AY1B</entryIDChain>
<sequence>GLKSE---TTATL</sequence>
<secondary-structure>G GG---EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3592 CA GLY B 91 126.381 30.682 7.294 1.00 28.66 C </line>
<line>ATOM 3596 CA LEU B 95 123.595 28.633 5.696 1.00 29.04 C </line>
<line>ATOM 3604 CA LYS B 96 124.124 24.935 6.431 1.00 29.64 C </line>
<line>ATOM 3613 CA SER B 97 121.463 23.278 4.289 1.00 30.00 C </line>
<line>ATOM 3619 CA GLU B 98 122.188 19.833 5.749 1.00 31.10 C </line>
<line>ATOM 3628 CA THR B 99 120.962 21.086 9.142 1.00 28.93 C </line>
<line>ATOM 3635 CA THR B 100 118.404 23.680 8.032 1.00 25.50 C </line>
<line>ATOM 3642 CA ALA B 101 114.672 23.134 7.544 1.00 22.05 C </line>
<line>ATOM 3647 CA THR B 102 112.598 25.786 5.784 1.00 19.08 C </line>
<line>ATOM 3654 CA LEU B 103 108.837 26.333 5.659 1.00 14.59 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR ALA THR THR GLU SER LYS LEU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 18.15 14.70 13.93 10.64 11.17 11.73 9.38 6.23 3.81 </line>
<line>LEU CA 14.94 11.36 10.64 7.55 8.70 8.91 5.93 3.81 </line>
<line>LYS CA 15.37 11.58 9.69 6.07 5.67 5.50 3.80 </line>
<line>SER CA 13.06 9.33 7.53 4.85 5.35 3.81 </line>
<line>GLU CA 14.85 11.29 8.40 5.86 3.82 </line>
<line>THR CA 13.66 10.16 6.81 3.81 </line>
<line>THR CA 10.21 6.57 3.80 </line>
<line>ALA CA 6.92 3.80 </line>
<line>THR CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>GLY CA 271</line>
<line>LEU CA 303</line>
<line>LYS CA 279</line>
<line>SER CA 281</line>
<line>GLU CA 215</line>
<line>THR CA 273</line>
<line>THR CA 371</line>
<line>ALA CA 413</line>
<line>THR CA 475</line>
<line>LEU CA 494</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ASM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ASMA</entryIDChain>
<sequence>GSALINDKRARTA</sequence>
<secondary-structure> HHHH EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 659 CA GLY A 91 20.705 64.309 17.538 1.00 58.70 C </line>
<line>ATOM 663 CA SER A 92 19.267 64.554 21.052 1.00 46.12 C </line>
<line>ATOM 669 CA ALA A 93 21.240 64.277 24.270 1.00 39.24 C </line>
<line>ATOM 674 CA LEU A 94 19.291 61.271 25.538 1.00 38.21 C </line>
<line>ATOM 682 CA ILE A 95 19.985 59.411 22.326 1.00 37.41 C </line>
<line>ATOM 690 CA ASN A 96 23.775 60.229 21.982 1.00 44.96 C </line>
<line>ATOM 698 CA ASP A 97 24.374 59.551 25.725 1.00 39.73 C </line>
<line>ATOM 706 CA LYS A 98 22.473 56.346 25.250 1.00 33.16 C </line>
<line>ATOM 715 CA ARG A 99 20.370 57.226 28.338 1.00 33.24 C </line>
<line>ATOM 726 CA ALA A 100 17.163 55.693 26.847 1.00 23.62 C </line>
<line>ATOM 731 CA ARG A 101 15.875 52.250 25.962 1.00 20.54 C </line>
<line>ATOM 742 CA THR A 102 12.516 51.491 24.192 1.00 19.31 C </line>
<line>ATOM 749 CA ALA A 103 10.602 48.235 24.274 1.00 14.31 C </line>
</atom-coordinate>
<distance-map>
<line> ALA THR ARG ALA ARG LYS ASP ASN ILE LEU ALA SER GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 20.14 16.60 15.48 13.17 12.92 11.23 10.16 6.77 6.89 8.67 6.75 3.80 </line>
<line>SER CA 18.76 15.04 13.67 10.79 10.39 9.76 8.54 6.32 5.35 5.56 3.78 </line>
<line>ALA CA 19.25 15.48 13.28 9.85 8.19 8.09 5.85 5.30 5.39 3.80 </line>
<line>LEU CA 15.72 11.97 9.66 6.11 5.04 5.87 5.37 5.82 3.78 </line>
<line>ILE CA 14.72 11.05 9.02 6.50 6.41 4.91 5.55 3.89 </line>
<line>ASN CA 17.96 14.42 11.91 9.38 7.81 5.24 3.85 </line>
<line>ASP CA 17.88 14.42 11.21 8.25 5.32 3.76 </line>
<line>LYS CA 14.41 11.13 7.80 5.58 3.84 </line>
<line>ARG CA 13.88 10.57 7.11 3.85 </line>
<line>ALA CA 10.26 6.80 3.78 </line>
<line>ARG CA 6.84 3.87 </line>
<line>THR CA 3.78 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 174</line>
<line>SER CA 242</line>
<line>ALA CA 247</line>
<line>LEU CA 337</line>
<line>ILE CA 305</line>
<line>ASN CA 204</line>
<line>ASP CA 220</line>
<line>LYS CA 284</line>
<line>ARG CA 327</line>
<line>ALA CA 435</line>
<line>ARG CA 451</line>
<line>THR CA 510</line>
<line>ALA CA 496</line>
</n14>
</entryChain>
<parallel>
<x>102.23699951171875</x>
<y>-35.465999603271484</y>
<z>-17.211999893188477</z>
</parallel>
<rotation>
<x>0.6919999718666077</x>
<y>-0.36399999260902405</y>
<z>0.6230000257492065</z>
<x>0.7129999995231628</x>
<y>0.21199999749660492</y>
<z>-0.6679999828338623</z>
<x>-0.11100000143051147</x>
<y>-0.9070000052452087</y>
<z>-0.4059999883174896</z>
</rotation>
<rmsd>2.920619010925293</rmsd>
<dmax>6.229879856109619</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2AY1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2AY1B</entryIDChain>
<sequence>ELRDL---SGSDR</sequence>
<secondary-structure>HHH --- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 5399 CA GLU B 340 113.520 70.425 15.089 1.00 51.09 C </line>
<line>ATOM 5408 CA LEU B 341 112.835 69.265 18.658 1.00 54.21 C </line>
<line>ATOM 5416 CA ARG B 342 116.304 70.335 19.785 1.00 57.43 C </line>
<line>ATOM 5427 CA ASP B 343 115.994 73.801 18.234 1.00 59.49 C </line>
<line>ATOM 5435 CA LEU B 344 112.522 74.086 19.792 1.00 60.09 C </line>
<line>ATOM 5443 CA SER B 345 113.503 73.809 23.467 1.00 60.63 C </line>
<line>ATOM 5449 CA GLY B 346 117.268 73.366 23.622 1.00 60.42 C </line>
<line>ATOM 5453 CA SER B 347 116.320 70.064 25.217 1.00 59.60 C </line>
<line>ATOM 5459 CA ASP B 348 118.856 67.466 24.093 1.00 57.62 C </line>
<line>ATOM 5467 CA ARG B 349 116.536 64.939 25.796 1.00 53.83 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ASP SER GLY SER LEU ASP ARG LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 12.40 10.88 10.51 9.77 9.04 6.04 5.24 5.46 3.81 </line>
<line>LEU CA 9.13 8.31 7.47 7.82 6.65 4.96 5.54 3.80 </line>
<line>ARG CA 8.08 5.77 5.44 4.98 5.79 5.33 3.81 </line>
<line>ASP CA 11.66 9.09 7.93 5.55 5.80 3.82 </line>
<line>LEU CA 11.65 10.12 7.75 6.14 3.81 </line>
<line>SER CA 9.66 8.32 5.00 3.79 </line>
<line>GLY CA 8.73 6.13 3.79 </line>
<line>SER CA 5.16 3.80 </line>
<line>ASP CA 3.83 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 301</line>
<line>LEU CA 323</line>
<line>ARG CA 248</line>
<line>ASP CA 194</line>
<line>LEU CA 221</line>
<line>SER CA 195</line>
<line>GLY CA 150</line>
<line>SER CA 203</line>
<line>ASP CA 218</line>
<line>ARG CA 260</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ASM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ASMA</entryIDChain>
<sequence>TLQEKGANRDFSF</sequence>
<secondary-structure>HHHH GG</secondary-structure>
<atom-coordinate>
<line>ATOM 2543 CA THR A 340 -24.105 74.716 13.826 1.00 36.93 C </line>
<line>ATOM 2550 CA LEU A 341 -24.688 74.763 17.559 1.00 46.91 C </line>
<line>ATOM 2558 CA GLN A 342 -25.186 78.504 17.530 1.00 69.24 C </line>
<line>ATOM 2567 CA GLU A 343 -27.069 78.248 14.174 1.00 77.26 C </line>
<line>ATOM 2576 CA LYS A 344 -29.407 75.606 15.662 1.00 57.69 C </line>
<line>ATOM 2585 CA GLY A 345 -30.519 77.281 18.912 1.00 63.19 C </line>
<line>ATOM 2589 CA ALA A 346 -27.856 76.352 21.553 1.00 71.64 C </line>
<line>ATOM 2594 CA ASN A 347 -28.888 77.902 24.830 1.00 89.50 C </line>
<line>ATOM 2602 CA ARG A 348 -25.292 78.029 26.170 1.00 87.05 C </line>
<line>ATOM 2613 CA ASP A 349 -22.038 79.095 24.570 1.00 76.71 C </line>
<line>ATOM 2621 CA PHE A 350 -19.872 76.154 23.346 1.00 47.02 C </line>
<line>ATOM 2632 CA SER A 351 -17.121 78.243 21.774 1.00 41.32 C </line>
<line>ATOM 2638 CA PHE A 352 -14.551 77.031 24.284 1.00 32.42 C </line>
</atom-coordinate>
<distance-map>
<line> PHE SER PHE ASP ARG ASN ALA GLY LYS GLU GLN LEU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 14.35 11.15 10.52 11.78 12.84 12.41 8.74 8.58 5.68 4.62 5.41 3.78 </line>
<line>LEU CA 12.37 9.33 7.66 8.66 9.23 8.96 5.34 6.49 5.16 5.41 3.77 </line>
<line>GLN CA 12.68 9.12 8.22 7.73 8.65 8.21 5.29 5.64 5.45 3.86 </line>
<line>GLU CA 16.14 12.52 11.85 11.58 12.13 10.82 7.66 5.94 3.83 </line>
<line>LYS CA 17.24 13.97 12.26 12.08 11.54 9.47 6.14 3.82 </line>
<line>GLY CA 16.85 13.73 11.59 10.36 8.98 6.17 3.86 </line>
<line>ALA CA 13.60 10.90 8.19 7.10 5.54 3.77 </line>
<line>ASN CA 14.37 12.16 9.30 6.96 3.84 </line>
<line>ARG CA 10.95 9.28 6.39 3.78 </line>
<line>ASP CA 7.77 5.72 3.85 </line>
<line>PHE CA 5.47 3.80 </line>
<line>SER CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>THR CA 291</line>
<line>LEU CA 335</line>
<line>GLN CA 240</line>
<line>GLU CA 205</line>
<line>LYS CA 220</line>
<line>GLY CA 210</line>
<line>ALA CA 259</line>
<line>ASN CA 205</line>
<line>ARG CA 233</line>
<line>ASP CA 265</line>
<line>PHE CA 352</line>
<line>SER CA 297</line>
<line>PHE CA 319</line>
</n14>
</entryChain>
<parallel>
<x>139.49000549316406</x>
<y>-4.994999885559082</y>
<z>1.378000020980835</z>
</parallel>
<rotation>
<x>0.5659999847412109</x>
<y>-0.7889999747276306</y>
<z>0.2370000034570694</z>
<x>0.8169999718666077</x>
<y>0.5759999752044678</y>
<z>-0.032999999821186066</z>
<x>-0.11100000143051147</x>
<y>0.21199999749660492</y>
<z>0.9710000157356262</z>
</rotation>
<rmsd>2.82456111907959</rmsd>
<dmax>3.922826051712036</dmax>
</indel>