NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AYPA-1Y6PA
confEVID 1AYPA-1Y6PA
pdbIDA 1AYP
pdbIDB 1Y6P
pdbChainA A
pdbChainB A
identity 0.360900014638901
indelSize 2
alignment <alignment>
<seq1>NLVNFHRMIKLTT-GKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKR------LEKRGCGTKFLSYKFSNSGSRITCAK-QDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKH-CRGSTPRC</seq1>
<seq2>ALWQFRSLIKCAIPGSHPLLDFNNYGCYCGLGGSGTPVDELDRCCETHDCCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKA--PYNKEHKNLDTKKYCKGESDKC</seq2>
<ss_1> HHHHHHHHHHH- HHHHHHHHHHHHH------HHH EEEEE EEE - HHHHHHHHHHHHHHHHHHGGG GGG GGG- </ss_1>
<ss_2> HHHHHHHHHH HHHHHHHHHHHHHHHGGG HHHHH HHHH EEEEE EEEEE HHHHHHHHHHHHHHHHHHH -- GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AYP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AYPA</entryIDChain>
<sequence>ITCAK-QDSCR</sequence>
<secondary-structure>EE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 565 CA ILE A 75 2.546 64.613 49.418 1.00 22.53 C </line>
<line>ATOM 573 CA THR A 76 6.189 63.449 49.295 1.00 16.08 C </line>
<line>ATOM 580 CA CYS A 77 7.302 59.884 50.034 1.00 14.62 C </line>
<line>ATOM 586 CA ALA A 78 10.548 59.522 51.921 1.00 17.33 C </line>
<line>ATOM 591 CA LYS A 79 13.233 57.190 50.519 1.00 22.65 C </line>
<line>ATOM 600 CA GLN A 80 12.737 53.876 52.342 1.00 22.11 C </line>
<line>ATOM 609 CA ASP A 81 12.929 50.269 51.033 1.00 19.58 C </line>
<line>ATOM 617 CA SER A 82 11.002 49.448 47.769 1.00 18.58 C </line>
<line>ATOM 623 CA CYS A 83 8.044 47.766 49.373 1.00 9.72 C </line>
<line>ATOM 629 CA ARG A 84 7.537 50.948 51.384 1.00 9.85 C </line>
</atom-coordinate>
<distance-map>
<line> ARG CYS SER ASP GLN LYS ALA CYS THR ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.68 17.72 17.44 17.78 15.09 13.06 9.81 6.74 3.83 </line>
<line>THR CA 12.75 15.79 14.88 14.91 11.99 9.50 6.43 3.81 </line>
<line>CYS CA 9.04 12.16 11.30 11.19 8.42 6.53 3.77 </line>
<line>ALA CA 9.10 12.29 10.91 9.60 6.07 3.82 </line>
<line>LYS CA 8.49 10.82 8.51 6.95 3.81 </line>
<line>GLN CA 6.04 8.26 6.60 3.84 </line>
<line>ASP CA 5.45 5.73 3.88 </line>
<line>SER CA 5.23 3.76 </line>
<line>CYS CA 3.80 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>ILE CA 283</line>
<line>THR CA 254</line>
<line>CYS CA 290</line>
<line>ALA CA 218</line>
<line>LYS CA 170</line>
<line>GLN CA 186</line>
<line>ASP CA 178</line>
<line>SER CA 223</line>
<line>CYS CA 265</line>
<line>ARG CA 303</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1Y6P</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1Y6PA</entryIDChain>
<sequence>ITCNSKNNACE</sequence>
<secondary-structure>EEEE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 633 CA ILE A 82 26.985 34.770 -17.057 1.00 18.10 C </line>
<line>ATOM 641 CA THR A 83 28.745 31.553 -16.002 1.00 17.73 C </line>
<line>ATOM 648 CA CYS A 84 27.343 28.016 -16.347 1.00 18.00 C </line>
<line>ATOM 654 CA ASN A 85 28.712 25.889 -13.500 1.00 17.58 C </line>
<line>ATOM 662 CA SER A 86 31.189 23.370 -14.897 1.00 18.24 C </line>
<line>ATOM 668 CA LYS A 87 29.649 20.850 -12.488 1.00 15.24 C </line>
<line>ATOM 677 CA ASN A 88 26.350 20.691 -14.428 1.00 12.20 C </line>
<line>ATOM 685 CA ASN A 89 26.028 17.386 -16.259 1.00 9.63 C </line>
<line>ATOM 693 CA ALA A 90 26.597 17.438 -20.012 1.00 11.84 C </line>
<line>ATOM 698 CA CYS A 91 22.881 17.822 -20.767 1.00 11.77 C </line>
<line>ATOM 704 CA GLU A 92 22.346 20.549 -18.169 1.00 10.82 C </line>
</atom-coordinate>
<distance-map>
<line> GLU CYS ALA ASN ASN LYS SER ASN CYS THR ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.00 17.83 17.59 17.43 14.34 14.89 12.34 9.72 6.80 3.82 </line>
<line>THR CA 12.91 15.67 14.83 14.43 11.23 11.30 8.61 6.19 3.82 </line>
<line>CYS CA 9.17 11.97 11.22 10.71 7.64 8.46 6.20 3.81 </line>
<line>ASN CA 9.53 12.32 10.88 9.33 5.78 5.22 3.80 </line>
<line>SER CA 9.84 11.59 9.08 8.02 5.55 3.81 </line>
<line>LYS CA 9.26 11.11 8.81 6.27 3.83 </line>
<line>ASN CA 5.48 7.77 6.47 3.79 </line>
<line>ASN CA 5.22 5.52 3.80 </line>
<line>ALA CA 5.58 3.81 </line>
<line>CYS CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ILE CA 302</line>
<line>THR CA 276</line>
<line>CYS CA 302</line>
<line>ASN CA 224</line>
<line>SER CA 171</line>
<line>LYS CA 154</line>
<line>ASN CA 226</line>
<line>ASN CA 230</line>
<line>ALA CA 255</line>
<line>CYS CA 315</line>
<line>GLU CA 354</line>
</n14>
</entryChain>
<parallel>
<x>-18.183000564575195</x>
<y>32.391998291015625</y>
<z>66.35399627685547</z>
</parallel>
<rotation>
<x>0.7020000219345093</x>
<y>0.4860000014305115</y>
<z>-0.5199999809265137</z>
<x>-0.5860000252723694</x>
<y>0.8090000152587891</y>
<z>-0.03500000014901161</z>
<x>0.40400001406669617</x>
<y>0.32899999618530273</y>
<z>0.8529999852180481</z>
</rotation>
<rmsd>0.6896060109138489</rmsd>
<dmax>1.3439019918441772</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1Y6P</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1Y6PA</entryIDChain>
<sequence>CFSKA--PYNKE</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 802 CA CYS A 105 22.293 37.723 -28.247 1.00 16.01 C </line>
<line>ATOM 808 CA PHE A 106 19.383 39.667 -26.747 1.00 17.23 C </line>
<line>ATOM 819 CA SER A 107 21.731 42.167 -25.116 1.00 21.09 C </line>
<line>ATOM 825 CA LYS A 108 23.354 42.867 -28.487 1.00 23.79 C </line>
<line>ATOM 834 CA ALA A 109 20.190 43.065 -30.572 1.00 26.47 C </line>
<line>ATOM 839 CA PRO A 110 18.304 46.378 -31.007 1.00 27.86 C </line>
<line>ATOM 846 CA TYR A 111 14.934 46.446 -29.278 1.00 27.43 C </line>
<line>ATOM 858 CA ASN A 112 11.998 47.349 -31.498 1.00 30.36 C </line>
<line>ATOM 866 CA LYS A 113 8.929 47.967 -29.324 1.00 33.89 C </line>
<line>ATOM 875 CA GLU A 114 6.498 47.764 -32.252 1.00 35.27 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LYS ASN TYR PRO ALA LYS SER PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.14 16.87 14.46 11.46 9.92 6.19 5.26 5.47 3.81 </line>
<line>PHE CA 16.18 13.59 11.67 8.49 8.02 5.18 5.39 3.80 </line>
<line>SER CA 17.73 14.67 12.74 9.05 8.01 5.74 3.81 </line>
<line>LYS CA 17.95 15.32 12.57 9.18 6.65 3.79 </line>
<line>ALA CA 14.57 12.34 9.29 6.38 3.84 </line>
<line>PRO CA 11.95 9.66 6.40 3.79 </line>
<line>TYR CA 9.04 6.19 3.79 </line>
<line>ASN CA 5.57 3.81 </line>
<line>LYS CA 3.81 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>CYS CA 339</line>
<line>PHE CA 401</line>
<line>SER CA 320</line>
<line>LYS CA 243</line>
<line>ALA CA 271</line>
<line>PRO CA 235</line>
<line>TYR CA 287</line>
<line>ASN CA 243</line>
<line>LYS CA 223</line>
<line>GLU CA 205</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AYP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AYPA</entryIDChain>
<sequence>CFARNKTTYNKK</sequence>
<secondary-structure>HHHGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 723 CA CYS A 97 -6.580 60.916 41.703 1.00 10.66 C </line>
<line>ATOM 729 CA PHE A 98 -9.380 61.106 44.305 1.00 13.63 C </line>
<line>ATOM 740 CA ALA A 99 -8.831 64.921 44.341 1.00 16.98 C </line>
<line>ATOM 745 CA ARG A 100 -8.858 65.250 40.473 1.00 23.88 C </line>
<line>ATOM 756 CA ASN A 101 -12.152 63.544 40.252 1.00 20.71 C </line>
<line>ATOM 764 CA LYS A 102 -13.623 65.347 43.311 1.00 21.79 C </line>
<line>ATOM 773 CA THR A 103 -16.177 67.131 41.130 1.00 27.49 C </line>
<line>ATOM 780 CA THR A 104 -17.107 63.719 39.857 1.00 26.84 C </line>
<line>ATOM 787 CA TYR A 105 -17.855 62.206 43.355 1.00 23.50 C </line>
<line>ATOM 799 CA ASN A 106 -21.404 60.902 43.414 1.00 25.25 C </line>
<line>ATOM 807 CA LYS A 107 -22.901 60.295 46.915 1.00 27.76 C </line>
<line>ATOM 816 CA LYS A 108 -25.186 57.957 45.039 1.00 28.15 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LYS ASN TYR THR THR LYS ASN ARG ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.13 17.14 14.92 11.47 11.05 11.45 8.47 6.33 5.05 5.30 3.83 </line>
<line>PHE CA 16.13 13.79 12.06 8.60 9.29 9.62 6.08 5.48 5.67 3.85 </line>
<line>ALA CA 17.79 15.03 13.23 9.48 9.49 8.32 4.92 5.44 3.88 </line>
<line>ARG CA 18.46 16.23 13.60 9.93 8.41 7.59 5.55 3.72 </line>
<line>ASN CA 14.97 13.06 10.13 6.63 4.97 5.46 3.84 </line>
<line>LYS CA 13.83 11.16 8.96 5.27 5.17 3.80 </line>
<line>THR CA 13.44 11.20 8.45 5.66 3.76 </line>
<line>THR CA 11.19 9.75 6.25 3.88 </line>
<line>TYR CA 8.64 6.46 3.78 </line>
<line>ASN CA 5.06 3.86 </line>
<line>LYS CA 3.77 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>CYS CA 337</line>
<line>PHE CA 395</line>
<line>ALA CA 302</line>
<line>ARG CA 230</line>
<line>ASN CA 264</line>
<line>LYS CA 271</line>
<line>THR CA 189</line>
<line>THR CA 231</line>
<line>TYR CA 307</line>
<line>ASN CA 263</line>
<line>LYS CA 251</line>
<line>LYS CA 224</line>
</n14>
</entryChain>
<parallel>
<x>31.79400062561035</x>
<y>-19.613000869750977</y>
<z>-71.08100128173828</z>
</parallel>
<rotation>
<x>0.6639999747276306</x>
<y>-0.6830000281333923</y>
<z>0.3059999942779541</z>
<x>0.5809999704360962</x>
<y>0.7279999852180481</y>
<z>0.36500000953674316</z>
<x>-0.47099998593330383</x>
<y>-0.06499999761581421</y>
<z>0.8799999952316284</z>
</rotation>
<rmsd>0.6529620289802551</rmsd>
<dmax>1.2245899438858032</dmax>
</indel>