NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B06D-1UNFX
confEVID 1B06D-1UNFX
pdbIDA 1B06
pdbIDB 1UNF
pdbChainA D
pdbChainB X
identity 0.254400014877319
indelSize 3
alignment <alignment>
<seq1>VIQLKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLL------DRLEKLIKGDLPQGQYDLQGILR-------GLTFNINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSESANSLPGSGWTVLYYDNES------GNLQIMTVENHFMNH-IAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNV-VNWDDAEKRLQKYLNK--</seq1>
<seq2>-KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVTELDGKSLEEIIV--------------TAYNKGDILPAFNNAAQVWNHDFFWECMKP--GGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYKASKLDADEDNKLVVIKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALSA</seq2>
<ss_1> HHHHHHIIIIHHHHHHHHHHHHH------HHHHHHH HHHHHH-------HHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHH EEEEEE ------ EEEEEE - EEE HHHH HHHHHHHGGGG-EEHHHHHHHHH --</ss_1>
<ss_2>- HHHHHHIIIIHHHHHHHHHHHH HHHHHH--------------HH GGG HHHHHHHHHHHHHHH -- HHHHHHHHHHH HHHHHHHHHHHHHH EEEEEEEEEEGGG EEEEEEE EEE EEE HHHH HHHHHHHHHH EEHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B06</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B06D</entryIDChain>
<sequence>HFMNH-IAELP</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 6294 CA HIS D 155 54.042 6.655 4.538 1.00 11.25 C </line>
<line>ATOM 6304 CA PHE D 156 52.620 8.108 7.751 1.00 10.44 C </line>
<line>ATOM 6315 CA MET D 157 55.258 9.027 10.326 1.00 11.44 C </line>
<line>ATOM 6323 CA ASN D 158 56.766 12.517 10.822 1.00 10.64 C </line>
<line>ATOM 6331 CA HIS D 159 54.415 14.580 8.657 1.00 11.49 C </line>
<line>ATOM 6341 CA ILE D 160 53.826 18.130 9.869 1.00 10.34 C </line>
<line>ATOM 6349 CA ALA D 161 50.044 18.575 10.165 1.00 14.59 C </line>
<line>ATOM 6354 CA GLU D 162 48.242 20.486 7.389 1.00 13.83 C </line>
<line>ATOM 6363 CA LEU D 163 51.366 21.635 5.528 1.00 11.11 C </line>
<line>ATOM 6371 CA PRO D 164 51.390 21.263 1.713 1.00 13.95 C </line>
</atom-coordinate>
<distance-map>
<line> PRO LEU GLU ALA ILE HIS ASN MET PHE HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 15.11 15.25 15.27 13.77 12.65 8.94 9.02 6.37 3.80 </line>
<line>PHE CA 14.53 13.77 13.13 11.05 10.31 6.78 6.79 3.80 </line>
<line>MET CA 15.46 14.04 13.75 10.88 9.23 5.86 3.83 </line>
<line>ASN CA 13.72 11.85 12.16 9.07 6.41 3.80 </line>
<line>HIS CA 10.10 8.30 8.64 6.11 3.80 </line>
<line>ILE CA 9.07 6.10 6.55 3.82 </line>
<line>ALA CA 8.97 5.71 3.82 </line>
<line>GLU CA 6.54 3.81 </line>
<line>LEU CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>HIS CA 415</line>
<line>PHE CA 338</line>
<line>MET CA 279</line>
<line>ASN CA 273</line>
<line>HIS CA 310</line>
<line>ILE CA 266</line>
<line>ALA CA 208</line>
<line>GLU CA 221</line>
<line>LEU CA 300</line>
<line>PRO CA 362</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UNF</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>1UNFX</entryIDChain>
<sequence>AVNPLVWGGYY</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1230 CA ALA X 179 -30.295 43.150 46.526 1.00 14.43 C </line>
<line>ATOM 1235 CA VAL X 180 -27.930 46.119 46.304 1.00 13.98 C </line>
<line>ATOM 1242 CA ASN X 181 -24.968 45.775 43.942 1.00 16.00 C </line>
<line>ATOM 1250 CA PRO X 182 -22.121 48.030 42.868 1.00 20.09 C </line>
<line>ATOM 1257 CA LEU X 183 -23.965 48.929 39.642 1.00 24.72 C </line>
<line>ATOM 1265 CA VAL X 184 -26.108 51.376 41.587 1.00 25.46 C </line>
<line>ATOM 1272 CA TRP X 185 -23.210 53.455 42.917 1.00 35.23 C </line>
<line>ATOM 1286 CA GLY X 186 -21.513 53.732 40.322 1.00 32.56 C </line>
<line>ATOM 1290 CA GLY X 187 -17.970 54.182 39.155 1.00 23.50 C </line>
<line>ATOM 1294 CA TYR X 188 -17.648 50.544 40.303 1.00 21.14 C </line>
<line>ATOM 1306 CA TYR X 189 -17.261 47.480 38.132 1.00 17.99 C </line>
</atom-coordinate>
<distance-map>
<line> TYR TYR GLY GLY TRP VAL LEU PRO ASN VAL ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 16.10 15.92 18.11 15.09 13.02 10.47 10.99 10.20 6.48 3.80 </line>
<line>VAL CA 13.51 12.70 14.67 11.62 9.36 7.29 8.25 7.01 3.80 </line>
<line>ASN CA 9.80 9.46 11.94 9.40 7.95 6.18 5.43 3.79 </line>
<line>PRO CA 6.81 5.74 8.30 6.27 5.53 5.36 3.82 </line>
<line>LEU CA 7.02 6.55 7.99 5.44 5.64 3.79 </line>
<line>VAL CA 10.27 8.60 8.95 5.32 3.81 </line>
<line>TRP CA 9.69 6.80 6.49 3.11 </line>
<line>GLY CA 7.87 5.01 3.76 </line>
<line>GLY CA 6.82 3.83 </line>
<line>TYR CA 3.78 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 474</line>
<line>VAL CA 453</line>
<line>ASN CA 497</line>
<line>PRO CA 452</line>
<line>LEU CA 448</line>
<line>VAL CA 384</line>
<line>TRP CA 316</line>
<line>GLY CA 327</line>
<line>GLY CA 304</line>
<line>TYR CA 396</line>
<line>TYR CA 434</line>
</n14>
</entryChain>
<parallel>
<x>77.14800262451172</x>
<y>-35.6619987487793</y>
<z>-34.02000045776367</z>
</parallel>
<rotation>
<x>0.10899999737739563</x>
<y>0.48500001430511475</y>
<z>0.8679999709129333</z>
<x>-0.828000009059906</x>
<y>0.5270000100135803</y>
<z>-0.19099999964237213</z>
<x>-0.550000011920929</x>
<y>-0.6980000138282776</y>
<z>0.45899999141693115</z>
</rotation>
<rmsd>3.1296169757843018</rmsd>
<dmax>5.294285774230957</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1B06</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B06D</entryIDChain>
<sequence>AWWNV-VNWDD</sequence>
<secondary-structure>HGGGG-EEHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6598 CA ALA D 190 69.723 10.612 -10.620 1.00 16.51 C </line>
<line>ATOM 6603 CA TRP D 191 66.336 11.806 -9.356 1.00 15.59 C </line>
<line>ATOM 6617 CA TRP D 192 67.405 15.481 -9.474 1.00 21.54 C </line>
<line>ATOM 6631 CA ASN D 193 67.450 15.177 -13.272 1.00 19.93 C </line>
<line>ATOM 6639 CA VAL D 194 63.711 14.449 -13.540 1.00 15.99 C </line>
<line>ATOM 6646 CA VAL D 195 62.362 16.826 -10.898 1.00 14.02 C </line>
<line>ATOM 6653 CA ASN D 196 59.411 18.848 -12.202 1.00 17.88 C </line>
<line>ATOM 6661 CA TRP D 197 60.112 22.348 -10.907 1.00 16.77 C </line>
<line>ATOM 6675 CA ASP D 198 57.082 23.731 -12.752 1.00 25.33 C </line>
<line>ATOM 6683 CA ASP D 199 54.842 21.451 -10.708 1.00 18.54 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ASP TRP ASN VAL VAL ASN TRP TRP ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 18.41 18.34 15.17 13.29 9.64 7.71 5.75 5.51 3.81 </line>
<line>TRP CA 15.07 15.47 12.34 10.28 6.59 5.60 5.29 3.83 </line>
<line>TRP CA 13.96 13.62 10.12 9.09 5.41 5.59 3.81 </line>
<line>ASN CA 14.31 13.45 10.53 8.90 5.85 3.82 </line>
<line>VAL CA 11.65 11.43 9.07 6.30 3.80 </line>
<line>VAL CA 8.83 8.89 5.96 3.81 </line>
<line>ASN CA 5.47 5.44 3.80 </line>
<line>TRP CA 5.35 3.81 </line>
<line>ASP CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ALA CA 353</line>
<line>TRP CA 472</line>
<line>TRP CA 438</line>
<line>ASN CA 336</line>
<line>VAL CA 407</line>
<line>VAL CA 466</line>
<line>ASN CA 400</line>
<line>TRP CA 387</line>
<line>ASP CA 305</line>
<line>ASP CA 353</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1UNF</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>1UNFX</entryIDChain>
<sequence>VFMDKLVSWDA</sequence>
<secondary-structure>HHHH EEHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1540 CA VAL X 215 -14.909 27.036 51.212 1.00 17.49 C </line>
<line>ATOM 1547 CA PHE X 216 -16.268 29.339 48.506 1.00 15.04 C </line>
<line>ATOM 1558 CA MET X 217 -12.868 30.958 48.200 1.00 14.94 C </line>
<line>ATOM 1566 CA ASP X 218 -10.887 27.728 48.634 1.00 16.85 C </line>
<line>ATOM 1574 CA LYS X 219 -12.870 25.528 46.245 1.00 17.80 C </line>
<line>ATOM 1583 CA LEU X 220 -15.500 27.385 44.197 1.00 17.00 C </line>
<line>ATOM 1591 CA VAL X 221 -14.281 30.783 42.978 1.00 15.88 C </line>
<line>ATOM 1598 CA SER X 222 -13.480 31.028 39.279 1.00 17.21 C </line>
<line>ATOM 1604 CA TRP X 223 -10.506 33.343 39.005 1.00 17.98 C </line>
<line>ATOM 1618 CA ASP X 224 -10.806 33.052 35.208 1.00 18.69 C </line>
<line>ATOM 1626 CA ALA X 225 -14.212 34.695 35.498 1.00 15.47 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASP TRP SER VAL LEU LYS ASP MET PHE VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 17.50 17.58 14.43 12.66 9.07 7.05 5.58 4.83 5.35 3.80 </line>
<line>PHE CA 14.22 14.85 11.81 9.79 6.05 4.79 5.58 5.62 3.78 </line>
<line>MET CA 13.31 13.32 9.79 8.94 5.41 5.98 5.77 3.81 </line>
<line>ASP CA 15.24 14.44 11.15 10.25 7.27 6.41 3.81 </line>
<line>LYS CA 14.19 13.52 10.91 8.90 6.35 3.82 </line>
<line>LEU CA 11.44 11.62 9.35 6.45 3.81 </line>
<line>VAL CA 8.44 8.81 6.05 3.79 </line>
<line>SER CA 5.32 5.27 3.78 </line>
<line>TRP CA 5.28 3.82 </line>
<line>ASP CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>VAL CA 359</line>
<line>PHE CA 484</line>
<line>MET CA 434</line>
<line>ASP CA 319</line>
<line>LYS CA 312</line>
<line>LEU CA 414</line>
<line>VAL CA 456</line>
<line>SER CA 384</line>
<line>TRP CA 389</line>
<line>ASP CA 304</line>
<line>ALA CA 373</line>
</n14>
</entryChain>
<parallel>
<x>77.8219985961914</x>
<y>-13.77400016784668</y>
<z>-56.79100036621094</z>
</parallel>
<rotation>
<x>0.4480000138282776</x>
<y>0.7049999833106995</y>
<z>-0.550000011920929</z>
<x>0.05700000002980232</x>
<y>0.5910000205039978</y>
<z>0.8040000200271606</z>
<x>0.8920000195503235</x>
<y>-0.39100000262260437</y>
<z>0.22499999403953552</z>
</rotation>
<rmsd>1.0370450019836426</rmsd>
<dmax>2.065596103668213</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1UNF</pdbID>
<pdbChain>X</pdbChain>
<entryIDChain>1UNFX</entryIDChain>
<sequence>ECMKP--GGGGK</sequence>
<secondary-structure>H -- </secondary-structure>
<atom-coordinate>
<line>ATOM 694 CA GLU X 100 -20.497 32.916 36.776 1.00 18.38 C </line>
<line>ATOM 703 CA CYS X 101 -18.262 33.452 39.821 1.00 14.26 C </line>
<line>ATOM 709 CA MET X 102 -17.809 29.777 40.475 1.00 14.02 C </line>
<line>ATOM 717 CA LYS X 103 -16.605 26.689 38.657 1.00 18.17 C </line>
<line>ATOM 726 CA PRO X 104 -16.081 22.975 39.260 1.00 18.81 C </line>
<line>ATOM 733 CA GLY X 105 -12.475 22.712 40.528 1.00 18.60 C </line>
<line>ATOM 737 CA GLY X 106 -12.304 26.399 41.369 1.00 17.61 C </line>
<line>ATOM 741 CA GLY X 107 -10.475 27.945 44.233 1.00 17.12 C </line>
<line>ATOM 745 CA GLY X 108 -6.747 28.571 44.478 1.00 17.94 C </line>
<line>ATOM 749 CA LYS X 109 -5.200 31.906 43.596 1.00 19.65 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLY GLY GLY GLY PRO LYS MET CYS GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 16.78 16.35 13.44 11.43 13.51 11.16 7.58 5.55 3.82 </line>
<line>CYS CA 13.68 13.35 10.51 9.36 12.22 10.72 7.06 3.76 </line>
<line>MET CA 13.16 11.83 8.44 6.52 8.85 7.12 3.78 </line>
<line>LYS CA 13.48 11.60 8.38 5.09 6.03 3.80 </line>
<line>PRO CA 14.73 12.07 8.99 5.52 3.83 </line>
<line>GLY CA 12.12 9.10 6.72 3.79 </line>
<line>GLY CA 9.26 6.73 3.73 </line>
<line>GLY CA 6.63 3.79 </line>
<line>GLY CA 3.78 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>GLU CA 433</line>
<line>CYS CA 498</line>
<line>MET CA 465</line>
<line>LYS CA 351</line>
<line>PRO CA 275</line>
<line>GLY CA 235</line>
<line>GLY CA 307</line>
<line>GLY CA 334</line>
<line>GLY CA 264</line>
<line>LYS CA 309</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B06</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B06D</entryIDChain>
<sequence>NNMAPAGKGGGK</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 5801 CA ASN D 89 53.360 14.825 -10.978 1.00 19.40 C </line>
<line>ATOM 5809 CA ASN D 90 56.492 16.068 -9.192 1.00 11.41 C </line>
<line>ATOM 5817 CA MET D 91 58.638 14.482 -11.910 1.00 17.22 C </line>
<line>ATOM 5825 CA ALA D 92 58.889 15.113 -15.665 1.00 18.92 C </line>
<line>ATOM 5830 CA PRO D 93 60.569 13.508 -18.694 1.00 32.46 C </line>
<line>ATOM 5837 CA ALA D 94 64.317 14.121 -19.016 1.00 62.78 C </line>
<line>ATOM 5842 CA GLY D 95 63.933 17.269 -21.105 1.00 66.42 C </line>
<line>ATOM 5846 CA LYS D 96 60.943 18.884 -19.362 1.00 61.32 C </line>
<line>ATOM 5855 CA GLY D 97 62.134 17.930 -15.884 1.00 42.39 C </line>
<line>ATOM 5859 CA GLY D 98 65.373 18.711 -14.100 1.00 31.59 C </line>
<line>ATOM 5863 CA GLY D 99 67.314 21.948 -14.083 1.00 28.15 C </line>
<line>ATOM 5867 CA LYS D 100 66.936 24.702 -11.518 1.00 27.95 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLY GLY GLY LYS GLY ALA PRO ALA MET ASN ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.80 15.97 13.01 10.52 12.01 14.84 13.61 10.64 7.25 5.37 3.81 </line>
<line>ASN CA 13.75 13.25 10.49 8.95 11.45 14.10 12.71 10.65 6.97 3.81 </line>
<line>MET CA 13.17 11.65 8.25 6.32 8.96 10.97 9.10 7.12 3.82 </line>
<line>ALA CA 13.19 10.96 7.58 4.30 5.67 7.73 6.46 3.82 </line>
<line>PRO CA 14.74 11.75 8.44 5.47 5.43 5.59 3.81 </line>
<line>ALA CA 13.23 9.73 6.81 5.39 5.85 3.80 </line>
<line>GLY CA 12.50 9.09 7.30 5.56 3.82 </line>
<line>LYS CA 11.46 8.82 6.88 3.80 </line>
<line>GLY CA 9.38 6.80 3.78 </line>
<line>GLY CA 6.71 3.77 </line>
<line>GLY CA 3.78 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ASN CA 411</line>
<line>ASN CA 462</line>
<line>MET CA 471</line>
<line>ALA CA 365</line>
<line>PRO CA 295</line>
<line>ALA CA 254</line>
<line>GLY CA 188</line>
<line>LYS CA 223</line>
<line>GLY CA 321</line>
<line>GLY CA 324</line>
<line>GLY CA 267</line>
<line>LYS CA 302</line>
</n14>
</entryChain>
<parallel>
<x>-75.11299896240234</x>
<y>11.668000221252441</y>
<z>54.612998962402344</z>
</parallel>
<rotation>
<x>0.4050000011920929</x>
<y>-0.2720000147819519</y>
<z>0.8730000257492065</z>
<x>0.8939999938011169</x>
<y>0.3160000145435333</y>
<z>-0.3160000145435333</z>
<x>-0.1899999976158142</x>
<y>0.9089999794960022</y>
<z>0.3709999918937683</z>
</rotation>
<rmsd>1.0999319553375244</rmsd>
<dmax>2.3294830322265625</dmax>
</indel>