NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B06E-2CDYD
confEVID 1B06E-2CDYD
pdbIDA 1B06
pdbIDB 2CDY
pdbChainA E
pdbChainB D
identity 0.369700014591217
indelSize 2
alignment <alignment>
<seq1>VIQLKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYDLQGI----LRGLTFNINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVENH------FMNHIAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNVVNWDDAEKRLQKYLNK</seq1>
<seq2>-----AYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQ-LDRVPADKKGALRNNAGGHANHSMFWQIMGQ--GQANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKD--GKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK--</seq2>
<ss_1> HHHHHHIIIIHHHHHHHHHHHHHHHHHHHH HHHH----HHHHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHH EEEEEE EEEEEE ------ EEE HHHH HHHHHHHGGGGEEHHHHHHHHH </ss_1>
<ss_2>----- HHHHHHIIIIHHHHHHHHHHHHH GGG -HHHH HHHHHHHHHHHHHHHHHHH -- HHHHHHHHHHH HHHHHHHHHHHHHH EEEEEEEE -- EEEEEEE HHHH EEE HHHH HHHHHHHH EEHHHHHHHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2CDY</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2CDYD</entryIDChain>
<sequence>QIMGQ--GQANQ</sequence>
<secondary-structure>H -- </secondary-structure>
<atom-coordinate>
<line>ATOM 5535 CA GLN D 85 -0.648 45.247 9.705 1.00 18.77 C </line>
<line>ATOM 5544 CA ILE D 86 0.259 41.631 8.855 1.00 17.50 C </line>
<line>ATOM 5552 CA MET D 87 -2.608 40.243 10.989 1.00 20.26 C </line>
<line>ATOM 5560 CA GLY D 88 -6.351 40.404 10.121 1.00 26.95 C </line>
<line>ATOM 5564 CA GLN D 89 -9.823 39.009 10.941 1.00 34.95 C </line>
<line>ATOM 5573 CA GLY D 90 -11.648 36.484 8.747 1.00 39.11 C </line>
<line>ATOM 5577 CA GLN D 91 -8.542 35.291 6.878 1.00 41.06 C </line>
<line>ATOM 5586 CA ALA D 96 -7.627 27.451 5.272 1.00 30.84 C </line>
<line>ATOM 5591 CA ASN D 97 -5.480 30.610 5.420 1.00 27.51 C </line>
<line>ATOM 5599 CA GLN D 98 -2.538 30.593 2.992 1.00 26.35 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ASN ALA GLN GLY GLN GLY MET ILE GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 16.23 16.00 19.62 13.02 14.10 11.16 7.49 5.53 3.82 </line>
<line>ILE CA 12.81 12.89 16.62 11.03 12.97 10.62 6.84 3.83 </line>
<line>MET CA 12.53 11.49 14.88 8.75 10.04 7.32 3.85 </line>
<line>GLY CA 12.71 10.90 13.89 6.44 6.73 3.83 </line>
<line>GLN CA 13.68 10.95 13.06 5.65 3.81 </line>
<line>GLY CA 12.28 9.14 10.48 3.82 </line>
<line>GLN CA 8.56 5.78 8.05 </line>
<line>ALA CA 6.40 3.82 </line>
<line>ASN CA 3.81 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>GLN CA 401</line>
<line>ILE CA 459</line>
<line>MET CA 477</line>
<line>GLY CA 365</line>
<line>GLN CA 278</line>
<line>GLY CA 214</line>
<line>GLN CA 260</line>
<line>ALA CA 174</line>
<line>ASN CA 273</line>
<line>GLN CA 325</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B06</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1B06E</entryIDChain>
<sequence>NNMAPAGKGGGK</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 7498 CA ASN E 89 61.500 -4.423 41.409 1.00 17.07 C </line>
<line>ATOM 7506 CA ASN E 90 64.132 -2.016 40.075 1.00 13.25 C </line>
<line>ATOM 7514 CA MET E 91 63.280 0.404 42.892 1.00 18.20 C </line>
<line>ATOM 7522 CA ALA E 92 63.511 0.088 46.681 1.00 21.43 C </line>
<line>ATOM 7527 CA PRO E 93 62.389 2.059 49.747 1.00 31.22 C </line>
<line>ATOM 7534 CA ALA E 94 64.475 5.138 50.600 1.00 58.36 C </line>
<line>ATOM 7539 CA GLY E 95 66.958 3.328 52.831 1.00 62.13 C </line>
<line>ATOM 7543 CA LYS E 96 67.330 0.068 50.922 1.00 61.89 C </line>
<line>ATOM 7552 CA GLY E 97 67.359 1.834 47.568 1.00 43.72 C </line>
<line>ATOM 7556 CA GLY E 98 69.590 4.561 46.198 1.00 35.88 C </line>
<line>ATOM 7560 CA GLY E 99 73.309 4.921 46.656 1.00 32.09 C </line>
<line>ATOM 7564 CA LYS E 100 75.942 3.640 44.266 1.00 34.31 C </line>
</atom-coordinate>
<distance-map>
<line> LYS GLY GLY GLY LYS GLY ALA PRO ALA MET ASN ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.79 15.95 13.00 10.56 12.03 14.84 13.59 10.60 7.22 5.35 3.81 </line>
<line>ASN CA 13.75 13.25 10.51 9.02 11.50 14.12 12.73 10.64 6.96 3.81 </line>
<line>MET CA 13.14 11.63 8.25 6.37 9.00 10.99 9.12 7.11 3.81 </line>
<line>ALA CA 13.15 10.93 7.56 4.32 5.71 7.76 6.46 3.81 </line>
<line>PRO CA 14.70 11.70 8.41 5.43 5.46 5.66 3.82 </line>
<line>ALA CA 13.19 9.68 6.77 5.33 5.83 3.80 </line>
<line>GLY CA 12.42 9.00 7.24 5.49 3.80 </line>
<line>LYS CA 11.46 8.80 6.90 3.79 </line>
<line>GLY CA 9.37 6.76 3.78 </line>
<line>GLY CA 6.70 3.76 </line>
<line>GLY CA 3.78 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ASN CA 411</line>
<line>ASN CA 463</line>
<line>MET CA 471</line>
<line>ALA CA 367</line>
<line>PRO CA 298</line>
<line>ALA CA 257</line>
<line>GLY CA 191</line>
<line>LYS CA 226</line>
<line>GLY CA 319</line>
<line>GLY CA 326</line>
<line>GLY CA 268</line>
<line>LYS CA 304</line>
</n14>
</entryChain>
<parallel>
<x>-70.76000213623047</x>
<y>37.89799880981445</y>
<z>-36.74800109863281</z>
</parallel>
<rotation>
<x>-0.029999999329447746</x>
<y>-0.5149999856948853</y>
<z>-0.8560000061988831</z>
<x>0.014999999664723873</x>
<y>-0.8569999933242798</y>
<z>0.5149999856948853</z>
<x>-0.9990000128746033</x>
<y>0.0020000000949949026</y>
<z>0.03400000184774399</z>
</rotation>
<rmsd>2.325611114501953</rmsd>
<dmax>5.192000865936279</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2CDY</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2CDYD</entryIDChain>
<sequence>LVVKD--GKLDV</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5896 CA LEU D 136 10.194 35.852 6.892 1.00 15.72 C </line>
<line>ATOM 5904 CA VAL D 137 12.615 38.087 4.987 1.00 18.73 C </line>
<line>ATOM 5911 CA VAL D 138 13.562 38.837 1.378 1.00 23.48 C </line>
<line>ATOM 5918 CA LYS D 139 17.323 39.187 0.742 1.00 28.26 C </line>
<line>ATOM 5924 CA ASP D 140 18.397 39.835 -2.895 1.00 32.18 C </line>
<line>ATOM 5932 CA GLY D 141 15.073 38.431 -4.114 1.00 30.86 C </line>
<line>ATOM 5936 CA LYS D 142 15.447 35.183 -2.133 1.00 29.41 C </line>
<line>ATOM 5945 CA LEU D 143 13.174 34.262 0.822 1.00 25.94 C </line>
<line>ATOM 5953 CA ASP D 144 14.576 33.011 4.149 1.00 23.22 C </line>
<line>ATOM 5961 CA VAL D 145 13.549 32.612 7.786 1.00 19.51 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASP LEU LYS GLY ASP LYS VAL VAL LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 4.75 5.90 6.95 10.46 12.31 13.38 9.99 7.12 3.81 </line>
<line>VAL CA 6.22 5.51 5.68 8.19 9.43 9.93 6.43 3.81 </line>
<line>VAL CA 8.93 6.53 4.62 5.41 5.71 6.53 3.83 </line>
<line>LYS CA 10.35 7.57 6.44 5.27 5.41 3.85 </line>
<line>ASP CA 13.78 10.53 8.49 5.56 3.81 </line>
<line>GLY CA 13.33 9.89 6.73 3.82 </line>
<line>LYS CA 10.42 6.70 3.84 </line>
<line>LEU CA 7.17 3.82 </line>
<line>ASP CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 528</line>
<line>VAL CA 439</line>
<line>VAL CA 336</line>
<line>LYS CA 252</line>
<line>ASP CA 172</line>
<line>GLY CA 211</line>
<line>LYS CA 243</line>
<line>LEU CA 363</line>
<line>ASP CA 367</line>
<line>VAL CA 415</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B06</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1B06E</entryIDChain>
<sequence>LYYDNESGNLQI</sequence>
<secondary-structure>E EE</secondary-structure>
<atom-coordinate>
<line>ATOM 7852 CA LEU E 138 70.053 0.137 30.273 1.00 14.72 C </line>
<line>ATOM 7860 CA TYR E 139 70.503 -3.186 28.480 1.00 15.12 C </line>
<line>ATOM 7872 CA TYR E 140 73.364 -5.616 28.827 1.00 16.25 C </line>
<line>ATOM 7884 CA ASP E 141 74.619 -6.747 25.417 1.00 16.72 C </line>
<line>ATOM 7892 CA ASN E 142 76.037 -10.258 25.774 1.00 30.69 C </line>
<line>ATOM 7900 CA GLU E 143 77.484 -10.056 22.254 1.00 20.33 C </line>
<line>ATOM 7909 CA SER E 144 79.634 -6.936 22.687 1.00 18.16 C </line>
<line>ATOM 7915 CA GLY E 145 79.601 -6.845 26.478 1.00 14.47 C </line>
<line>ATOM 7919 CA ASN E 146 78.397 -3.243 26.409 1.00 12.75 C </line>
<line>ATOM 7927 CA LEU E 147 75.906 -1.711 28.823 1.00 18.31 C </line>
<line>ATOM 7935 CA GLN E 148 73.726 -0.022 26.193 1.00 14.81 C </line>
<line>ATOM 7944 CA ILE E 149 71.567 2.980 27.059 1.00 12.95 C </line>
</atom-coordinate>
<distance-map>
<line> ILE GLN LEU ASN GLY SER GLU ASN ASP TYR TYR LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 4.55 5.49 6.31 9.80 12.42 14.12 14.95 12.81 9.58 6.79 3.80 </line>
<line>TYR CA 6.42 5.06 5.61 8.16 10.01 11.45 11.61 9.38 6.25 3.77 </line>
<line>TYR CA 8.96 6.19 4.66 6.07 6.78 8.87 8.94 6.17 3.81 </line>
<line>ASP CA 10.33 6.83 6.21 5.25 5.09 5.71 5.40 3.80 </line>
<line>ASN CA 14.03 10.50 9.08 7.43 4.98 5.79 3.81 </line>
<line>GLU CA 15.10 11.42 10.74 8.03 5.71 3.81 </line>
<line>SER CA 13.51 9.75 8.88 5.39 3.79 </line>
<line>GLY CA 12.70 9.01 6.75 3.80 </line>
<line>ASN CA 9.26 5.68 3.79 </line>
<line>LEU CA 6.63 3.81 </line>
<line>GLN CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LEU CA 512</line>
<line>TYR CA 431</line>
<line>TYR CA 388</line>
<line>ASP CA 288</line>
<line>ASN CA 233</line>
<line>GLU CA 174</line>
<line>SER CA 188</line>
<line>GLY CA 262</line>
<line>ASN CA 293</line>
<line>LEU CA 397</line>
<line>GLN CA 364</line>
<line>ILE CA 410</line>
</n14>
</entryChain>
<parallel>
<x>-60.33700180053711</x>
<y>42.143001556396484</y>
<z>-26.850000381469727</z>
</parallel>
<rotation>
<x>-0.01600000075995922</x>
<y>-0.37599998712539673</y>
<z>-0.9259999990463257</z>
<x>-0.3059999942779541</x>
<y>-0.8799999952316284</y>
<z>0.3619999885559082</z>
<x>-0.9520000219345093</x>
<y>0.289000004529953</y>
<z>-0.10100000351667404</z>
</rotation>
<rmsd>1.0222569704055786</rmsd>
<dmax>1.7620279788970947</dmax>
</indel>