NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AT1A-3GD5A
confEVID 1AT1A-3GD5A
pdbIDA 1AT1
pdbIDB 3GD5
pdbChainA A
pdbChainB A
identity 0.26690000295639
indelSize 2
alignment <alignment>
<seq1>ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFQTSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQQTEGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPEYILDMLDEK----GI--AWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRV--DEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL</seq1>
<seq2>--TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL------------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAG-IPVINALTD-HEHPCQVVADLLTIRENFGRLAGLKLAYVGDGN--NVAHSLLLGCAKVG-MSIAVATPEGFTPDPAVSARASEIAGRTGAEVQIL--RDPFEAARGAHILYTDVWTHR---LQLFEQ----YQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG-----</seq2>
<ss_1> GGG HHHHHHHHHHHHHHHH EEEEE HHHHHHHHHHH EEEEE HHHHHHHHHHHH EEEEEE HHHHHH EE HHHHHHHHHHHHH EEEEE HHHHHHHHHGGG EEEEE HHHHHHHH ---- --EEE HHHH EEE GGG GGG GGGGGG EEE -- HHHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2>-- GGG HHHHHHHHHHHHHHH EEEEE HHHHHHHHHHHHH EEE ------------ HHHHHHHHHHH EEEEE HHHHHHHHHHH - - HHHHHHHHHHHHH EEEEE --HHHHHHHHHHH - EEEEE HHHHHHHHHHH EEE-- HHHH EEEE ---HHHH ---- HHHGGG EEE HHHHH HHHHHHHHHHHHHHHHHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3GD5A</entryIDChain>
<sequence>AHYAG-IPVIN</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 804 CA ALA A 121 31.536 18.140 15.422 1.00 49.66 C </line>
<line>ATOM 809 CA HIS A 122 32.601 14.521 15.708 1.00 52.00 C </line>
<line>ATOM 819 CA TYR A 123 30.428 13.683 18.740 1.00 47.11 C </line>
<line>ATOM 831 CA ALA A 124 27.547 16.190 18.565 1.00 43.74 C </line>
<line>ATOM 836 CA GLY A 125 25.767 14.471 15.698 1.00 42.42 C </line>
<line>ATOM 840 CA ILE A 126 24.453 17.891 14.697 1.00 38.93 C </line>
<line>ATOM 848 CA PRO A 127 25.758 20.678 12.427 1.00 37.81 C </line>
<line>ATOM 855 CA VAL A 128 28.735 22.479 13.963 1.00 37.40 C </line>
<line>ATOM 862 CA ILE A 129 29.799 25.969 12.905 1.00 34.39 C </line>
<line>ATOM 870 CA ASN A 130 33.148 27.565 13.658 1.00 35.78 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE VAL PRO ILE GLY ALA TYR HIS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.72 8.41 5.37 6.99 7.12 6.84 5.44 5.67 3.78 </line>
<line>HIS CA 13.22 12.11 9.02 9.77 8.88 6.83 6.04 3.82 </line>
<line>TYR CA 15.03 13.62 10.15 10.52 8.35 5.62 3.82 </line>
<line>ALA CA 13.60 11.52 7.88 7.81 5.24 3.79 </line>
<line>GLY CA 15.17 12.50 8.71 7.02 3.80 </line>
<line>ILE CA 13.05 9.85 6.32 3.82 </line>
<line>PRO CA 10.18 6.67 3.80 </line>
<line>VAL CA 6.74 3.80 </line>
<line>ILE CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ALA CA 365</line>
<line>HIS CA 280</line>
<line>TYR CA 269</line>
<line>ALA CA 331</line>
<line>GLY CA 271</line>
<line>ILE CA 343</line>
<line>PRO CA 390</line>
<line>VAL CA 485</line>
<line>ILE CA 544</line>
<line>ASN CA 531</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AT1</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AT1A</entryIDChain>
<sequence>TEFSGNVPVLN</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 876 CA THR A 116 42.681 51.226 10.454 1.00 19.96 C </line>
<line>ATOM 883 CA GLU A 117 42.583 54.851 11.837 1.00 23.30 C </line>
<line>ATOM 892 CA PHE A 118 46.354 54.888 11.264 1.00 22.63 C </line>
<line>ATOM 903 CA SER A 119 47.119 52.437 8.437 1.00 24.95 C </line>
<line>ATOM 909 CA GLY A 120 46.443 55.140 5.871 1.00 31.23 C </line>
<line>ATOM 913 CA ASN A 121 45.387 53.632 2.581 1.00 37.45 C </line>
<line>ATOM 921 CA VAL A 122 46.891 50.210 3.640 1.00 23.03 C </line>
<line>ATOM 928 CA PRO A 123 44.327 47.396 4.450 1.00 21.43 C </line>
<line>ATOM 935 CA VAL A 124 44.392 45.869 7.900 1.00 16.09 C </line>
<line>ATOM 942 CA LEU A 125 43.252 42.294 8.049 1.00 20.57 C </line>
<line>ATOM 950 CA ASN A 126 42.193 41.054 11.463 1.00 20.29 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LEU VAL PRO VAL ASN GLY SER PHE GLU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 10.23 9.27 6.18 7.31 8.07 8.67 7.10 5.02 5.25 3.88 </line>
<line>GLU CA 13.81 13.13 9.97 10.64 10.36 9.75 7.11 6.16 3.81 </line>
<line>PHE CA 14.45 13.36 9.82 10.33 8.96 8.83 5.40 3.82 </line>
<line>SER CA 12.77 10.86 7.13 7.01 5.29 6.22 3.79 </line>
<line>GLY CA 15.74 13.41 9.71 8.15 5.43 3.77 </line>
<line>ASN CA 15.73 12.77 9.46 6.60 3.89 </line>
<line>VAL CA 12.93 9.76 6.58 3.89 </line>
<line>PRO CA 9.69 6.34 3.77 </line>
<line>VAL CA 6.38 3.76 </line>
<line>LEU CA 3.78 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>THR CA 330</line>
<line>GLU CA 229</line>
<line>PHE CA 262</line>
<line>SER CA 323</line>
<line>GLY CA 238</line>
<line>ASN CA 243</line>
<line>VAL CA 344</line>
<line>PRO CA 418</line>
<line>VAL CA 496</line>
<line>LEU CA 557</line>
<line>ASN CA 535</line>
</n14>
</entryChain>
<parallel>
<x>-16.746000289916992</x>
<y>-34.244998931884766</y>
<z>7.671000003814697</z>
</parallel>
<rotation>
<x>-0.5659999847412109</x>
<y>0.07699999958276749</y>
<z>0.8209999799728394</z>
<x>0.02500000037252903</x>
<y>-0.9940000176429749</y>
<z>0.11100000143051147</z>
<x>0.8240000009536743</x>
<y>0.08299999684095383</y>
<z>0.5600000023841858</z>
</rotation>
<rmsd>0.7500669956207275</rmsd>
<dmax>0.9580709934234619</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3GD5</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3GD5A</entryIDChain>
<sequence>CAKVG-MSIAV</sequence>
<secondary-structure>HH - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1223 CA CYS A 177 39.725 35.169 -1.749 1.00 48.02 C </line>
<line>ATOM 1229 CA ALA A 178 41.315 32.424 -3.831 1.00 49.51 C </line>
<line>ATOM 1234 CA LYS A 179 37.983 30.587 -3.961 1.00 49.22 C </line>
<line>ATOM 1243 CA VAL A 180 36.166 33.520 -5.601 1.00 48.71 C </line>
<line>ATOM 1250 CA GLY A 181 39.039 34.431 -7.900 1.00 50.22 C </line>
<line>ATOM 1254 CA MET A 182 40.101 37.452 -5.877 1.00 49.06 C </line>
<line>ATOM 1262 CA SER A 183 43.843 38.062 -5.708 1.00 50.22 C </line>
<line>ATOM 1268 CA ILE A 184 45.262 38.462 -2.218 1.00 46.88 C </line>
<line>ATOM 1276 CA ALA A 185 48.515 39.850 -0.885 1.00 45.72 C </line>
<line>ATOM 1281 CA VAL A 186 49.201 39.331 2.818 1.00 44.24 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ALA ILE SER MET GLY VAL LYS ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 11.31 10.00 6.46 6.40 4.73 6.23 5.50 5.38 3.79 </line>
<line>ALA CA 12.41 10.75 7.39 6.46 5.56 5.08 5.55 3.81 </line>
<line>LYS CA 15.76 14.36 10.86 9.66 7.44 5.60 3.82 </line>
<line>VAL CA 16.57 14.66 10.89 8.92 5.57 3.79 </line>
<line>GLY CA 15.56 12.98 9.34 6.41 3.79 </line>
<line>MET CA 12.73 10.07 6.41 3.80 </line>
<line>SER CA 10.15 6.95 3.79 </line>
<line>ILE CA 6.45 3.78 </line>
<line>ALA CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>CYS CA 543</line>
<line>ALA CA 424</line>
<line>LYS CA 419</line>
<line>VAL CA 410</line>
<line>GLY CA 348</line>
<line>MET CA 420</line>
<line>SER CA 397</line>
<line>ILE CA 485</line>
<line>ALA CA 455</line>
<line>VAL CA 494</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AT1</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AT1A</entryIDChain>
<sequence>LAKFDGNRFYF</sequence>
<secondary-structure>GGG EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1333 CA LEU A 176 25.693 32.189 9.236 1.00 27.10 C </line>
<line>ATOM 1341 CA ALA A 177 22.824 34.495 10.224 1.00 25.33 C </line>
<line>ATOM 1346 CA LYS A 178 23.165 35.866 6.686 1.00 29.69 C </line>
<line>ATOM 1355 CA PHE A 179 22.054 32.714 4.879 1.00 34.00 C </line>
<line>ATOM 1366 CA ASP A 180 18.607 31.302 5.485 1.00 40.33 C </line>
<line>ATOM 1374 CA GLY A 181 16.987 28.918 7.817 1.00 36.25 C </line>
<line>ATOM 1378 CA ASN A 182 20.113 28.011 9.752 1.00 34.65 C </line>
<line>ATOM 1386 CA ARG A 183 19.563 26.480 13.181 1.00 33.77 C </line>
<line>ATOM 1397 CA PHE A 184 21.595 27.038 16.283 1.00 32.77 C </line>
<line>ATOM 1408 CA TYR A 185 22.058 25.065 19.431 1.00 32.44 C </line>
<line>ATOM 1420 CA PHE A 186 24.391 26.645 21.912 1.00 30.66 C </line>
</atom-coordinate>
<distance-map>
<line> PHE TYR PHE ARG ASN GLY ASP PHE LYS ALA LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.90 12.96 9.64 9.26 6.99 9.41 8.07 5.70 5.14 3.81 </line>
<line>ALA CA 14.17 13.20 9.69 9.14 7.04 8.42 7.10 5.69 3.81 </line>
<line>LYS CA 17.84 16.74 13.13 11.97 8.97 9.37 6.56 3.80 </line>
<line>PHE CA 18.23 16.44 12.75 10.68 7.04 6.98 3.77 </line>
<line>ASP CA 18.03 15.66 11.99 9.13 5.60 3.71 </line>
<line>GLY CA 16.08 13.25 9.82 6.43 3.79 </line>
<line>ASN CA 12.96 10.30 6.77 3.80 </line>
<line>ARG CA 9.98 6.88 3.75 </line>
<line>PHE CA 6.30 3.74 </line>
<line>TYR CA 3.75 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LEU CA 516</line>
<line>ALA CA 418</line>
<line>LYS CA 354</line>
<line>PHE CA 331</line>
<line>ASP CA 259</line>
<line>GLY CA 265</line>
<line>ASN CA 369</line>
<line>ARG CA 392</line>
<line>PHE CA 460</line>
<line>TYR CA 416</line>
<line>PHE CA 452</line>
</n14>
</entryChain>
<parallel>
<x>18.726999282836914</x>
<y>4.000999927520752</y>
<z>-14.071000099182129</z>
</parallel>
<rotation>
<x>-0.37599998712539673</x>
<y>0.06599999964237213</y>
<z>0.9240000247955322</z>
<x>0.03700000047683716</x>
<y>-0.9959999918937683</y>
<z>0.0860000029206276</z>
<x>0.9259999990463257</x>
<y>0.06599999964237213</y>
<z>0.3720000088214874</z>
</rotation>
<rmsd>1.3578929901123047</rmsd>
<dmax>1.708083987236023</dmax>
</indel>