NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BDDA-2HOTB
confEVID 1BDDA-2HOTB
pdbIDA 1BDD
pdbIDB 2HOT
pdbChainA A
pdbChainB B
identity 0.0678000003099442
indelSize 2
alignment <alignment>
<seq1>-TADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQ--SANLLAEAKKLNDAQAPKA</seq1>
<seq2>KRPRTAFSSEQLARLKREFN--ENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKS---</seq2>
<ss_1>- HHHHHHHH HHHHHHHHHHHHH --HHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHH -- HHHHHHHHHH HHHHHHHHHHHHHHHH ---</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BDD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BDDA</entryIDChain>
<sequence>DDPSQ--SANLL</sequence>
<secondary-structure>H --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 596 CA ASP A 37 -7.787 -9.895 2.475 1.00 1.00 C </line>
<line>ATOM 608 CA ASP A 38 -9.182 -7.070 4.582 1.00 1.00 C </line>
<line>ATOM 620 CA PRO A 39 -9.596 -3.784 2.647 1.00 1.00 C </line>
<line>ATOM 634 CA SER A 40 -10.532 -2.044 5.900 1.00 1.00 C </line>
<line>ATOM 645 CA GLN A 41 -7.350 -0.217 6.936 1.00 1.00 C </line>
<line>ATOM 662 CA SER A 42 -5.527 -0.723 3.637 1.00 1.00 C </line>
<line>ATOM 673 CA ALA A 43 -4.719 2.974 3.703 1.00 1.00 C </line>
<line>ATOM 683 CA ASN A 44 -2.954 2.862 7.042 1.00 1.00 C </line>
<line>ATOM 697 CA LEU A 45 -0.654 0.038 5.955 1.00 1.00 C </line>
<line>ATOM 716 CA LEU A 46 0.240 2.128 2.973 1.00 1.00 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU ASN ALA SER GLN SER PRO ASP ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 14.46 12.71 14.39 13.29 9.52 10.67 8.99 6.38 3.79 </line>
<line>ASP CA 13.27 11.19 11.98 11.03 7.38 7.47 5.37 3.84 </line>
<line>PRO CA 11.48 10.27 10.37 8.40 5.19 6.01 3.81 </line>
<line>SER CA 11.92 10.10 9.10 7.99 5.65 3.81 </line>
<line>GLN CA 8.88 6.77 5.37 5.25 3.80 </line>
<line>SER CA 6.47 5.45 5.57 3.78 </line>
<line>ALA CA 5.08 5.50 3.78 </line>
<line>ASN CA 5.22 3.80 </line>
<line>LEU CA 3.75 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASP CA 311</line>
<line>ASP CA 371</line>
<line>PRO CA 501</line>
<line>SER CA 430</line>
<line>GLN CA 496</line>
<line>SER CA 613</line>
<line>ALA CA 594</line>
<line>ASN CA 523</line>
<line>LEU CA 636</line>
<line>LEU CA 690</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2HOT</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2HOTB</entryIDChain>
<sequence>ELGLNEAQVKGW</sequence>
<secondary-structure>H HHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1614 CA GLU B 37 -0.259 16.050 72.716 1.00 39.04 C </line>
<line>ATOM 1623 CA LEU B 38 -2.721 14.391 70.234 1.00 36.77 C </line>
<line>ATOM 1631 CA GLY B 39 -0.510 11.385 69.377 1.00 35.29 C </line>
<line>ATOM 1635 CA LEU B 40 -0.472 12.428 65.727 1.00 36.33 C </line>
<line>ATOM 1643 CA ASN B 41 2.335 12.570 63.164 1.00 36.12 C </line>
<line>ATOM 1651 CA GLU B 42 3.436 16.189 62.580 1.00 36.17 C </line>
<line>ATOM 1660 CA ALA B 43 2.656 15.655 58.858 1.00 36.18 C </line>
<line>ATOM 1665 CA GLN B 44 -0.969 14.706 59.593 1.00 37.48 C </line>
<line>ATOM 1674 CA VAL B 45 -1.350 17.843 61.767 1.00 38.61 C </line>
<line>ATOM 1681 CA LYS B 46 0.113 20.228 59.186 1.00 39.32 C </line>
<line>ATOM 1690 CA GLY B 47 -1.919 18.525 56.494 1.00 36.84 C </line>
<line>ATOM 1694 CA TRP B 48 -5.202 18.961 58.399 1.00 35.19 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLY LYS VAL GLN ALA GLU ASN LEU GLY LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 15.42 16.49 14.17 11.15 13.21 14.17 10.79 10.49 7.87 5.74 3.87 </line>
<line>LEU CA 12.93 14.37 12.81 9.25 10.79 12.65 9.99 8.88 5.41 3.83 </line>
<line>GLY CA 14.14 14.80 13.51 10.02 10.34 11.79 9.21 6.94 3.80 </line>
<line>LEU CA 10.90 11.16 10.20 6.77 6.56 8.21 6.27 3.80 </line>
<line>ASN CA 10.97 9.90 8.91 6.58 5.31 5.31 3.83 </line>
<line>GLU CA 9.99 8.44 6.23 5.13 5.52 3.84 </line>
<line>ALA CA 8.54 5.90 5.24 5.41 3.82 </line>
<line>GLN CA 6.12 5.01 5.64 3.84 </line>
<line>VAL CA 5.24 5.35 3.81 </line>
<line>LYS CA 5.52 3.78 </line>
<line>GLY CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>GLU CA 217</line>
<line>LEU CA 261</line>
<line>GLY CA 212</line>
<line>LEU CA 269</line>
<line>ASN CA 243</line>
<line>GLU CA 280</line>
<line>ALA CA 261</line>
<line>GLN CA 296</line>
<line>VAL CA 383</line>
<line>LYS CA 337</line>
<line>GLY CA 312</line>
<line>TRP CA 364</line>
</n14>
</entryChain>
<parallel>
<x>-6.7270002365112305</x>
<y>-17.187000274658203</y>
<z>-60.60499954223633</z>
</parallel>
<rotation>
<x>-0.004999999888241291</x>
<y>-0.13199999928474426</y>
<z>0.9909999966621399</z>
<x>0.9869999885559082</x>
<y>-0.16099999845027924</y>
<z>-0.01600000075995922</z>
<x>-0.16200000047683716</x>
<y>-0.9779999852180481</y>
<z>-0.13099999725818634</z>
</rotation>
<rmsd>2.65503191947937</rmsd>
<dmax>4.393426895141602</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2HOT</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2HOTB</entryIDChain>
<sequence>KREFN--ENRYL</sequence>
<secondary-structure>HHHH -- </secondary-structure>
<atom-coordinate>
<line>ATOM 1434 CA LYS B 17 -10.512 22.857 65.598 1.00 40.66 C </line>
<line>ATOM 1443 CA ARG B 18 -10.029 24.681 68.885 1.00 39.46 C </line>
<line>ATOM 1454 CA GLU B 19 -6.449 25.544 67.831 1.00 38.95 C </line>
<line>ATOM 1463 CA PHE B 20 -7.565 26.406 64.300 1.00 35.57 C </line>
<line>ATOM 1474 CA ASN B 21 -10.139 28.860 65.790 1.00 34.64 C </line>
<line>ATOM 1482 CA GLU B 22 -7.252 30.827 67.356 1.00 32.50 C </line>
<line>ATOM 1491 CA ASN B 23 -4.781 30.729 64.487 1.00 32.66 C </line>
<line>ATOM 1499 CA ARG B 24 -5.213 29.010 61.079 1.00 35.05 C </line>
<line>ATOM 1510 CA TYR B 25 -1.415 28.681 60.706 1.00 36.93 C </line>
<line>ATOM 1522 CA LEU B 26 0.995 26.550 62.712 1.00 39.74 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TYR ARG ASN GLU ASN PHE GLU ARG LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.42 11.86 9.29 9.80 8.79 6.02 4.79 5.36 3.79 </line>
<line>ARG CA 12.77 12.53 10.14 9.14 6.92 5.20 5.48 3.83 </line>
<line>GLU CA 9.09 9.27 7.69 6.39 5.36 5.36 3.80 </line>
<line>PHE CA 8.71 7.48 4.76 5.15 5.38 3.86 </line>
<line>ASN CA 11.78 10.10 6.82 5.82 3.83 </line>
<line>GLU CA 10.39 9.10 6.85 3.79 </line>
<line>ASN CA 7.35 5.46 3.84 </line>
<line>ARG CA 6.87 3.83 </line>
<line>TYR CA 3.79 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LYS CA 293</line>
<line>ARG CA 237</line>
<line>GLU CA 303</line>
<line>PHE CA 295</line>
<line>ASN CA 210</line>
<line>GLU CA 191</line>
<line>ASN CA 231</line>
<line>ARG CA 262</line>
<line>TYR CA 271</line>
<line>LEU CA 289</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BDD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BDDA</entryIDChain>
<sequence>YEILHLPNLNEE</sequence>
<secondary-structure>HHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 225 CA TYR A 15 -1.446 0.335 -7.222 1.00 1.00 C </line>
<line>ATOM 246 CA GLU A 16 1.576 2.289 -5.964 1.00 1.00 C </line>
<line>ATOM 261 CA ILE A 17 2.937 0.312 -2.977 1.00 1.00 C </line>
<line>ATOM 280 CA LEU A 18 3.001 -2.554 -5.476 1.00 1.00 C </line>
<line>ATOM 299 CA HIS A 19 6.042 -1.069 -7.149 1.00 1.00 C </line>
<line>ATOM 316 CA LEU A 20 8.542 0.060 -4.457 1.00 1.00 C </line>
<line>ATOM 335 CA PRO A 21 11.663 -1.319 -6.298 1.00 1.00 C </line>
<line>ATOM 349 CA ASN A 22 13.843 -1.100 -3.184 1.00 1.00 C </line>
<line>ATOM 363 CA LEU A 23 12.220 -3.773 -0.899 1.00 1.00 C </line>
<line>ATOM 382 CA ASN A 24 11.123 -7.357 -1.260 1.00 1.00 C </line>
<line>ATOM 396 CA GLU A 25 7.496 -8.222 -1.648 1.00 1.00 C </line>
<line>ATOM 411 CA GLU A 26 7.436 -10.775 1.140 1.00 1.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLU GLU ASN LEU ASN PRO LEU HIS LEU ILE GLU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 16.50 13.57 15.90 15.61 15.88 13.25 10.37 7.62 5.58 6.10 3.81 </line>
<line>GLU CA 15.98 12.81 14.36 13.26 13.03 10.72 7.47 5.71 5.07 3.83 </line>
<line>ILE CA 12.65 9.77 11.35 10.35 11.00 9.48 5.80 5.38 3.80 </line>
<line>LEU CA 11.45 8.18 10.33 10.36 11.18 8.79 6.21 3.78 </line>
<line>HIS CA 12.84 9.14 10.00 9.19 8.75 5.69 3.84 </line>
<line>LEU CA 12.25 8.81 8.48 6.39 5.57 3.88 </line>
<line>PRO CA 12.75 9.31 7.88 5.96 3.81 </line>
<line>ASN CA 12.38 9.66 7.09 3.87 </line>
<line>LEU CA 8.72 6.53 3.77 </line>
<line>ASN CA 5.57 3.75 </line>
<line>GLU CA 3.78 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>TYR CA 503</line>
<line>GLU CA 556</line>
<line>ILE CA 667</line>
<line>LEU CA 578</line>
<line>HIS CA 473</line>
<line>LEU CA 515</line>
<line>PRO CA 400</line>
<line>ASN CA 406</line>
<line>LEU CA 458</line>
<line>ASN CA 392</line>
<line>GLU CA 456</line>
<line>GLU CA 347</line>
</n14>
</entryChain>
<parallel>
<x>-13.904999732971191</x>
<y>28.979000091552734</y>
<z>69.93199920654297</z>
</parallel>
<rotation>
<x>0.16200000047683716</x>
<y>0.9869999885559082</y>
<z>0.013000000268220901</z>
<x>-0.12399999797344208</x>
<y>0.007000000216066837</y>
<z>0.9919999837875366</z>
<x>0.9789999723434448</x>
<y>-0.16200000047683716</y>
<z>0.12399999797344208</z>
</rotation>
<rmsd>2.8232710361480713</rmsd>
<dmax>4.417184829711914</dmax>
</indel>