NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AW9A-2GDRD
confEVID 1AW9A-2GDRD
pdbIDA 1AW9
pdbIDB 2GDR
pdbChainA A
pdbChainB D
identity 0.240700006484985
indelSize 3
alignment <alignment>
<seq1>APLKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTT-GAHKQPDFLALNPFGQIPALVDG-DEVLFESRAINRYIASKYASEGTDLLPATASAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNKYLAGDEFTLADANHASYLLYLSK---TPKAGLVAARPHVKAWWEAIVARPAFQKTVAAIPLPPPP</seq1>
<seq2>--MKLYYSPGA-CSLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFN---------PASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADI---YLFVVLGWSAYVNID--LSPWPSLQAFQGRVGGREAVQSALRAEGLI---</seq2>
<ss_1> EEEE HHHHHHHHHHHH EEE - EEEE - EEE HHHHHHHHHHH HHHHHHHHHHIIIIIHHHHHHHHIIIIHHHH HHHHHHHHHHHHHHHHHHHHHHHH HHHH HHHHHHGGG--- HHHH HHHHHHHHH HHHHHHHH </ss_1>
<ss_2>-- EEEE -GGHHHHHHHHH EEEE EE EEE EEE HHHHHHHHHH HHHHHHHHHHHHHIIIIHHHH HHHH--------- HHHHHHHHHHHHHHHHHHHHH HHHH---HHHHHGGG -- HHHHHHHHHHH HHHHHHHHH ---</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AW9</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AW9A</entryIDChain>
<sequence>VDLTT-GAHKQ</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 294 CA VAL A 34 55.320 58.258 19.739 1.00 45.57 C </line>
<line>ATOM 302 CA ASP A 35 52.573 56.650 17.735 1.00 54.65 C </line>
<line>ATOM 311 CA LEU A 36 53.816 53.083 17.218 1.00 61.00 C </line>
<line>ATOM 320 CA THR A 37 51.080 51.892 14.885 1.00 70.86 C </line>
<line>ATOM 329 CA THR A 38 48.135 53.778 16.445 1.00 74.22 C </line>
<line>ATOM 338 CA GLY A 39 47.682 55.725 13.205 1.00 78.43 C </line>
<line>ATOM 343 CA ALA A 40 46.204 52.790 11.213 1.00 80.58 C </line>
<line>ATOM 349 CA HIS A 41 46.611 51.903 7.440 1.00 79.82 C </line>
<line>ATOM 362 CA LYS A 42 49.756 50.393 8.883 1.00 77.41 C </line>
<line>ATOM 375 CA GLN A 43 52.832 51.443 6.911 1.00 76.34 C </line>
</atom-coordinate>
<distance-map>
<line> GLN LYS HIS ALA GLY THR THR LEU ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 14.74 14.51 16.36 13.63 10.37 9.09 9.06 5.95 3.76 </line>
<line>ASP CA 12.01 11.20 12.81 9.90 6.73 5.44 5.74 3.81 </line>
<line>LEU CA 10.48 9.65 12.20 9.70 7.79 5.78 3.79 </line>
<line>THR CA 8.18 6.33 8.68 6.17 5.39 3.83 </line>
<line>THR CA 10.88 8.44 9.32 5.66 3.81 </line>
<line>GLY CA 9.19 7.17 7.00 3.84 </line>
<line>ALA CA 8.02 4.88 3.90 </line>
<line>HIS CA 6.26 3.78 </line>
<line>LYS CA 3.80 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 291</line>
<line>ASP CA 254</line>
<line>LEU CA 277</line>
<line>THR CA 209</line>
<line>THR CA 165</line>
<line>GLY CA 131</line>
<line>ALA CA 116</line>
<line>HIS CA 101</line>
<line>LYS CA 135</line>
<line>GLN CA 145</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GDR</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2GDRD</entryIDChain>
<sequence>VDLASKKTASG</sequence>
<secondary-structure>EE EE </secondary-structure>
<atom-coordinate>
<line>ATOM 4941 CA VAL D 30 -14.054 -34.105 32.231 1.00 23.53 C </line>
<line>ATOM 4948 CA ASP D 31 -10.356 -34.889 32.042 1.00 29.41 C </line>
<line>ATOM 4956 CA LEU D 32 -10.182 -37.250 35.010 1.00 31.44 C </line>
<line>ATOM 4964 CA ALA D 33 -6.402 -36.959 35.090 1.00 33.81 C </line>
<line>ATOM 4969 CA SER D 34 -5.922 -33.193 35.310 1.00 33.55 C </line>
<line>ATOM 4975 CA LYS D 35 -9.350 -32.825 36.930 1.00 32.53 C </line>
<line>ATOM 4984 CA LYS D 36 -10.435 -30.224 34.421 1.00 33.75 C </line>
<line>ATOM 4993 CA THR D 37 -13.604 -29.738 32.398 1.00 32.65 C </line>
<line>ATOM 5000 CA ALA D 38 -13.577 -29.232 28.635 1.00 31.06 C </line>
<line>ATOM 5005 CA SER D 39 -13.550 -25.452 29.051 1.00 29.95 C </line>
<line>ATOM 5011 CA GLY D 40 -10.408 -25.914 31.134 1.00 30.02 C </line>
</atom-coordinate>
<distance-map>
<line> GLY SER ALA THR LYS LYS SER ALA LEU ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 9.03 9.23 6.07 4.39 5.74 6.77 8.74 8.65 5.71 3.78 </line>
<line>ASP CA 9.02 10.40 7.35 6.10 5.24 5.40 5.76 5.40 3.80 </line>
<line>LEU CA 11.98 13.64 10.79 8.66 7.06 4.89 5.89 3.79 </line>
<line>ALA CA 12.40 14.83 12.36 10.55 7.88 5.40 3.80 </line>
<line>SER CA 9.52 12.54 10.90 8.91 5.47 3.81 </line>
<line>LYS CA 9.08 11.58 9.98 6.94 3.77 </line>
<line>LYS CA 5.42 7.83 6.66 3.79 </line>
<line>THR CA 5.14 5.44 3.80 </line>
<line>ALA CA 5.22 3.80 </line>
<line>SER CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 334</line>
<line>ASP CA 255</line>
<line>LEU CA 274</line>
<line>ALA CA 187</line>
<line>SER CA 178</line>
<line>LYS CA 229</line>
<line>LYS CA 237</line>
<line>THR CA 276</line>
<line>ALA CA 229</line>
<line>SER CA 173</line>
<line>GLY CA 170</line>
</n14>
</entryChain>
<parallel>
<x>60.74399948120117</x>
<y>87.45899963378906</y>
<z>-18.406999588012695</z>
</parallel>
<rotation>
<x>-0.20100000500679016</x>
<y>-0.8820000290870667</y>
<z>0.4259999990463257</z>
<x>-0.8859999775886536</x>
<y>-0.02199999988079071</y>
<z>-0.46399998664855957</z>
<x>-0.4180000126361847</x>
<y>0.4699999988079071</y>
<z>0.7770000100135803</z>
</rotation>
<rmsd>4.358850002288818</rmsd>
<dmax>7.636229038238525</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AW9</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AW9A</entryIDChain>
<sequence>ALVDG-DEVLF</sequence>
<secondary-structure>EEEE - EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 502 CA ALA A 57 64.572 54.230 21.558 1.00 21.62 C </line>
<line>ATOM 508 CA LEU A 58 67.154 56.907 22.100 1.00 24.14 C </line>
<line>ATOM 517 CA VAL A 59 68.694 59.145 19.478 1.00 28.38 C </line>
<line>ATOM 525 CA ASP A 60 72.196 60.305 20.402 1.00 33.77 C </line>
<line>ATOM 534 CA GLY A 61 73.052 62.764 17.689 1.00 37.59 C </line>
<line>ATOM 539 CA ASP A 62 73.658 60.368 14.821 1.00 45.15 C </line>
<line>ATOM 548 CA GLU A 63 73.293 57.245 16.972 1.00 39.12 C </line>
<line>ATOM 558 CA VAL A 64 70.061 55.359 17.457 1.00 31.63 C </line>
<line>ATOM 566 CA LEU A 65 69.849 52.708 20.136 1.00 25.56 C </line>
<line>ATOM 575 CA PHE A 66 67.009 50.583 21.409 1.00 18.92 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LEU VAL GLU ASP GLY ASP VAL LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 4.39 5.67 6.94 10.30 12.87 12.64 9.82 6.74 3.76 </line>
<line>LEU CA 6.36 5.36 5.69 8.01 10.36 9.41 6.31 3.78 </line>
<line>VAL CA 8.94 6.57 4.50 5.57 6.92 5.94 3.80 </line>
<line>ASP CA 11.07 7.96 6.14 4.73 5.77 3.76 </line>
<line>GLY CA 14.10 10.83 7.99 5.57 3.79 </line>
<line>ASP CA 13.54 10.07 6.71 3.81 </line>
<line>GLU CA 10.18 6.52 3.77 </line>
<line>VAL CA 6.91 3.77 </line>
<line>LEU CA 3.77 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ALA CA 494</line>
<line>LEU CA 501</line>
<line>VAL CA 393</line>
<line>ASP CA 353</line>
<line>GLY CA 235</line>
<line>ASP CA 180</line>
<line>GLU CA 268</line>
<line>VAL CA 345</line>
<line>LEU CA 395</line>
<line>PHE CA 416</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GDR</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2GDRD</entryIDChain>
<sequence>CLQLDDGRTLT</sequence>
<secondary-structure>EEE EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 5118 CA CYS D 54 -22.325 -34.741 38.057 1.00 22.49 C </line>
<line>ATOM 5124 CA LEU D 55 -25.625 -33.310 36.848 1.00 22.39 C </line>
<line>ATOM 5132 CA GLN D 56 -25.846 -29.509 36.760 1.00 23.78 C </line>
<line>ATOM 5141 CA LEU D 57 -29.394 -28.174 36.550 1.00 26.44 C </line>
<line>ATOM 5149 CA ASP D 58 -30.523 -25.258 34.437 1.00 37.59 C </line>
<line>ATOM 5157 CA ASP D 59 -30.500 -23.476 37.806 1.00 38.44 C </line>
<line>ATOM 5165 CA GLY D 60 -26.780 -23.808 38.345 1.00 30.57 C </line>
<line>ATOM 5169 CA ARG D 61 -27.387 -26.420 41.024 1.00 25.62 C </line>
<line>ATOM 5180 CA THR D 62 -25.318 -29.580 40.834 1.00 21.87 C </line>
<line>ATOM 5187 CA LEU D 63 -25.964 -33.123 41.948 1.00 19.19 C </line>
<line>ATOM 5195 CA THR D 64 -23.488 -35.982 42.283 1.00 18.08 C </line>
</atom-coordinate>
<distance-map>
<line> THR LEU THR ARG GLY ASP ASP LEU GLN LEU CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 4.56 5.57 6.58 10.18 11.81 13.92 13.05 9.77 6.44 3.79 </line>
<line>LEU CA 6.42 5.11 5.47 8.25 9.69 11.02 9.73 6.38 3.81 </line>
<line>GLN CA 8.83 6.32 4.11 5.49 5.99 7.69 6.73 3.80 </line>
<line>LEU CA 11.35 8.09 6.08 5.21 5.40 4.99 3.77 </line>
<line>ASP CA 15.04 11.79 9.31 7.39 5.60 3.81 </line>
<line>ASP CA 15.02 11.44 8.56 5.36 3.77 </line>
<line>GLY CA 13.21 10.02 6.45 3.79 </line>
<line>ARG CA 10.40 6.91 3.78 </line>
<line>THR CA 6.81 3.77 </line>
<line>LEU CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>CYS CA 449</line>
<line>LEU CA 422</line>
<line>GLN CA 340</line>
<line>LEU CA 265</line>
<line>ASP CA 189</line>
<line>ASP CA 131</line>
<line>GLY CA 171</line>
<line>ARG CA 194</line>
<line>THR CA 296</line>
<line>LEU CA 315</line>
<line>THR CA 339</line>
</n14>
</entryChain>
<parallel>
<x>96.98500061035156</x>
<y>87.13999938964844</y>
<z>-19.047000885009766</z>
</parallel>
<rotation>
<x>-0.7889999747276306</x>
<y>-0.28200000524520874</y>
<z>-0.5460000038146973</z>
<x>0.4180000126361847</x>
<y>0.4050000011920929</y>
<z>-0.8130000233650208</z>
<x>0.45100000500679016</x>
<y>-0.8700000047683716</y>
<z>-0.20100000500679016</z>
</rotation>
<rmsd>0.7833309769630432</rmsd>
<dmax>1.4828410148620605</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2GDR</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2GDRD</entryIDChain>
<sequence>SVADI---YLFVV</sequence>
<secondary-structure> HHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5897 CA SER D 152 -35.899 -48.678 35.577 1.00 19.60 C </line>
<line>ATOM 5903 CA VAL D 153 -32.874 -46.472 36.219 1.00 17.14 C </line>
<line>ATOM 5910 CA ALA D 154 -31.459 -49.484 38.100 1.00 19.34 C </line>
<line>ATOM 5915 CA ASP D 155 -31.333 -51.549 34.912 1.00 19.81 C </line>
<line>ATOM 5923 CA ILE D 156 -29.612 -48.728 33.049 1.00 22.03 C </line>
<line>ATOM 5931 CA TYR D 157 -27.039 -48.531 35.851 1.00 21.39 C </line>
<line>ATOM 5943 CA LEU D 158 -26.339 -52.287 35.864 1.00 20.63 C </line>
<line>ATOM 5951 CA PHE D 159 -26.041 -52.394 32.074 1.00 24.01 C </line>
<line>ATOM 5962 CA VAL D 160 -23.337 -49.726 32.271 1.00 24.48 C </line>
<line>ATOM 5969 CA VAL D 161 -21.438 -51.557 35.015 1.00 22.06 C </line>
</atom-coordinate>
<distance-map>
<line> VAL VAL PHE LEU TYR ILE ASP ALA VAL SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 14.76 13.03 11.10 10.22 8.87 6.78 5.43 5.17 3.80 </line>
<line>VAL CA 12.57 10.82 9.95 8.75 6.20 5.08 5.46 3.82 </line>
<line>ALA CA 10.69 10.00 8.61 6.25 5.05 5.43 3.80 </line>
<line>ASP CA 9.90 8.62 6.06 5.14 5.33 3.79 </line>
<line>ILE CA 8.87 6.40 5.21 5.59 3.81 </line>
<line>TYR CA 6.42 5.29 5.49 3.82 </line>
<line>LEU CA 5.03 5.34 3.80 </line>
<line>PHE CA 5.53 3.80 </line>
<line>VAL CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>SER CA 490</line>
<line>VAL CA 545</line>
<line>ALA CA 540</line>
<line>ASP CA 547</line>
<line>ILE CA 564</line>
<line>TYR CA 567</line>
<line>LEU CA 572</line>
<line>PHE CA 525</line>
<line>VAL CA 521</line>
<line>VAL CA 501</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AW9</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AW9A</entryIDChain>
<sequence>TLADANHASYLLY</sequence>
<secondary-structure> HHHH HHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1492 CA THR A 163 76.512 51.241 40.066 1.00 21.18 C </line>
<line>ATOM 1501 CA LEU A 164 74.564 50.623 36.861 1.00 16.83 C </line>
<line>ATOM 1510 CA ALA A 165 73.504 47.256 38.316 1.00 14.62 C </line>
<line>ATOM 1516 CA ASP A 166 71.409 49.023 41.013 1.00 16.38 C </line>
<line>ATOM 1525 CA ALA A 167 70.060 51.785 38.791 1.00 15.94 C </line>
<line>ATOM 1531 CA ASN A 168 68.600 49.264 36.305 1.00 16.56 C </line>
<line>ATOM 1542 CA HIS A 169 66.342 48.028 39.108 1.00 11.64 C </line>
<line>ATOM 1555 CA ALA A 170 64.942 51.343 40.213 1.00 13.12 C </line>
<line>ATOM 1561 CA SER A 171 61.899 51.843 37.939 1.00 14.53 C </line>
<line>ATOM 1569 CA TYR A 172 60.557 48.378 38.551 1.00 13.21 C </line>
<line>ATOM 1583 CA LEU A 173 61.145 48.543 42.324 1.00 11.68 C </line>
<line>ATOM 1592 CA LEU A 174 59.229 51.844 42.203 1.00 18.22 C </line>
<line>ATOM 1601 CA TYR A 175 56.243 50.341 40.378 1.00 20.12 C </line>
</atom-coordinate>
<distance-map>
<line> TYR LEU LEU TYR SER ALA HIS ASN ALA ASP ALA LEU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 20.29 17.43 15.76 16.28 14.78 11.57 10.71 8.98 6.60 5.64 5.29 3.80 </line>
<line>LEU CA 18.66 16.28 14.64 14.29 12.77 10.21 8.91 6.14 5.04 5.45 3.82 </line>
<line>ALA CA 17.66 15.49 13.06 13.00 12.48 9.68 7.25 5.67 5.71 3.85 </line>
<line>ASP CA 15.24 12.56 10.36 11.15 10.38 6.92 5.50 5.49 3.79 </line>
<line>ALA CA 13.98 11.36 10.12 10.10 8.21 5.33 5.30 3.83 </line>
<line>ASN CA 13.06 11.37 9.61 8.40 7.36 5.74 3.81 </line>
<line>HIS CA 10.44 8.64 6.13 5.82 5.97 3.76 </line>
<line>ALA CA 8.76 6.07 5.17 5.55 3.83 </line>
<line>SER CA 6.34 5.03 5.54 3.77 </line>
<line>TYR CA 5.08 5.21 3.82 </line>
<line>LEU CA 5.57 3.82 </line>
<line>LEU CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 564</line>
<line>LEU CA 633</line>
<line>ALA CA 635</line>
<line>ASP CA 693</line>
<line>ALA CA 688</line>
<line>ASN CA 690</line>
<line>HIS CA 687</line>
<line>ALA CA 658</line>
<line>SER CA 630</line>
<line>TYR CA 612</line>
<line>LEU CA 639</line>
<line>LEU CA 560</line>
<line>TYR CA 508</line>
</n14>
</entryChain>
<parallel>
<x>-98.78099822998047</x>
<y>-99.60199737548828</y>
<z>-4.0269999504089355</z>
</parallel>
<rotation>
<x>-0.9520000219345093</x>
<y>0.24300000071525574</y>
<z>0.18700000643730164</z>
<x>0.057999998331069946</x>
<y>0.7409999966621399</y>
<z>-0.6690000295639038</z>
<x>-0.3019999861717224</x>
<y>-0.6259999871253967</y>
<z>-0.718999981880188</z>
</rotation>
<rmsd>3.1268560886383057</rmsd>
<dmax>4.625027179718018</dmax>
</indel>