NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1AY4B-1YAAA
confEVID 1AY4B-1YAAA
pdbIDA 1AY4
pdbIDB 1YAA
pdbChainA B
pdbChainB A
identity 0.308800011873245
indelSize 2
alignment <alignment>
<seq1>---MLGNLKPQ-----LALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-ETTKTYAGLSGEPEFQKAMGELILGDGLKSE-----TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD-GLEEDAAGTRLIASRIP---EVLIAASCSKNFGIYRERTGCLLALCAD----AATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV---</seq1>
<seq2>SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVRFYA</seq2>
<ss_1>--- ----- HHHHHHH HHHHHHHHHHHHH- HHHHHHHHHHHHGGGEEGG-----EEEEEEE HHHHHHHHHHHHHHHH EEE HHHHHHH EEEEEEE EEEHHHHHHHGGG EEEE HHHHHHHHHHHHH EEEEEE - GGGHHHHHHHHH --- EEEEEEE EEEEEEE ----HHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGGHHHH HHHHHHHHH EE EEEEEGG HHHHHHHHHHH ---</ss_1>
<ss_2> HHHHHHHH HHHHHHHHHHH HHHHHHHHHHHH --HHHH EEEEEEE HHHHHHHHHHHHHHHH EEE HHHHHH EEEEEEE EEEHHHHHHHHHH EEEE HHHHHHHHHHHHH EEEEEE HHHH HHHHHHHHH EEEEEEE GGG EEEEEEE GGHHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHH HHHHHHHH EEE EEEEGG HHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1AY4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AY4B</entryIDChain>
<sequence>RMLET-ETTKT</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 3369 CA ARG B 59 107.256 38.731 -15.835 1.00 25.75 C </line>
<line>ATOM 3380 CA MET B 60 105.255 36.192 -13.823 1.00 21.99 C </line>
<line>ATOM 3388 CA LEU B 61 102.022 36.854 -15.728 1.00 23.50 C </line>
<line>ATOM 3396 CA GLU B 62 103.964 36.103 -18.888 1.00 21.01 C </line>
<line>ATOM 3405 CA THR B 63 105.767 32.889 -17.817 1.00 18.92 C </line>
<line>ATOM 3412 CA GLU B 64 103.363 30.985 -15.564 1.00 18.24 C </line>
<line>ATOM 3421 CA THR B 66 101.503 28.301 -17.541 1.00 18.86 C </line>
<line>ATOM 3428 CA THR B 67 99.594 26.756 -14.619 1.00 16.89 C </line>
<line>ATOM 3435 CA LYS B 68 98.353 27.333 -11.082 1.00 13.52 C </line>
<line>ATOM 3444 CA THR B 69 98.169 23.672 -9.953 1.00 14.76 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS THR THR GLU THR GLU LEU MET ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 18.55 15.22 14.27 12.03 8.67 6.35 5.20 5.56 3.81 </line>
<line>MET CA 14.90 11.56 11.03 9.50 5.81 5.21 5.23 3.81 </line>
<line>LEU CA 14.90 11.21 10.44 8.76 6.02 5.84 3.78 </line>
<line>GLU CA 16.37 13.01 11.17 8.29 6.13 3.84 </line>
<line>THR CA 14.30 11.45 9.27 6.27 3.81 </line>
<line>GLU CA 10.58 7.65 5.74 3.82 </line>
<line>THR CA 9.49 7.25 3.82 </line>
<line>THR CA 5.77 3.79 </line>
<line>LYS CA 3.84 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ARG CA 231</line>
<line>MET CA 250</line>
<line>LEU CA 188</line>
<line>GLU CA 151</line>
<line>THR CA 166</line>
<line>GLU CA 177</line>
<line>THR CA 115</line>
<line>THR CA 127</line>
<line>LYS CA 166</line>
<line>THR CA 135</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YAAA</entryIDChain>
<sequence>LIHNDSSYNHE</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 446 CA LEU A 59 33.287 16.632 53.261 1.00 19.41 C </line>
<line>ATOM 454 CA ILE A 60 33.790 19.970 55.025 1.00 19.88 C </line>
<line>ATOM 462 CA HIS A 61 30.072 20.370 55.768 1.00 30.74 C </line>
<line>ATOM 472 CA ASN A 62 29.810 16.725 56.798 1.00 33.57 C </line>
<line>ATOM 480 CA ASP A 63 32.421 17.398 59.475 1.00 27.43 C </line>
<line>ATOM 488 CA SER A 64 30.940 17.494 62.992 1.00 31.10 C </line>
<line>ATOM 494 CA SER A 65 33.532 20.097 63.988 1.00 31.42 C </line>
<line>ATOM 500 CA TYR A 66 32.628 22.431 61.093 1.00 15.50 C </line>
<line>ATOM 512 CA ASN A 67 32.690 26.107 62.120 1.00 13.94 C </line>
<line>ATOM 520 CA HIS A 68 33.339 29.724 61.142 1.00 2.11 C </line>
<line>ATOM 530 CA GLU A 69 36.048 30.546 63.728 1.00 10.31 C </line>
</atom-coordinate>
<distance-map>
<line> GLU HIS ASN TYR SER SER ASP ASN HIS ILE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 17.63 15.28 12.99 9.77 11.28 10.05 6.32 4.96 5.53 3.81 </line>
<line>ILE CA 13.88 11.52 9.45 6.65 8.97 8.82 5.32 5.43 3.81 </line>
<line>HIS CA 14.23 11.27 8.95 6.26 8.92 7.82 5.30 3.80 </line>
<line>ASN CA 16.67 14.15 11.16 7.68 8.77 6.34 3.80 </line>
<line>ASP CA 14.29 12.47 9.11 5.29 5.37 3.82 </line>
<line>SER CA 14.04 12.60 8.83 5.55 3.81 </line>
<line>SER CA 10.75 10.04 6.35 3.83 </line>
<line>TYR CA 9.19 7.33 3.82 </line>
<line>ASN CA 5.79 3.80 </line>
<line>HIS CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>LEU CA 246</line>
<line>ILE CA 268</line>
<line>HIS CA 196</line>
<line>ASN CA 159</line>
<line>ASP CA 171</line>
<line>SER CA 112</line>
<line>SER CA 137</line>
<line>TYR CA 184</line>
<line>ASN CA 179</line>
<line>HIS CA 190</line>
<line>GLU CA 179</line>
</n14>
</entryChain>
<parallel>
<x>71.31199645996094</x>
<y>13.385000228881836</y>
<z>-74.66799926757812</z>
</parallel>
<rotation>
<x>0.6740000247955322</x>
<y>-0.34200000762939453</y>
<z>0.6549999713897705</z>
<x>-0.7390000224113464</x>
<y>-0.31200000643730164</y>
<z>0.597000002861023</z>
<x>0.0</x>
<y>-0.8859999775886536</y>
<z>-0.46299999952316284</z>
</rotation>
<rmsd>1.8315260410308838</rmsd>
<dmax>3.937721014022827</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AY4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1AY4B</entryIDChain>
<sequence>QGFGD-GLEED</sequence>
<secondary-structure> - GG</secondary-structure>
<atom-coordinate>
<line>ATOM 4557 CA GLN B 226 115.470 43.625 7.517 1.00 14.95 C </line>
<line>ATOM 4566 CA GLY B 227 116.596 46.590 5.433 1.00 16.96 C </line>
<line>ATOM 4570 CA PHE B 228 114.892 49.396 7.353 1.00 20.49 C </line>
<line>ATOM 4581 CA GLY B 229 117.533 49.992 10.001 1.00 20.91 C </line>
<line>ATOM 4585 CA ASP B 230 121.138 50.217 8.791 1.00 20.69 C </line>
<line>ATOM 4593 CA GLY B 231 121.053 48.083 5.634 1.00 13.73 C </line>
<line>ATOM 4597 CA LEU B 233 120.145 44.605 4.391 1.00 13.06 C </line>
<line>ATOM 4605 CA GLU B 234 123.323 42.919 5.613 1.00 15.14 C </line>
<line>ATOM 4614 CA GLU B 235 123.736 45.090 8.716 1.00 18.31 C </line>
<line>ATOM 4623 CA ASP B 236 120.214 44.372 10.004 1.00 16.77 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLU GLU LEU GLY ASP GLY PHE GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.41 8.48 8.11 5.71 7.39 8.79 7.14 5.80 3.80 </line>
<line>GLY CA 6.24 8.00 7.67 4.20 4.70 6.71 5.77 3.80 </line>
<line>PHE CA 7.78 9.93 10.77 7.70 6.53 6.46 3.79 </line>
<line>GLY CA 6.23 8.01 10.14 8.20 5.92 3.81 </line>
<line>ASP CA 6.04 5.75 8.25 7.20 3.81 </line>
<line>GLY CA 5.79 5.07 5.64 3.80 </line>
<line>LEU CA 5.62 5.64 3.80 </line>
<line>GLU CA 5.57 3.81 </line>
<line>GLU CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLN CA 499</line>
<line>GLY CA 444</line>
<line>PHE CA 474</line>
<line>GLY CA 446</line>
<line>ASP CA 343</line>
<line>GLY CA 328</line>
<line>LEU CA 386</line>
<line>GLU CA 308</line>
<line>GLU CA 305</line>
<line>ASP CA 411</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1YAAA</entryIDChain>
<sequence>QGFATGDLDKD</sequence>
<secondary-structure> HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1700 CA GLN A 226 49.313 27.053 37.178 1.00 13.08 C </line>
<line>ATOM 1709 CA GLY A 227 47.596 24.160 35.413 1.00 15.09 C </line>
<line>ATOM 1713 CA PHE A 228 45.997 26.144 32.578 1.00 19.21 C </line>
<line>ATOM 1724 CA ALA A 229 48.956 26.638 30.248 1.00 18.04 C </line>
<line>ATOM 1729 CA THR A 230 49.746 22.975 29.495 1.00 17.95 C </line>
<line>ATOM 1736 CA GLY A 231 47.087 21.468 31.727 1.00 18.52 C </line>
<line>ATOM 1740 CA ASP A 232 49.939 19.910 33.723 1.00 16.84 C </line>
<line>ATOM 1748 CA LEU A 233 50.879 21.350 37.113 1.00 15.03 C </line>
<line>ATOM 1756 CA ASP A 234 54.558 20.358 37.041 1.00 16.79 C </line>
<line>ATOM 1764 CA LYS A 235 55.008 21.467 33.433 1.00 23.20 C </line>
<line>ATOM 1773 CA ASP A 236 53.521 24.870 34.339 1.00 16.71 C </line>
</atom-coordinate>
<distance-map>
<line> ASP LYS ASP LEU ASP GLY THR ALA PHE GLY GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.53 8.81 8.51 5.91 7.96 8.12 8.71 6.95 5.74 3.80 </line>
<line>GLY CA 6.06 8.13 8.10 4.64 5.14 4.59 6.41 5.89 3.81 </line>
<line>PHE CA 7.83 10.19 11.26 8.21 7.46 4.88 5.80 3.80 </line>
<line>ALA CA 6.38 8.57 10.82 8.88 7.64 5.69 3.82 </line>
<line>THR CA 6.43 6.74 9.32 7.87 5.23 3.78 </line>
<line>GLY CA 7.73 8.10 9.24 6.59 3.81 </line>
<line>ASP CA 6.15 5.31 5.70 3.80 </line>
<line>LEU CA 5.20 5.53 3.81 </line>
<line>ASP CA 5.36 3.80 </line>
<line>LYS CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLN CA 501</line>
<line>GLY CA 444</line>
<line>PHE CA 479</line>
<line>ALA CA 442</line>
<line>THR CA 342</line>
<line>GLY CA 333</line>
<line>ASP CA 310</line>
<line>LEU CA 383</line>
<line>ASP CA 315</line>
<line>LYS CA 286</line>
<line>ASP CA 402</line>
</n14>
</entryChain>
<parallel>
<x>69.14600372314453</x>
<y>23.354999542236328</y>
<z>-27.256999969482422</z>
</parallel>
<rotation>
<x>0.6710000038146973</x>
<y>-0.5419999957084656</y>
<z>0.5059999823570251</z>
<x>-0.6919999718666077</x>
<y>-0.21400000154972076</y>
<z>0.6899999976158142</z>
<x>-0.26499998569488525</x>
<y>-0.8130000233650208</y>
<z>-0.5180000066757202</z>
</rotation>
<rmsd>0.6203410029411316</rmsd>
<dmax>1.1409460306167603</dmax>
</indel>