NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B06A-2GDSB
confEVID 1B06A-2GDSB
pdbIDA 1B06
pdbIDB 2GDS
pdbChainA A
pdbChainB B
identity 0.381599992513657
indelSize 2
alignment <alignment>
<seq1>VIQLKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRL-EKLIKGDLPQGQYDLQGILR---GLTFNINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVENH-FMNHIAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNVVNWDDAEKRLQKYLNK</seq1>
<seq2>-----KHSLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLNVTEEKYQEALAKGD-------VTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK-</seq2>
<ss_1> HHHHHHIIIIHHHHHHHHHHHHHHHH-HHHH HHHHHH---HHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHH EEEEEEEEE EEEEEEEE - EEE HHHH HHHHHHHGGGGEEHHHHHHHHH </ss_1>
<ss_2>----- HHHHHHIIIIHHHHHHHHHHHHHHHHHHHHH -------HHHHHH HHHHHHHHHHHHHHHHHH -- HHHHHHHH HHHHHHHHHHHHHH EEEEEEEEE EEEEEEE EEE HHHH HHHHHHHGGG EEHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B06</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B06A</entryIDChain>
<sequence>TVENH-FMNHI</sequence>
<secondary-structure>EEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 1172 CA THR A 151 72.987 53.888 41.404 1.00 8.72 C </line>
<line>ATOM 1179 CA VAL A 152 73.372 50.116 41.626 1.00 9.31 C </line>
<line>ATOM 1186 CA GLU A 153 76.147 48.431 39.644 1.00 11.58 C </line>
<line>ATOM 1195 CA ASN A 154 75.213 45.098 38.061 1.00 11.71 C </line>
<line>ATOM 1203 CA HIS A 155 72.344 43.627 40.091 1.00 11.63 C </line>
<line>ATOM 1213 CA PHE A 156 74.136 43.427 43.435 1.00 12.26 C </line>
<line>ATOM 1224 CA MET A 157 76.514 46.318 44.061 1.00 13.69 C </line>
<line>ATOM 1232 CA ASN A 158 75.640 49.458 46.076 1.00 12.61 C </line>
<line>ATOM 1240 CA HIS A 159 72.342 48.382 47.641 1.00 8.01 C </line>
<line>ATOM 1250 CA ILE A 160 71.661 49.884 51.044 1.00 12.95 C </line>
</atom-coordinate>
<distance-map>
<line> ILE HIS ASN MET PHE HIS ASN GLU VAL THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 10.52 8.34 6.96 8.76 10.72 10.36 9.66 6.55 3.80 </line>
<line>VAL CA 9.57 6.34 5.04 5.50 6.97 6.75 6.42 3.80 </line>
<line>GLU CA 12.34 8.86 6.53 4.91 6.59 6.14 3.81 </line>
<line>ASN CA 14.29 10.53 9.13 6.26 5.73 3.81 </line>
<line>HIS CA 12.63 8.92 8.98 6.36 3.80 </line>
<line>PHE CA 10.28 6.74 6.75 3.80 </line>
<line>MET CA 9.22 5.87 3.83 </line>
<line>ASN CA 6.38 3.81 </line>
<line>HIS CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>THR CA 374</line>
<line>VAL CA 387</line>
<line>GLU CA 316</line>
<line>ASN CA 349</line>
<line>HIS CA 414</line>
<line>PHE CA 337</line>
<line>MET CA 283</line>
<line>ASN CA 275</line>
<line>HIS CA 308</line>
<line>ILE CA 264</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GDS</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2GDSB</entryIDChain>
<sequence>ACPNQDPLQGT</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 2647 CA ALA B 139 24.040 25.296 17.408 1.00 12.13 C </line>
<line>ATOM 2652 CA CYS B 140 24.262 28.252 19.794 1.00 15.86 C </line>
<line>ATOM 2658 CA PRO B 141 25.460 31.793 18.956 1.00 7.03 C </line>
<line>ATOM 2665 CA ASN B 142 28.248 33.510 20.923 1.00 15.56 C </line>
<line>ATOM 2673 CA GLN B 143 28.089 32.242 24.525 1.00 15.91 C </line>
<line>ATOM 2682 CA ASP B 144 24.343 31.505 24.498 1.00 15.87 C </line>
<line>ATOM 2690 CA PRO B 145 23.948 28.307 26.585 1.00 14.39 C </line>
<line>ATOM 2697 CA LEU B 146 22.213 25.191 25.265 1.00 13.06 C </line>
<line>ATOM 2705 CA GLN B 147 19.784 24.538 28.143 1.00 19.80 C </line>
<line>ATOM 2714 CA GLY B 148 19.165 28.188 28.984 1.00 17.11 C </line>
<line>ATOM 2718 CA THR B 149 18.129 29.195 25.450 1.00 21.12 C </line>
</atom-coordinate>
<distance-map>
<line> THR GLY GLN LEU PRO ASP GLN ASN PRO CYS ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.72 12.89 11.57 8.07 9.66 9.43 10.74 9.88 6.83 3.81 </line>
<line>CYS CA 8.40 10.51 10.18 6.60 6.80 5.72 7.28 6.69 3.83 </line>
<line>PRO CA 10.13 12.38 13.01 9.69 8.52 5.66 6.17 3.82 </line>
<line>ASN CA 11.90 13.26 14.29 11.16 8.81 5.66 3.82 </line>
<line>GLN CA 10.46 10.77 11.89 9.21 6.07 3.82 </line>
<line>ASP CA 6.70 7.61 9.09 6.71 3.84 </line>
<line>PRO CA 5.99 5.35 5.83 3.80 </line>
<line>LEU CA 5.72 5.67 3.82 </line>
<line>GLN CA 5.63 3.80 </line>
<line>GLY CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ALA CA 364</line>
<line>CYS CA 380</line>
<line>PRO CA 316</line>
<line>ASN CA 349</line>
<line>GLN CA 426</line>
<line>ASP CA 356</line>
<line>PRO CA 391</line>
<line>LEU CA 378</line>
<line>GLN CA 322</line>
<line>GLY CA 264</line>
<line>THR CA 246</line>
</n14>
</entryChain>
<parallel>
<x>50.03900146484375</x>
<y>18.90399932861328</y>
<z>19.100000381469727</z>
</parallel>
<rotation>
<x>-0.8579999804496765</x>
<y>-0.34700000286102295</y>
<z>-0.3799999952316284</z>
<x>0.5130000114440918</x>
<y>-0.5320000052452087</y>
<z>-0.6729999780654907</z>
<x>0.03200000151991844</x>
<y>-0.7720000147819519</y>
<z>0.6340000033378601</z>
</rotation>
<rmsd>2.6908929347991943</rmsd>
<dmax>4.499258995056152</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2GDS</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2GDSB</entryIDChain>
<sequence>TNLSP--NGGGE</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 2192 CA THR B 79 34.449 17.866 31.263 1.00 26.36 C </line>
<line>ATOM 2199 CA ASN B 80 33.798 16.809 27.653 1.00 24.87 C </line>
<line>ATOM 2207 CA LEU B 81 37.494 16.383 26.852 1.00 28.30 C </line>
<line>ATOM 2215 CA SER B 82 40.040 13.957 28.285 1.00 32.86 C </line>
<line>ATOM 2221 CA PRO B 83 43.632 12.764 27.737 1.00 38.29 C </line>
<line>ATOM 2228 CA ASN B 84 42.159 9.239 27.970 1.00 42.68 C </line>
<line>ATOM 2236 CA GLY B 85 39.419 10.148 25.481 1.00 41.01 C </line>
<line>ATOM 2240 CA GLY B 86 38.511 9.465 21.871 1.00 37.46 C </line>
<line>ATOM 2244 CA GLY B 87 36.982 6.377 20.330 1.00 32.58 C </line>
<line>ATOM 2248 CA GLU B 88 33.250 5.682 20.526 1.00 33.61 C </line>
</atom-coordinate>
<distance-map>
<line> GLU GLY GLY GLY ASN PRO SER LEU ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 16.28 16.06 13.24 10.85 12.03 11.08 7.44 5.56 3.82 </line>
<line>ASN CA 13.23 13.14 10.47 8.98 11.28 10.63 6.89 3.81 </line>
<line>LEU CA 13.14 11.95 8.59 6.67 8.61 7.18 3.80 </line>
<line>SER CA 13.22 11.41 7.98 4.77 5.18 3.82 </line>
<line>PRO CA 14.49 11.83 8.46 5.45 3.83 </line>
<line>ASN CA 12.14 9.66 7.11 3.81 </line>
<line>GLY CA 9.09 6.83 3.78 </line>
<line>GLY CA 6.62 3.77 </line>
<line>GLY CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>THR CA 409</line>
<line>ASN CA 469</line>
<line>LEU CA 475</line>
<line>SER CA 353</line>
<line>PRO CA 273</line>
<line>ASN CA 236</line>
<line>GLY CA 309</line>
<line>GLY CA 320</line>
<line>GLY CA 264</line>
<line>GLU CA 302</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B06</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B06A</entryIDChain>
<sequence>NNMAPAGKGGGK</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 710 CA ASN A 89 55.119 46.333 38.461 1.00 13.84 C </line>
<line>ATOM 718 CA ASN A 90 56.753 49.753 38.737 1.00 11.90 C </line>
<line>ATOM 726 CA MET A 91 55.622 50.528 35.178 1.00 16.83 C </line>
<line>ATOM 734 CA ALA A 92 52.150 50.792 33.623 1.00 18.45 C </line>
<line>ATOM 739 CA PRO A 93 50.649 51.149 30.118 1.00 32.38 C </line>
<line>ATOM 746 CA ALA A 94 50.873 54.615 28.536 1.00 57.71 C </line>
<line>ATOM 751 CA GLY A 95 47.571 55.871 29.913 1.00 63.15 C </line>
<line>ATOM 755 CA LYS A 96 47.673 54.298 33.375 1.00 62.49 C </line>
<line>ATOM 764 CA GLY A 97 51.348 55.073 33.873 1.00 41.31 C </line>
<line>ATOM 768 CA GLY A 98 53.254 58.328 33.715 1.00 30.19 C </line>
<line>ATOM 772 CA GLY A 99 52.203 61.692 35.053 1.00 30.09 C </line>
<line>ATOM 776 CA LYS A 100 53.046 63.073 38.475 1.00 30.11 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLY GLY GLY LYS GLY ALA PRO ALA MET ASN ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.87 16.00 13.03 10.57 12.03 14.87 13.61 10.62 7.22 5.35 3.80 </line>
<line>ASN CA 13.83 13.30 10.54 9.01 11.48 14.13 12.74 10.65 6.96 3.81 </line>
<line>MET CA 13.22 11.68 8.28 6.37 8.98 11.00 9.13 7.12 3.81 </line>
<line>ALA CA 13.24 10.99 7.62 4.36 5.69 7.78 6.49 3.83 </line>
<line>PRO CA 14.76 11.74 8.44 5.48 5.42 5.64 3.82 </line>
<line>ALA CA 13.23 9.71 6.80 5.38 5.81 3.79 </line>
<line>GLY CA 12.46 9.04 7.27 5.53 3.80 </line>
<line>LYS CA 11.48 8.83 6.89 3.79 </line>
<line>GLY CA 9.38 6.78 3.78 </line>
<line>GLY CA 6.72 3.77 </line>
<line>GLY CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ASN CA 411</line>
<line>ASN CA 463</line>
<line>MET CA 470</line>
<line>ALA CA 367</line>
<line>PRO CA 296</line>
<line>ALA CA 256</line>
<line>GLY CA 188</line>
<line>LYS CA 225</line>
<line>GLY CA 319</line>
<line>GLY CA 323</line>
<line>GLY CA 268</line>
<line>LYS CA 300</line>
</n14>
</entryChain>
<parallel>
<x>-14.133000373840332</x>
<y>-38.702999114990234</y>
<z>-7.495999813079834</z>
</parallel>
<rotation>
<x>-0.382999986410141</x>
<y>0.7059999704360962</y>
<z>-0.5960000157356262</z>
<x>-0.09600000083446503</x>
<y>-0.671999990940094</y>
<z>-0.734000027179718</z>
<x>-0.9190000295639038</x>
<y>-0.2240000069141388</y>
<z>0.32499998807907104</z>
</rotation>
<rmsd>0.4957210123538971</rmsd>
<dmax>0.9791949987411499</dmax>
</indel>