NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B04B-3BACA
confEVID 1B04B-3BACA
pdbIDA 1B04
pdbIDB 3BAC
pdbChainA B
pdbChainB A
identity 0.460599988698959
indelSize 3
alignment <alignment>
<seq1>MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVRQEVGE----AAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPV---SLEARGEAFMPKASFLRLNEERKAR--ELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGI-ASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQ---LPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPAE----</seq1>
<seq2>----------------------------------------------------------------------GFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVGLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLDFYQDI---QNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPAQEELT</seq2>
<ss_1> HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHH ---- EEEEEEE EEEEEEEE EEE EEE HHHGGG --- EEEEEEEE HHHHHHHHHHHH -- HHHHHHHH HHHH EEE - HHHHHHHHHH EEE HHHHHHHHHHHHHHGGG--- EEEEEEEE HHHHHHHEEE EEEEE ----</ss_1>
<ss_2>---------------------------------------------------------------------- EEE HHHHHHHHHHHHHH EEEEEEEE EEEEEEEE EEEEE EEEE HHHHH EEEEEEEEEE HHHHHHHHHHH HHHHHHH GGG EEE HHHHHHHHHH EEEEEHHHHHHHHHHH---GGG EEEEEEE HHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B04</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B04B</entryIDChain>
<sequence>QEVGE----AAYVC</sequence>
<secondary-structure>HHH ---- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3301 CA GLN B 102 33.953 75.885 40.454 1.00 33.22 C </line>
<line>ATOM 3310 CA GLU B 103 37.599 74.988 40.026 1.00 37.15 C </line>
<line>ATOM 3319 CA VAL B 104 39.584 78.148 39.166 1.00 29.90 C </line>
<line>ATOM 3326 CA GLY B 105 37.136 81.077 39.433 1.00 34.51 C </line>
<line>ATOM 3330 CA GLU B 106 36.296 83.429 36.643 1.00 39.20 C </line>
<line>ATOM 3339 CA ALA B 107 38.662 82.315 33.857 1.00 38.12 C </line>
<line>ATOM 3344 CA ALA B 108 39.097 84.179 30.494 1.00 30.89 C </line>
<line>ATOM 3349 CA TYR B 109 38.563 82.170 27.273 1.00 29.94 C </line>
<line>ATOM 3361 CA VAL B 110 39.717 82.340 23.645 1.00 29.55 C </line>
<line>ATOM 3368 CA CYS B 111 37.132 81.875 20.867 1.00 32.09 C </line>
</atom-coordinate>
<distance-map>
<line> CYS VAL TYR ALA ALA GLU GLY VAL GLU GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 20.73 18.91 15.31 13.94 10.35 8.77 6.18 6.20 3.78 </line>
<line>GLU CA 20.36 18.08 14.67 13.33 9.64 9.19 6.14 3.83 </line>
<line>VAL CA 18.83 16.08 12.60 10.57 6.81 6.71 3.83 </line>
<line>GLY CA 18.58 16.05 12.29 9.66 5.91 3.74 </line>
<line>GLU CA 15.87 13.48 9.72 6.80 3.82 </line>
<line>ALA CA 13.09 10.27 6.59 3.87 </line>
<line>ALA CA 10.09 7.12 3.83 </line>
<line>TYR CA 6.57 3.81 </line>
<line>VAL CA 3.82 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLN CA 197</line>
<line>GLU CA 216</line>
<line>VAL CA 229</line>
<line>GLY CA 213</line>
<line>GLU CA 250</line>
<line>ALA CA 332</line>
<line>ALA CA 353</line>
<line>TYR CA 427</line>
<line>VAL CA 448</line>
<line>CYS CA 472</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BAC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BACA</entryIDChain>
<sequence>DRLILLPKPLTFCC</sequence>
<secondary-structure>HH EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 254 CA ASP A 100 95.367 88.021 68.781 1.00 89.99 C </line>
<line>ATOM 262 CA ARG A 101 97.759 90.976 68.443 1.00 69.14 C </line>
<line>ATOM 273 CA LEU A 102 99.826 90.018 71.480 1.00105.92 C </line>
<line>ATOM 281 CA ILE A 103 102.678 87.658 70.659 1.00114.22 C </line>
<line>ATOM 289 CA LEU A 104 101.817 85.423 73.621 1.00 98.28 C </line>
<line>ATOM 297 CA LEU A 105 98.777 85.797 75.878 1.00121.70 C </line>
<line>ATOM 305 CA PRO A 106 100.049 85.710 79.496 1.00147.76 C </line>
<line>ATOM 312 CA LYS A 107 96.656 84.457 80.699 1.00107.31 C </line>
<line>ATOM 321 CA PRO A 108 94.486 85.919 81.797 1.00116.20 C </line>
<line>ATOM 328 CA LEU A 109 95.575 89.527 81.068 1.00 71.37 C </line>
<line>ATOM 336 CA THR A 110 95.401 92.112 83.832 1.00 63.64 C </line>
<line>ATOM 343 CA PHE A 111 93.730 95.481 83.339 1.00 51.41 C </line>
<line>ATOM 354 CA CYS A 112 94.085 98.489 85.589 1.00 45.29 C </line>
<line>ATOM 360 CA CYS A 113 90.449 99.462 85.910 1.00 60.98 C </line>
</atom-coordinate>
<distance-map>
<line> CYS CYS PHE THR LEU PRO LYS PRO LEU LEU ILE LEU ARG ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 21.18 19.84 16.44 15.60 12.38 13.21 12.51 11.92 8.18 8.47 7.56 5.58 3.82 </line>
<line>ARG CA 20.75 19.08 16.08 15.61 12.89 14.65 13.93 12.46 9.12 8.61 6.33 3.80 </line>
<line>LEU CA 19.63 17.43 14.41 13.29 10.50 12.32 11.22 9.10 6.19 5.45 3.79 </line>
<line>ILE CA 22.84 20.35 17.38 15.69 12.74 13.94 12.14 9.42 6.78 3.81 </line>
<line>LEU CA 21.85 19.33 16.16 13.79 10.55 10.99 8.81 6.14 3.80 </line>
<line>LEU CA 18.89 16.66 13.23 10.70 7.15 7.31 5.43 3.84 </line>
<line>PRO CA 17.96 15.36 12.25 9.02 6.09 6.02 3.81 </line>
<line>LYS CA 17.05 15.08 11.71 8.37 5.20 2.84 </line>
<line>PRO CA 14.72 13.14 9.71 6.58 3.84 </line>
<line>LEU CA 12.18 10.15 6.63 3.79 </line>
<line>THR CA 9.10 6.74 3.79 </line>
<line>PHE CA 5.76 3.77 </line>
<line>CYS CA 3.78 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>ASP CA 179</line>
<line>ARG CA 202</line>
<line>LEU CA 225</line>
<line>ILE CA 169</line>
<line>LEU CA 168</line>
<line>LEU CA 212</line>
<line>PRO CA 201</line>
<line>LYS CA 205</line>
<line>PRO CA 237</line>
<line>LEU CA 335</line>
<line>THR CA 354</line>
<line>PHE CA 402</line>
<line>CYS CA 416</line>
<line>CYS CA 434</line>
</n14>
</entryChain>
<parallel>
<x>-60.15800094604492</x>
<y>-9.628000259399414</y>
<z>-39.23500061035156</z>
</parallel>
<rotation>
<x>0.6169999837875366</x>
<y>0.4790000021457672</y>
<z>0.625</z>
<x>0.7760000228881836</x>
<y>-0.5</y>
<z>-0.382999986410141</z>
<x>0.1289999932050705</x>
<y>0.7210000157356262</y>
<z>-0.6800000071525574</z>
</rotation>
<rmsd>2.911773920059204</rmsd>
<dmax>4.564589977264404</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1B04</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B04B</entryIDChain>
<sequence>ERKAR--ELFAN</sequence>
<secondary-structure>HHHH -- </secondary-structure>
<atom-coordinate>
<line>ATOM 3923 CA GLU B 183 35.543 71.606 -14.188 1.00 65.88 C </line>
<line>ATOM 3932 CA ARG B 184 34.777 68.094 -12.995 1.00 72.42 C </line>
<line>ATOM 3943 CA LYS B 185 31.167 68.401 -14.399 1.00 78.17 C </line>
<line>ATOM 3952 CA ALA B 186 32.633 69.022 -17.881 1.00 82.13 C </line>
<line>ATOM 3957 CA ARG B 187 34.530 65.683 -17.570 1.00 87.66 C </line>
<line>ATOM 3968 CA GLU B 190 32.573 63.271 -11.550 1.00 91.29 C </line>
<line>ATOM 3977 CA LEU B 191 32.226 65.265 -8.307 1.00 80.29 C </line>
<line>ATOM 3985 CA PHE B 192 32.931 66.448 -4.783 1.00 66.77 C </line>
<line>ATOM 3996 CA ALA B 193 30.604 66.345 -1.793 1.00 52.52 C </line>
<line>ATOM 4001 CA ASN B 194 31.690 69.631 -0.002 1.00 45.69 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA PHE LEU GLU ARG ALA LYS ARG GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 14.83 14.34 11.04 9.26 9.23 6.90 5.37 5.43 3.79 </line>
<line>ARG CA 13.44 12.08 8.58 6.04 5.50 5.18 5.42 3.89 </line>
<line>LYS CA 14.46 12.78 9.97 6.93 6.03 5.36 3.83 </line>
<line>ALA CA 17.91 16.43 13.35 10.29 8.55 3.85 </line>
<line>ARG CA 18.23 16.27 12.91 9.55 6.77 </line>
<line>GLU CA 13.21 10.42 7.48 3.82 </line>
<line>LEU CA 9.40 6.80 3.78 </line>
<line>PHE CA 5.88 3.79 </line>
<line>ALA CA 3.90 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLU CA 180</line>
<line>ARG CA 183</line>
<line>LYS CA 138</line>
<line>ALA CA 110</line>
<line>ARG CA 108</line>
<line>GLU CA 148</line>
<line>LEU CA 202</line>
<line>PHE CA 259</line>
<line>ALA CA 222</line>
<line>ASN CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BAC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BACA</entryIDChain>
<sequence>YALEHNEKTFAN</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 933 CA TYR A 188 74.468 131.412 93.365 1.00 39.82 C </line>
<line>ATOM 945 CA ALA A 189 74.191 131.913 89.592 1.00 39.09 C </line>
<line>ATOM 950 CA LEU A 190 70.401 131.558 89.460 1.00 48.14 C </line>
<line>ATOM 958 CA GLU A 191 69.840 133.739 92.507 1.00 37.44 C </line>
<line>ATOM 967 CA HIS A 192 72.062 136.403 90.893 1.00 50.55 C </line>
<line>ATOM 977 CA ASN A 193 70.535 136.384 87.437 1.00 47.10 C </line>
<line>ATOM 985 CA GLU A 194 73.116 134.284 85.557 1.00 48.28 C </line>
<line>ATOM 994 CA LYS A 195 72.836 131.248 83.295 1.00 48.19 C </line>
<line>ATOM 1003 CA THR A 196 73.553 128.120 85.320 1.00 46.89 C </line>
<line>ATOM 1010 CA PHE A 197 75.995 125.458 84.117 1.00 37.40 C </line>
<line>ATOM 1021 CA ALA A 198 74.268 122.514 82.466 1.00 35.59 C </line>
<line>ATOM 1026 CA ASN A 199 76.504 120.008 84.229 1.00 46.09 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ALA PHE THR LYS GLU ASN HIS GLU LEU ALA TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 14.75 14.07 11.10 8.74 10.20 8.43 8.68 6.07 5.25 5.64 3.82 </line>
<line>ALA CA 13.26 11.80 8.65 5.75 6.48 4.80 6.16 5.14 5.55 3.81 </line>
<line>LEU CA 14.07 12.07 9.85 6.24 6.64 5.48 5.23 5.32 3.79 </line>
<line>GLU CA 17.36 15.70 13.30 9.85 10.00 7.70 5.76 3.83 </line>
<line>HIS CA 18.25 16.39 13.46 10.09 9.21 5.84 3.78 </line>
<line>ASN CA 17.72 15.20 12.66 9.05 6.99 3.82 </line>
<line>GLU CA 14.73 12.22 9.39 6.18 3.80 </line>
<line>LYS CA 11.86 8.89 6.65 3.79 </line>
<line>THR CA 8.70 6.33 3.81 </line>
<line>PHE CA 5.47 3.79 </line>
<line>ALA CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>TYR CA 191</line>
<line>ALA CA 211</line>
<line>LEU CA 154</line>
<line>GLU CA 124</line>
<line>HIS CA 123</line>
<line>ASN CA 115</line>
<line>GLU CA 148</line>
<line>LYS CA 174</line>
<line>THR CA 226</line>
<line>PHE CA 270</line>
<line>ALA CA 212</line>
<line>ASN CA 286</line>
</n14>
</entryChain>
<parallel>
<x>-39.62099838256836</x>
<y>-64.00800323486328</y>
<z>-101.27799987792969</z>
</parallel>
<rotation>
<x>0.8999999761581421</x>
<y>0.029999999329447746</y>
<z>0.4339999854564667</z>
<x>0.3919999897480011</x>
<y>-0.4909999966621399</y>
<z>-0.777999997138977</z>
<x>0.1899999976158142</x>
<y>0.8700000047683716</y>
<z>-0.45399999618530273</z>
</rotation>
<rmsd>0.7903710007667542</rmsd>
<dmax>1.3955409526824951</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1B04</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B04B</entryIDChain>
<sequence>EALGI-ASHSE</sequence>
<secondary-structure> - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4247 CA GLU B 227 55.095 74.662 27.721 1.00 34.82 C </line>
<line>ATOM 4256 CA ALA B 228 58.628 73.384 26.848 1.00 29.68 C </line>
<line>ATOM 4261 CA LEU B 229 58.949 76.397 24.517 1.00 29.86 C </line>
<line>ATOM 4269 CA GLY B 230 57.961 78.660 27.381 1.00 26.01 C </line>
<line>ATOM 4273 CA ILE B 231 54.493 79.639 26.135 1.00 30.23 C </line>
<line>ATOM 4281 CA ALA B 232 51.864 80.174 28.985 1.00 30.25 C </line>
<line>ATOM 4286 CA SER B 233 48.395 80.821 27.443 1.00 31.67 C </line>
<line>ATOM 4292 CA HIS B 234 46.745 79.870 24.177 1.00 34.44 C </line>
<line>ATOM 4302 CA SER B 235 46.406 83.391 22.792 1.00 34.62 C </line>
<line>ATOM 4308 CA GLU B 236 50.169 83.808 23.341 1.00 32.14 C </line>
</atom-coordinate>
<distance-map>
<line> GLU SER HIS SER ALA ILE GLY LEU ALA GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 11.27 13.27 10.46 9.10 6.51 5.26 4.93 5.30 3.86 </line>
<line>ALA CA 13.87 16.31 13.80 12.66 9.82 7.53 5.34 3.82 </line>
<line>LEU CA 11.55 14.46 12.69 11.81 9.19 5.74 3.78 </line>
<line>GLY CA 10.18 13.30 11.73 9.81 6.48 3.81 </line>
<line>ILE CA 6.62 9.52 7.99 6.35 3.91 </line>
<line>ALA CA 6.92 8.86 7.03 3.85 </line>
<line>SER CA 5.38 5.67 3.78 </line>
<line>HIS CA 5.28 3.80 </line>
<line>SER CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>GLU CA 220</line>
<line>ALA CA 160</line>
<line>LEU CA 213</line>
<line>GLY CA 179</line>
<line>ILE CA 240</line>
<line>ALA CA 247</line>
<line>SER CA 326</line>
<line>HIS CA 403</line>
<line>SER CA 373</line>
<line>GLU CA 314</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3BAC</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3BACA</entryIDChain>
<sequence>EGVGLPTTHYA</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1269 CA GLU A 232 113.223 111.852 83.746 1.00 52.08 C </line>
<line>ATOM 1278 CA GLY A 233 114.950 111.573 87.075 1.00 68.12 C </line>
<line>ATOM 1282 CA VAL A 234 113.063 108.283 87.638 1.00 44.59 C </line>
<line>ATOM 1289 CA GLY A 235 112.657 104.620 86.867 1.00 40.27 C </line>
<line>ATOM 1293 CA LEU A 236 108.878 104.260 86.934 1.00 55.62 C </line>
<line>ATOM 1301 CA PRO A 237 107.469 100.864 88.012 1.00 41.86 C </line>
<line>ATOM 1308 CA THR A 238 106.590 98.318 85.364 1.00 52.74 C </line>
<line>ATOM 1315 CA THR A 239 102.855 98.399 85.924 1.00 51.74 C </line>
<line>ATOM 1322 CA HIS A 240 100.480 101.288 85.433 1.00 56.25 C </line>
<line>ATOM 1332 CA TYR A 241 98.827 100.518 88.773 1.00 33.01 C </line>
<line>ATOM 1344 CA ALA A 242 102.233 100.522 90.455 1.00 31.97 C </line>
</atom-coordinate>
<distance-map>
<line> ALA TYR HIS THR THR PRO LEU GLY VAL GLY GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 17.15 19.00 16.64 17.12 15.16 13.12 9.31 7.90 5.28 3.76 </line>
<line>GLY CA 17.18 19.62 17.83 17.92 15.76 13.10 9.51 7.32 3.83 </line>
<line>VAL CA 13.62 16.26 14.56 14.31 12.10 9.30 5.85 3.77 </line>
<line>GLY CA 11.76 14.55 12.71 11.65 8.88 6.51 3.80 </line>
<line>LEU CA 8.40 10.88 9.03 8.46 6.56 3.83 </line>
<line>PRO CA 5.79 8.68 7.46 5.63 3.78 </line>
<line>THR CA 7.05 8.76 6.79 3.78 </line>
<line>THR CA 5.04 5.37 3.77 </line>
<line>HIS CA 5.37 3.81 </line>
<line>TYR CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLU CA 222</line>
<line>GLY CA 214</line>
<line>VAL CA 241</line>
<line>GLY CA 198</line>
<line>LEU CA 276</line>
<line>PRO CA 235</line>
<line>THR CA 225</line>
<line>THR CA 297</line>
<line>HIS CA 376</line>
<line>TYR CA 363</line>
<line>ALA CA 299</line>
</n14>
</entryChain>
<parallel>
<x>-55.07099914550781</x>
<y>-26.87299919128418</y>
<z>-59.47200012207031</z>
</parallel>
<rotation>
<x>0.8849999904632568</x>
<y>0.014000000432133675</y>
<z>0.4650000035762787</z>
<x>0.24699999392032623</x>
<y>-0.8610000014305115</y>
<z>-0.4449999928474426</z>
<x>0.39399999380111694</x>
<y>0.5090000033378601</y>
<z>-0.7649999856948853</z>
</rotation>
<rmsd>2.822293996810913</rmsd>
<dmax>5.192728042602539</dmax>
</indel>