NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B1GA-1AK8A
confEVID 1B1GA-1AK8A
pdbIDA 1B1G
pdbIDB 1AK8
pdbChainA A
pdbChainB A
identity 0.181799992918968
indelSize 3
alignment <alignment>
<seq1>----KSPEELKGIFEKYAAKEGDP-NQLSKEELKLLLQTEFPSLLKGGSTLDELFEEL---DKNGDGEVSFEEFQVLVKKISQ</seq1>
<seq2>MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK--</seq2>
<ss_1>---- HHHHHHHHHHHH - EEEHHHHHHHHHH HHHHHHHH--- EEE HHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHHHHH HHHHHH ----- HHHHHHHH HHHHHHHHH --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B1G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B1GA</entryIDChain>
<sequence>KEGDP-NQLSK</sequence>
<secondary-structure> - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 244 CA LYS A 16 0.495 -9.648 -7.571 1.00 0.00 C </line>
<line>ATOM 266 CA GLU A 17 3.841 -11.526 -7.464 1.00 0.00 C </line>
<line>ATOM 281 CA GLY A 18 4.915 -14.909 -5.969 1.00 0.00 C </line>
<line>ATOM 288 CA ASP A 19 3.544 -14.220 -2.483 1.00 0.00 C </line>
<line>ATOM 300 CA PRO A 20 -0.278 -13.994 -1.995 1.00 0.00 C </line>
<line>ATOM 314 CA ASN A 21 -0.202 -12.052 1.304 1.00 0.00 C </line>
<line>ATOM 328 CA GLN A 22 2.477 -9.289 1.496 1.00 0.00 C </line>
<line>ATOM 345 CA LEU A 23 3.180 -6.117 -0.478 1.00 0.00 C </line>
<line>ATOM 364 CA SER A 24 6.798 -6.237 -1.685 1.00 0.00 C </line>
<line>ATOM 375 CA LYS A 25 8.639 -2.907 -2.241 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> LYS SER LEU GLN ASN PRO ASP GLY GLU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.84 9.27 8.37 9.29 9.22 7.11 7.49 7.06 3.84 </line>
<line>GLU CA 11.16 8.37 8.86 9.34 9.67 7.28 5.67 3.85 </line>
<line>GLY CA 13.11 9.85 10.51 9.66 9.34 6.60 3.81 </line>
<line>ASP CA 12.41 8.66 8.36 6.43 5.75 3.86 </line>
<line>PRO CA 14.23 10.50 8.74 6.47 3.83 </line>
<line>ASN CA 13.20 9.58 7.06 3.85 </line>
<line>GLN CA 9.63 6.17 3.80 </line>
<line>LEU CA 6.57 3.82 </line>
<line>SER CA 3.85 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>LYS CA 471</line>
<line>GLU CA 381</line>
<line>GLY CA 272</line>
<line>ASP CA 335</line>
<line>PRO CA 353</line>
<line>ASN CA 464</line>
<line>GLN CA 601</line>
<line>LEU CA 757</line>
<line>SER CA 646</line>
<line>LYS CA 636</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AK8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AK8A</entryIDChain>
<sequence>FDKDGDGTITT</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 299 CA PHE A 19 2.925 -3.745 0.457 1.00 0.00 C </line>
<line>ATOM 319 CA ASP A 20 2.903 -3.604 4.239 1.00 0.00 C </line>
<line>ATOM 331 CA LYS A 21 6.480 -4.535 5.054 1.00 0.00 C </line>
<line>ATOM 353 CA ASP A 22 5.810 -3.532 8.641 1.00 0.00 C </line>
<line>ATOM 365 CA GLY A 23 3.154 -6.128 9.373 1.00 0.00 C </line>
<line>ATOM 372 CA ASP A 24 1.729 -3.464 11.653 1.00 0.00 C </line>
<line>ATOM 384 CA GLY A 25 -1.434 -3.220 9.588 1.00 0.00 C </line>
<line>ATOM 391 CA THR A 26 -0.656 -0.040 7.688 1.00 0.00 C </line>
<line>ATOM 405 CA ILE A 27 0.960 0.864 4.386 1.00 0.00 C </line>
<line>ATOM 424 CA THR A 28 2.988 4.058 4.468 1.00 0.00 C </line>
<line>ATOM 438 CA THR A 29 4.929 5.633 1.626 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> THR THR ILE THR GLY ASP GLY ASP LYS ASP PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 9.66 8.77 6.37 8.88 10.13 11.26 9.23 8.68 5.86 3.78 </line>
<line>ASP CA 9.81 7.67 4.87 6.10 6.90 7.51 5.73 5.28 3.78 </line>
<line>LYS CA 10.84 9.29 7.75 8.84 9.22 8.20 5.68 3.78 </line>
<line>ASP CA 11.58 9.11 7.81 7.41 7.31 5.07 3.79 </line>
<line>GLY CA 14.19 11.31 8.86 7.38 5.44 3.78 </line>
<line>ASP CA 13.91 10.48 8.49 5.76 3.79 </line>
<line>GLY CA 13.50 9.94 7.03 3.79 </line>
<line>THR CA 10.01 6.36 3.79 </line>
<line>ILE CA 6.79 3.78 </line>
<line>THR CA 3.78 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>PHE CA 704</line>
<line>ASP CA 610</line>
<line>LYS CA 457</line>
<line>ASP CA 397</line>
<line>GLY CA 395</line>
<line>ASP CA 358</line>
<line>GLY CA 476</line>
<line>THR CA 589</line>
<line>ILE CA 724</line>
<line>THR CA 662</line>
<line>THR CA 639</line>
</n14>
</entryChain>
<parallel>
<x>-0.2709999978542328</x>
<y>-8.47700023651123</y>
<z>-9.072999954223633</z>
</parallel>
<rotation>
<x>0.7319999933242798</x>
<y>-0.5379999876022339</y>
<z>-0.4180000126361847</z>
<x>0.6809999942779541</x>
<y>0.6010000109672546</y>
<z>0.4180000126361847</z>
<x>0.026000000536441803</x>
<y>-0.5910000205039978</y>
<z>0.8059999942779541</z>
</rotation>
<rmsd>1.7739349603652954</rmsd>
<dmax>3.203386068344116</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1B1G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B1GA</entryIDChain>
<sequence>LFEEL---DKNGD</sequence>
<secondary-structure>HHHHH--- </secondary-structure>
<atom-coordinate>
<line>ATOM 761 CA LEU A 49 7.517 5.796 1.609 1.00 0.00 C </line>
<line>ATOM 780 CA PHE A 50 7.726 1.999 1.989 1.00 0.00 C </line>
<line>ATOM 800 CA GLU A 51 10.253 2.757 4.747 1.00 0.00 C </line>
<line>ATOM 815 CA GLU A 52 7.660 4.759 6.712 1.00 0.00 C </line>
<line>ATOM 830 CA LEU A 53 5.175 1.995 5.960 1.00 0.00 C </line>
<line>ATOM 849 CA ASP A 54 7.055 -1.158 6.965 1.00 0.00 C </line>
<line>ATOM 861 CA LYS A 55 7.358 -1.002 10.754 1.00 0.00 C </line>
<line>ATOM 883 CA ASN A 56 10.785 -2.763 11.034 1.00 0.00 C </line>
<line>ATOM 897 CA GLY A 57 10.614 -5.854 8.794 1.00 0.00 C </line>
<line>ATOM 904 CA ASP A 58 12.227 -4.914 6.078 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLY ASN LYS ASP LEU GLU GLU PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.52 14.03 13.14 11.40 8.79 6.23 5.21 5.15 3.82 </line>
<line>PHE CA 9.21 10.79 10.67 9.27 5.93 4.72 5.47 3.82 </line>
<line>GLU CA 8.03 9.52 8.38 7.65 5.52 5.28 3.82 </line>
<line>GLU CA 10.72 11.21 9.22 7.04 5.95 3.79 </line>
<line>LEU CA 9.87 9.96 8.94 6.06 3.81 </line>
<line>ASP CA 6.45 6.17 5.75 3.80 </line>
<line>LYS CA 7.80 6.16 3.86 </line>
<line>ASN CA 5.59 3.82 </line>
<line>GLY CA 3.30 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LEU CA 624</line>
<line>PHE CA 671</line>
<line>GLU CA 498</line>
<line>GLU CA 534</line>
<line>LEU CA 670</line>
<line>ASP CA 567</line>
<line>LYS CA 417</line>
<line>ASN CA 298</line>
<line>GLY CA 338</line>
<line>ASP CA 377</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AK8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AK8A</entryIDChain>
<sequence>LQDMINEVDADGN</sequence>
<secondary-structure>HHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 722 CA LEU A 48 3.325 7.917 -3.325 1.00 0.00 C </line>
<line>ATOM 741 CA GLN A 49 1.889 10.499 -0.960 1.00 0.00 C </line>
<line>ATOM 758 CA ASP A 50 -0.559 11.342 -3.721 1.00 0.00 C </line>
<line>ATOM 770 CA MET A 51 -1.236 7.663 -4.300 1.00 0.00 C </line>
<line>ATOM 787 CA ILE A 52 -1.778 7.108 -0.596 1.00 0.00 C </line>
<line>ATOM 806 CA ASN A 53 -4.016 10.160 -0.591 1.00 0.00 C </line>
<line>ATOM 820 CA GLU A 54 -5.935 8.562 -3.435 1.00 0.00 C </line>
<line>ATOM 835 CA VAL A 55 -7.409 5.863 -1.228 1.00 0.00 C </line>
<line>ATOM 851 CA ASP A 56 -6.885 7.238 2.259 1.00 0.00 C </line>
<line>ATOM 863 CA ALA A 57 -9.947 9.432 2.629 1.00 0.00 C </line>
<line>ATOM 873 CA ASP A 58 -9.147 9.768 6.313 1.00 0.00 C </line>
<line>ATOM 885 CA GLY A 59 -5.929 11.619 5.574 1.00 0.00 C </line>
<line>ATOM 892 CA ASN A 60 -4.091 9.758 8.311 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASN GLY ASP ALA ASP VAL GLU ASN ILE MET ASP GLN LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.92 13.36 15.87 14.63 11.66 11.13 9.28 8.15 5.84 4.67 5.19 3.78 </line>
<line>GLN CA 11.06 10.25 13.24 12.41 9.90 10.39 8.43 5.93 5.01 5.38 3.79 </line>
<line>ASP CA 12.64 10.74 13.30 11.49 9.62 9.12 6.06 4.81 5.40 3.79 </line>
<line>MET CA 13.10 11.63 13.40 11.27 8.67 7.13 4.86 5.26 3.78 </line>
<line>ILE CA 9.58 8.70 10.45 9.08 5.85 5.80 5.24 3.78 </line>
<line>ASN CA 8.91 6.62 8.61 6.79 4.99 5.51 3.78 </line>
<line>GLU CA 11.95 9.51 10.33 7.32 5.92 3.79 </line>
<line>VAL CA 10.82 9.03 8.67 5.84 3.78 </line>
<line>ASP CA 7.13 5.58 5.29 3.79 </line>
<line>ALA CA 8.17 5.44 3.78 </line>
<line>ASP CA 5.44 3.79 </line>
<line>GLY CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 548</line>
<line>GLN CA 484</line>
<line>ASP CA 431</line>
<line>MET CA 592</line>
<line>ILE CA 636</line>
<line>ASN CA 477</line>
<line>GLU CA 488</line>
<line>VAL CA 535</line>
<line>ASP CA 487</line>
<line>ALA CA 340</line>
<line>ASP CA 284</line>
<line>GLY CA 317</line>
<line>ASN CA 344</line>
</n14>
</entryChain>
<parallel>
<x>10.982999801635742</x>
<y>-7.322999954223633</y>
<z>6.434000015258789</z>
</parallel>
<rotation>
<x>-0.10999999940395355</x>
<y>0.13199999928474426</y>
<z>-0.9850000143051147</z>
<x>0.9929999709129333</x>
<y>-0.035999998450279236</y>
<z>-0.11500000208616257</z>
<x>-0.050999999046325684</x>
<y>-0.9909999966621399</y>
<z>-0.12700000405311584</z>
</rotation>
<rmsd>2.4200539588928223</rmsd>
<dmax>3.4094059467315674</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1AK8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AK8A</entryIDChain>
<sequence>VMRSL-----GQNPT</sequence>
<secondary-structure>H ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 529 CA VAL A 35 6.861 -3.478 -3.355 1.00 0.00 C </line>
<line>ATOM 545 CA MET A 36 7.159 -1.254 -6.403 1.00 0.00 C </line>
<line>ATOM 562 CA ARG A 37 10.621 -2.738 -6.777 1.00 0.00 C </line>
<line>ATOM 586 CA SER A 38 8.868 -5.940 -7.778 1.00 0.00 C </line>
<line>ATOM 597 CA LEU A 39 7.128 -4.172 -10.637 1.00 0.00 C </line>
<line>ATOM 616 CA GLY A 40 10.418 -2.449 -11.367 1.00 0.00 C </line>
<line>ATOM 623 CA GLN A 41 9.192 0.925 -10.166 1.00 0.00 C </line>
<line>ATOM 640 CA ASN A 42 10.386 3.355 -7.521 1.00 0.00 C </line>
<line>ATOM 654 CA PRO A 43 8.506 6.664 -7.336 1.00 0.00 C </line>
<line>ATOM 668 CA THR A 44 9.410 9.505 -5.005 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> THR PRO ASN GLN GLY LEU SER ARG MET VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 13.33 11.02 8.74 8.44 8.83 7.32 5.45 5.14 3.78 </line>
<line>MET CA 11.08 8.09 5.74 4.80 6.06 5.14 5.17 3.79 </line>
<line>ARG CA 12.43 9.65 6.14 5.19 4.60 5.40 3.79 </line>
<line>SER CA 15.70 12.62 9.42 7.28 5.24 3.79 </line>
<line>LEU CA 14.97 11.41 8.77 5.52 3.78 </line>
<line>GLY CA 13.58 10.15 6.96 3.79 </line>
<line>GLN CA 10.01 6.44 3.79 </line>
<line>ASN CA 6.72 3.81 </line>
<line>PRO CA 3.78 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 529</line>
<line>MET CA 488</line>
<line>ARG CA 340</line>
<line>SER CA 306</line>
<line>LEU CA 279</line>
<line>GLY CA 226</line>
<line>GLN CA 316</line>
<line>ASN CA 369</line>
<line>PRO CA 396</line>
<line>THR CA 347</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B1G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B1GA</entryIDChain>
<sequence>LLQTEFPSLLKGGST</sequence>
<secondary-structure>HHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 487 CA LEU A 31 -0.315 -0.442 -6.821 1.00 0.00 C </line>
<line>ATOM 506 CA LEU A 32 0.628 3.227 -6.445 1.00 0.00 C </line>
<line>ATOM 525 CA GLN A 33 1.014 3.777 -10.176 1.00 0.00 C </line>
<line>ATOM 542 CA THR A 34 -2.467 2.444 -11.017 1.00 0.00 C </line>
<line>ATOM 556 CA GLU A 35 -4.463 3.658 -7.999 1.00 0.00 C </line>
<line>ATOM 571 CA PHE A 36 -2.727 6.650 -6.256 1.00 0.00 C </line>
<line>ATOM 591 CA PRO A 37 -0.756 8.818 -8.800 1.00 0.00 C </line>
<line>ATOM 605 CA SER A 38 -2.547 12.135 -8.064 1.00 0.00 C </line>
<line>ATOM 616 CA LEU A 39 -3.031 11.206 -4.390 1.00 0.00 C </line>
<line>ATOM 635 CA LEU A 40 0.787 11.247 -3.808 1.00 0.00 C </line>
<line>ATOM 654 CA LYS A 41 0.889 15.054 -3.336 1.00 0.00 C </line>
<line>ATOM 676 CA GLY A 42 4.283 14.774 -1.571 1.00 0.00 C </line>
<line>ATOM 683 CA GLY A 43 8.059 14.486 -2.117 1.00 0.00 C </line>
<line>ATOM 690 CA SER A 44 8.498 10.923 -0.732 1.00 0.00 C </line>
<line>ATOM 701 CA THR A 45 9.786 8.350 -3.254 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER GLY GLY LYS LEU LEU SER PRO PHE GLU THR GLN LEU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.86 15.62 17.75 16.74 15.93 12.12 12.21 12.83 9.48 7.51 5.95 5.53 5.55 3.81 </line>
<line>LEU CA 10.97 12.40 14.17 13.06 12.23 8.44 9.02 9.59 6.22 4.80 5.34 5.58 3.79 </line>
<line>GLN CA 12.07 14.01 15.14 14.34 13.19 9.82 10.25 9.33 5.52 6.13 5.89 3.82 </line>
<line>THR CA 15.66 17.26 18.30 16.94 15.14 11.83 11.00 10.13 6.96 6.36 3.82 </line>
<line>GLU CA 15.73 16.54 17.57 15.54 13.43 10.14 8.49 8.69 6.40 3.87 </line>
<line>PHE CA 12.98 13.22 13.96 11.71 9.60 6.28 4.93 5.78 3.88 </line>
<line>PRO CA 11.92 12.46 12.43 10.64 8.45 5.76 5.51 3.84 </line>
<line>SER CA 13.77 13.31 12.38 9.79 6.53 5.48 3.82 </line>
<line>LEU CA 13.18 12.10 11.79 8.61 5.59 3.86 </line>
<line>LEU CA 9.47 8.31 8.14 5.45 3.84 </line>
<line>LYS CA 11.14 9.04 7.30 3.84 </line>
<line>GLY CA 8.62 5.77 3.83 </line>
<line>GLY CA 6.48 3.85 </line>
<line>SER CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>LEU CA 703</line>
<line>LEU CA 707</line>
<line>GLN CA 472</line>
<line>THR CA 430</line>
<line>GLU CA 533</line>
<line>PHE CA 582</line>
<line>PRO CA 420</line>
<line>SER CA 318</line>
<line>LEU CA 444</line>
<line>LEU CA 503</line>
<line>LYS CA 304</line>
<line>GLY CA 327</line>
<line>GLY CA 264</line>
<line>SER CA 390</line>
<line>THR CA 411</line>
</n14>
</entryChain>
<parallel>
<x>7.875999927520752</x>
<y>-9.090999603271484</y>
<z>-1.815000057220459</z>
</parallel>
<rotation>
<x>0.4350000023841858</x>
<y>0.6620000004768372</y>
<z>0.6100000143051147</z>
<x>0.5379999876022339</x>
<y>0.3529999852180481</y>
<z>-0.765999972820282</z>
<x>-0.7229999899864197</x>
<y>0.6610000133514404</y>
<z>-0.2029999941587448</z>
</rotation>
<rmsd>4.720215797424316</rmsd>
<dmax>6.132115840911865</dmax>
</indel>