NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B04B-3BAAA
confEVID 1B04B-3BAAA
pdbIDA 1B04
pdbIDB 3BAA
pdbChainA B
pdbChainB A
identity 0.580099999904633
indelSize 2
alignment <alignment>
<seq1>MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVRQEV-GEAAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVSLEARGEAFMPKASFLRLNEERKAR--ELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPAE</seq1>
<seq2>LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGGKVLSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMRLTEPISVEVRGECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFP--</seq2>
<ss_1> HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHH- EEEEEEE EEEEEEEE EEE EEE HHHGGG EEEEEEEE HHHHHHHHHHHH -- HHHHHHHH HHHH EEE HHHHHHHHHH EEE HHHHHHHHHHHHHHGGG EEEEEEEE HHHHHHHEEE EEEEE </ss_1>
<ss_2> HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHH GGG EEE HHHHHHHHHHHHHHH EEEEEEE EEEEEEEE EEEEE EEEE HHHGGG EEEEEEEE HHHHHHHHHHHH HHHHHHHH HHHGGG EEE HHHHHHHHHH EEE HHHHHHHHHHHHHHGGG EEEEEEEE HHHHHHH EEEEE --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B04</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B04B</entryIDChain>
<sequence>VRQEV-GEAAY</sequence>
<secondary-structure>HHHHH- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 3283 CA VAL B 100 35.347 76.025 35.034 1.00 32.41 C </line>
<line>ATOM 3290 CA ARG B 101 34.252 78.511 37.724 1.00 30.41 C </line>
<line>ATOM 3301 CA GLN B 102 33.953 75.885 40.454 1.00 33.22 C </line>
<line>ATOM 3310 CA GLU B 103 37.599 74.988 40.026 1.00 37.15 C </line>
<line>ATOM 3319 CA VAL B 104 39.584 78.148 39.166 1.00 29.90 C </line>
<line>ATOM 3326 CA GLY B 105 37.136 81.077 39.433 1.00 34.51 C </line>
<line>ATOM 3330 CA GLU B 106 36.296 83.429 36.643 1.00 39.20 C </line>
<line>ATOM 3339 CA ALA B 107 38.662 82.315 33.857 1.00 38.12 C </line>
<line>ATOM 3344 CA ALA B 108 39.097 84.179 30.494 1.00 30.89 C </line>
<line>ATOM 3349 CA TYR B 109 38.563 82.170 27.273 1.00 29.94 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ALA ALA GLU GLY VAL GLU GLN ARG VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 10.41 10.06 7.21 7.64 6.93 6.29 5.57 5.60 3.82 </line>
<line>ARG CA 11.88 10.39 6.99 5.43 4.22 5.54 5.38 3.80 </line>
<line>GLN CA 15.31 13.94 10.35 8.77 6.18 6.20 3.78 </line>
<line>GLU CA 14.67 13.33 9.64 9.19 6.14 3.83 </line>
<line>VAL CA 12.60 10.57 6.81 6.71 3.83 </line>
<line>GLY CA 12.29 9.66 5.91 3.74 </line>
<line>GLU CA 9.72 6.80 3.82 </line>
<line>ALA CA 6.59 3.87 </line>
<line>ALA CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>VAL CA 339</line>
<line>ARG CA 266</line>
<line>GLN CA 197</line>
<line>GLU CA 216</line>
<line>VAL CA 229</line>
<line>GLY CA 213</line>
<line>GLU CA 250</line>
<line>ALA CA 332</line>
<line>ALA CA 353</line>
<line>TYR CA 427</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BAAA</entryIDChain>
<sequence>VRKAIGKPVAY</sequence>
<secondary-structure>HHHHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 852 CA VAL A 105 19.738 36.632 69.191 1.00 17.18 C </line>
<line>ATOM 859 CA ARG A 106 17.510 37.266 72.198 1.00 18.26 C </line>
<line>ATOM 870 CA LYS A 107 20.572 37.540 74.433 1.00 19.45 C </line>
<line>ATOM 879 CA ALA A 108 22.023 40.277 72.194 1.00 18.20 C </line>
<line>ATOM 884 CA ILE A 109 18.799 42.188 71.449 1.00 19.64 C </line>
<line>ATOM 892 CA GLY A 110 17.241 41.893 74.909 1.00 24.34 C </line>
<line>ATOM 896 CA LYS A 111 13.722 40.908 73.827 1.00 25.77 C </line>
<line>ATOM 905 CA PRO A 112 11.769 38.403 71.695 1.00 23.28 C </line>
<line>ATOM 913 CA AVAL A 113 12.380 38.880 67.964 0.50 22.03 C </line>
<line>ATOM 926 CA ALA A 114 10.343 38.084 64.856 1.00 20.23 C </line>
<line>ATOM 931 CA TYR A 115 11.899 36.147 61.967 1.00 18.16 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ALA VAL PRO LYS GLY ILE ALA LYS ARG VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 10.67 10.45 7.79 8.54 8.72 8.16 6.07 5.25 5.39 3.80 </line>
<line>ARG CA 11.72 10.29 6.84 5.87 5.50 5.37 5.14 5.43 3.80 </line>
<line>LYS CA 15.25 14.02 10.52 9.26 7.66 5.50 5.80 3.82 </line>
<line>ALA CA 14.97 13.97 10.62 10.44 8.48 5.73 3.82 </line>
<line>ILE CA 13.19 11.48 8.02 7.99 5.75 3.81 </line>
<line>GLY CA 15.13 12.77 9.00 7.24 3.81 </line>
<line>LYS CA 12.91 9.99 6.35 3.83 </line>
<line>PRO CA 9.99 6.99 3.81 </line>
<line>VAL CA 6.61 3.80 </line>
<line>ALA CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>VAL CA 339</line>
<line>ARG CA 271</line>
<line>LYS CA 188</line>
<line>ALA CA 222</line>
<line>ILE CA 232</line>
<line>GLY CA 161</line>
<line>LYS CA 187</line>
<line>PRO CA 254</line>
<line>VAL CA 340</line>
<line>ALA CA 385</line>
<line>TYR CA 459</line>
</n14>
</entryChain>
<parallel>
<x>19.540000915527344</x>
<y>39.78499984741211</y>
<z>-33.82699966430664</z>
</parallel>
<rotation>
<x>-0.027000000700354576</x>
<y>-0.9760000109672546</y>
<z>0.2150000035762787</z>
<x>0.890999972820282</x>
<y>0.07400000095367432</y>
<z>0.4480000138282776</z>
<x>-0.45399999618530273</x>
<y>0.20399999618530273</y>
<z>0.8679999709129333</z>
</rotation>
<rmsd>0.8326209783554077</rmsd>
<dmax>1.6434170007705688</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1B04</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B04B</entryIDChain>
<sequence>ERKAR--ELFAN</sequence>
<secondary-structure>HHHH -- </secondary-structure>
<atom-coordinate>
<line>ATOM 3923 CA GLU B 183 35.543 71.606 -14.188 1.00 65.88 C </line>
<line>ATOM 3932 CA ARG B 184 34.777 68.094 -12.995 1.00 72.42 C </line>
<line>ATOM 3943 CA LYS B 185 31.167 68.401 -14.399 1.00 78.17 C </line>
<line>ATOM 3952 CA ALA B 186 32.633 69.022 -17.881 1.00 82.13 C </line>
<line>ATOM 3957 CA ARG B 187 34.530 65.683 -17.570 1.00 87.66 C </line>
<line>ATOM 3968 CA GLU B 190 32.573 63.271 -11.550 1.00 91.29 C </line>
<line>ATOM 3977 CA LEU B 191 32.226 65.265 -8.307 1.00 80.29 C </line>
<line>ATOM 3985 CA PHE B 192 32.931 66.448 -4.783 1.00 66.77 C </line>
<line>ATOM 3996 CA ALA B 193 30.604 66.345 -1.793 1.00 52.52 C </line>
<line>ATOM 4001 CA ASN B 194 31.690 69.631 -0.002 1.00 45.69 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA PHE LEU GLU ARG ALA LYS ARG GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.83 14.34 11.04 9.26 9.23 6.90 5.37 5.43 3.79 </line>
<line>ARG CA 13.44 12.08 8.58 6.04 5.50 5.18 5.42 3.89 </line>
<line>LYS CA 14.46 12.78 9.97 6.93 6.03 5.36 3.83 </line>
<line>ALA CA 17.91 16.43 13.35 10.29 8.55 3.85 </line>
<line>ARG CA 18.23 16.27 12.91 9.55 6.77 </line>
<line>GLU CA 13.21 10.42 7.48 3.82 </line>
<line>LEU CA 9.40 6.80 3.78 </line>
<line>PHE CA 5.88 3.79 </line>
<line>ALA CA 3.90 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLU CA 180</line>
<line>ARG CA 183</line>
<line>LYS CA 138</line>
<line>ALA CA 110</line>
<line>ARG CA 108</line>
<line>GLU CA 148</line>
<line>LEU CA 202</line>
<line>PHE CA 259</line>
<line>ALA CA 222</line>
<line>ASN CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BAAA</entryIDChain>
<sequence>EREENGQDIFAN</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1506 CA GLU A 189 20.054 16.786 25.959 1.00 21.04 C </line>
<line>ATOM 1515 CA ARG A 190 23.643 16.458 27.169 1.00 19.54 C </line>
<line>ATOM 1526 CA GLU A 191 23.345 12.653 27.271 1.00 21.53 C </line>
<line>ATOM 1535 CA GLU A 192 22.102 12.797 23.676 1.00 24.88 C </line>
<line>ATOM 1544 CA ASN A 193 25.142 14.843 22.685 1.00 28.11 C </line>
<line>ATOM 1552 CA GLY A 194 27.786 12.797 24.487 1.00 26.40 C </line>
<line>ATOM 1556 CA GLN A 195 28.310 15.469 27.143 1.00 26.35 C </line>
<line>ATOM 1565 CA ASP A 196 28.804 15.150 30.887 1.00 24.19 C </line>
<line>ATOM 1573 CA ILE A 197 25.575 15.695 32.815 1.00 20.97 C </line>
<line>ATOM 1581 CA PHE A 198 25.273 18.224 35.638 1.00 22.09 C </line>
<line>ATOM 1592 CA ALA A 199 25.296 16.553 39.067 1.00 23.30 C </line>
<line>ATOM 1597 CA ASN A 200 22.548 18.841 40.351 1.00 24.35 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA PHE ILE ASP GLN GLY ASN GLU GLU ARG GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.75 14.12 11.09 8.87 10.17 8.44 8.82 6.35 5.03 5.44 3.80 </line>
<line>ARG CA 13.44 12.01 8.80 6.02 6.49 4.77 6.14 5.00 5.29 3.82 </line>
<line>GLU CA 14.49 12.58 10.24 6.71 7.01 5.71 5.24 5.39 3.81 </line>
<line>GLU CA 17.74 16.16 13.51 10.20 10.12 7.60 5.74 3.80 </line>
<line>ASN CA 18.30 16.47 13.39 10.17 8.99 5.50 3.80 </line>
<line>GLY CA 17.77 15.26 12.65 9.09 6.89 3.80 </line>
<line>GLN CA 14.80 12.35 9.43 6.30 3.79 </line>
<line>ASP CA 11.93 9.01 6.67 3.80 </line>
<line>ILE CA 8.71 6.32 3.80 </line>
<line>PHE CA 5.48 3.81 </line>
<line>ALA CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLU CA 198</line>
<line>ARG CA 205</line>
<line>GLU CA 150</line>
<line>GLU CA 125</line>
<line>ASN CA 126</line>
<line>GLY CA 117</line>
<line>GLN CA 155</line>
<line>ASP CA 181</line>
<line>ILE CA 228</line>
<line>PHE CA 278</line>
<line>ALA CA 222</line>
<line>ASN CA 293</line>
</n14>
</entryChain>
<parallel>
<x>9.055000305175781</x>
<y>51.89799880981445</y>
<z>-40.97200012207031</z>
</parallel>
<rotation>
<x>0.019999999552965164</x>
<y>-1.0</y>
<z>-0.004000000189989805</z>
<x>0.9259999990463257</x>
<y>0.017000000923871994</y>
<z>0.3779999911785126</z>
<x>-0.3779999911785126</x>
<y>-0.010999999940395355</y>
<z>0.9259999990463257</z>
</rotation>
<rmsd>0.6981369853019714</rmsd>
<dmax>1.3911559581756592</dmax>
</indel>