NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AVMB-1COJA
confEVID 1AVMB-1COJA
pdbIDA 1AVM
pdbIDB 1COJ
pdbChainA B
pdbChainB A
identity 0.280200004577637
indelSize 2
alignment <alignment>
<seq1>-AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKA------DFGAINKLEKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNWDDVALRFSEARVA---------</seq1>
<seq2>VHKLEPKDHL--KPQNLEGISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYSEYRELKVEETFNYMGVVLHELYFGMLTPGGKG--EPSEALKKKIEEDIGGLDACTNELKAAAMAFRG--WAILGLDIFSGRLVVNGLDAHNVYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINWDVVNERFEKAMKAYEALKDFIK</seq2>
<ss_1>- HHHHHHIIIIHHHHHHHHHHHHHHHHHHHHH ------ HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHH EEEEEEEEE EEEEEEEE EEE HHHH HHHHHHHGGGGEEHHHHHHHHHHHH ---------</ss_1>
<ss_2> GGG-- HHHHHHHIIIHHHHHHHHHHHHHHHHH HHHH GGG HHHHHHHHHHHHHHHHHHHHHHGGG -- HHHHHHHHH HHHHHHHHHHHHHH --EEEEEEE EEEEEEEEE EEE HHHH HHHHHHHHGGGEEHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1COJ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1COJA</entryIDChain>
<sequence>PGGKG--EPSEA</sequence>
<secondary-structure> -- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 738 CA PRO A 90 28.976 34.167 20.922 1.00 18.27 C </line>
<line>ATOM 745 CA GLY A 91 29.027 30.410 21.452 1.00 18.00 C </line>
<line>ATOM 749 CA GLY A 92 25.672 30.457 23.213 1.00 21.20 C </line>
<line>ATOM 753 CA LYS A 93 24.850 30.743 26.908 1.00 24.09 C </line>
<line>ATOM 762 CA GLY A 94 22.978 28.782 29.560 1.00 22.31 C </line>
<line>ATOM 766 CA GLU A 95 20.576 25.928 28.845 1.00 26.02 C </line>
<line>ATOM 775 CA PRO A 96 16.815 25.570 28.454 1.00 23.05 C </line>
<line>ATOM 782 CA SER A 97 15.134 25.527 31.873 1.00 22.31 C </line>
<line>ATOM 788 CA GLU A 98 13.492 22.401 33.268 1.00 24.52 C </line>
<line>ATOM 797 CA ALA A 99 10.116 24.119 33.010 1.00 19.18 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLU SER PRO GLU GLY LYS GLY GLY PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 24.55 23.04 19.65 16.69 14.19 11.81 8.04 5.47 3.79 </line>
<line>GLY CA 23.04 21.10 18.04 14.89 12.09 10.25 6.88 3.79 </line>
<line>GLY CA 19.45 17.73 14.50 11.39 8.84 7.10 3.80 </line>
<line>LYS CA 17.27 15.46 12.09 9.68 6.72 3.79 </line>
<line>GLY CA 14.11 12.02 8.80 7.04 3.80 </line>
<line>GLU CA 11.40 9.07 6.24 3.80 </line>
<line>PRO CA 8.23 6.65 3.81 </line>
<line>SER CA 5.33 3.80 </line>
<line>GLU CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>PRO CA 261</line>
<line>GLY CA 234</line>
<line>GLY CA 271</line>
<line>LYS CA 234</line>
<line>GLY CA 213</line>
<line>GLU CA 252</line>
<line>PRO CA 309</line>
<line>SER CA 252</line>
<line>GLU CA 207</line>
<line>ALA CA 258</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AVM</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AVMB</entryIDChain>
<sequence>PKGSAPERPTDE</sequence>
<secondary-structure> HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2267 CA PRO B 84 4.496 10.876 27.455 1.00 17.41 C </line>
<line>ATOM 2274 CA LYS B 85 4.518 7.068 27.871 1.00 28.76 C </line>
<line>ATOM 2283 CA GLY B 86 1.685 5.958 25.584 1.00 32.77 C </line>
<line>ATOM 2287 CA SER B 87 2.074 8.692 22.964 1.00 36.33 C </line>
<line>ATOM 2293 CA ALA B 88 4.461 6.600 20.844 1.00 38.20 C </line>
<line>ATOM 2298 CA PRO B 89 5.440 2.922 20.216 1.00 39.51 C </line>
<line>ATOM 2305 CA GLU B 90 7.642 1.378 22.920 1.00 41.24 C </line>
<line>ATOM 2314 CA ARG B 91 9.745 -0.202 20.176 1.00 35.28 C </line>
<line>ATOM 2325 CA PRO B 92 11.131 1.044 16.807 1.00 27.89 C </line>
<line>ATOM 2332 CA THR B 93 9.295 -0.061 13.684 1.00 28.11 C </line>
<line>ATOM 2339 CA ASP B 94 9.561 0.139 9.879 1.00 24.33 C </line>
<line>ATOM 2347 CA GLU B 95 12.749 1.615 8.362 1.00 22.73 C </line>
</atom-coordinate>
<distance-map>
<line> GLU ASP THR PRO ARG GLU PRO ALA SER GLY LYS PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 22.77 21.21 18.23 15.94 14.26 10.99 10.80 7.87 5.55 5.97 3.83 </line>
<line>LYS CA 21.87 19.93 16.58 14.23 11.81 8.16 8.75 7.04 5.72 3.81 </line>
<line>GLY CA 20.93 18.51 15.35 13.80 11.50 7.97 7.22 5.53 3.81 </line>
<line>SER CA 19.42 17.33 14.66 13.36 12.07 9.19 7.22 3.82 </line>
<line>ALA CA 15.79 13.71 10.91 9.57 8.64 6.46 3.86 </line>
<line>PRO CA 13.99 11.47 8.15 6.89 5.32 3.81 </line>
<line>GLU CA 15.43 13.24 9.49 7.05 3.80 </line>
<line>ARG CA 12.32 10.30 6.51 3.85 </line>
<line>PRO CA 8.62 7.16 3.79 </line>
<line>THR CA 6.56 3.82 </line>
<line>ASP CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>PRO CA 298</line>
<line>LYS CA 271</line>
<line>GLY CA 187</line>
<line>SER CA 208</line>
<line>ALA CA 256</line>
<line>PRO CA 237</line>
<line>GLU CA 276</line>
<line>ARG CA 313</line>
<line>PRO CA 359</line>
<line>THR CA 244</line>
<line>ASP CA 201</line>
<line>GLU CA 257</line>
</n14>
</entryChain>
<parallel>
<x>17.077999114990234</x>
<y>23.951000213623047</y>
<z>4.480000019073486</z>
</parallel>
<rotation>
<x>-0.8420000076293945</x>
<y>-0.11299999803304672</y>
<z>-0.527999997138977</z>
<x>0.012000000104308128</x>
<y>0.9739999771118164</y>
<z>-0.22699999809265137</z>
<x>0.5400000214576721</x>
<y>-0.1979999989271164</y>
<z>-0.8180000185966492</z>
</rotation>
<rmsd>2.4909679889678955</rmsd>
<dmax>3.732196092605591</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1COJ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1COJA</entryIDChain>
<sequence>MAFRG--WAILG</sequence>
<secondary-structure>HH --EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 970 CA MET A 123 13.609 25.526 5.693 1.00 10.74 C </line>
<line>ATOM 978 CA ALA A 124 9.939 25.690 4.644 1.00 7.21 C </line>
<line>ATOM 983 CA PHE A 125 9.348 29.412 5.190 1.00 7.04 C </line>
<line>ATOM 994 CA ARG A 126 10.409 32.469 3.241 1.00 7.21 C </line>
<line>ATOM 1005 CA GLY A 127 10.537 34.938 6.119 1.00 7.68 C </line>
<line>ATOM 1009 CA TRP A 128 10.769 33.621 9.693 1.00 9.07 C </line>
<line>ATOM 1023 CA ALA A 129 10.359 30.500 11.833 1.00 9.13 C </line>
<line>ATOM 1028 CA ILE A 130 8.992 31.121 15.331 1.00 10.25 C </line>
<line>ATOM 1036 CA LEU A 131 8.562 28.950 18.429 1.00 10.40 C </line>
<line>ATOM 1044 CA GLY A 132 6.084 30.635 20.733 1.00 8.59 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU ILE ALA TRP GLY ARG PHE ALA MET </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 17.58 14.12 12.06 8.54 9.47 9.91 8.03 5.79 3.82 </line>
<line>ALA CA 17.27 14.23 12.03 8.66 9.44 9.38 6.94 3.81 </line>
<line>PHE CA 15.93 13.27 10.29 6.81 6.33 5.73 3.78 </line>
<line>ARG CA 18.11 15.70 12.25 8.81 6.56 3.79 </line>
<line>GLY CA 15.87 13.83 10.09 7.24 3.82 </line>
<line>TRP CA 12.36 10.15 6.42 3.81 </line>
<line>ALA CA 9.87 7.01 3.81 </line>
<line>ILE CA 6.15 3.81 </line>
<line>LEU CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>MET CA 323</line>
<line>ALA CA 260</line>
<line>PHE CA 315</line>
<line>ARG CA 318</line>
<line>GLY CA 402</line>
<line>TRP CA 487</line>
<line>ALA CA 477</line>
<line>ILE CA 499</line>
<line>LEU CA 507</line>
<line>GLY CA 452</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AVM</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AVMB</entryIDChain>
<sequence>TGIQGSGWASLV</sequence>
<secondary-structure>H EEEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2526 CA THR B 119 26.378 4.388 32.556 1.00 11.34 C </line>
<line>ATOM 2533 CA GLY B 120 30.133 4.069 32.073 1.00 12.84 C </line>
<line>ATOM 2537 CA ILE B 121 30.930 7.742 31.433 1.00 11.76 C </line>
<line>ATOM 2545 CA GLN B 122 33.829 9.077 33.503 1.00 11.01 C </line>
<line>ATOM 2554 CA GLY B 123 32.617 12.615 34.097 1.00 9.30 C </line>
<line>ATOM 2558 CA SER B 124 29.708 14.482 32.494 1.00 6.95 C </line>
<line>ATOM 2564 CA GLY B 125 28.453 13.265 29.132 1.00 6.86 C </line>
<line>ATOM 2568 CA TRP B 126 25.871 11.835 26.748 1.00 6.22 C </line>
<line>ATOM 2582 CA ALA B 127 25.005 8.456 25.254 1.00 8.24 C </line>
<line>ATOM 2587 CA SER B 128 24.172 9.045 21.596 1.00 8.60 C </line>
<line>ATOM 2593 CA LEU B 129 22.738 7.124 18.661 1.00 8.75 C </line>
<line>ATOM 2601 CA VAL B 130 23.959 8.862 15.502 1.00 9.36 C </line>
</atom-coordinate>
<distance-map>
<line> VAL LEU SER ALA TRP GLY SER GLY GLN ILE GLY THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 17.80 14.62 12.11 8.47 9.46 9.74 10.63 10.44 8.85 5.76 3.80 </line>
<line>GLY CA 18.32 15.62 13.04 9.59 10.34 9.80 10.43 9.13 6.39 3.81 </line>
<line>ILE CA 17.43 15.19 12.01 8.59 8.02 6.48 6.93 5.80 3.80 </line>
<line>GLN CA 20.53 18.63 15.33 12.10 10.80 8.10 6.87 3.79 </line>
<line>GLY CA 20.85 19.13 15.50 12.39 10.01 6.51 3.81 </line>
<line>SER CA 18.80 17.15 13.38 10.53 7.40 3.79 </line>
<line>GLY CA 15.01 13.42 9.64 7.07 3.79 </line>
<line>TRP CA 11.79 9.87 6.10 3.79 </line>
<line>ALA CA 9.82 7.10 3.80 </line>
<line>SER CA 6.10 3.79 </line>
<line>LEU CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 347</line>
<line>GLY CA 251</line>
<line>ILE CA 290</line>
<line>GLN CA 195</line>
<line>GLY CA 247</line>
<line>SER CA 341</line>
<line>GLY CA 407</line>
<line>TRP CA 501</line>
<line>ALA CA 498</line>
<line>SER CA 537</line>
<line>LEU CA 537</line>
<line>VAL CA 456</line>
</n14>
</entryChain>
<parallel>
<x>-18.121999740600586</x>
<y>22.006000518798828</y>
<z>-21.93899917602539</z>
</parallel>
<rotation>
<x>-0.7409999966621399</x>
<y>0.20999999344348907</y>
<z>-0.6380000114440918</z>
<x>0.17399999499320984</x>
<y>0.9769999980926514</y>
<z>0.11999999731779099</z>
<x>0.6480000019073486</x>
<y>-0.020999999716877937</y>
<z>-0.7609999775886536</z>
</rotation>
<rmsd>2.057537078857422</rmsd>
<dmax>3.8836638927459717</dmax>
</indel>