NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B1GA-1CLMA
confEVID 1B1GA-1CLMA
pdbIDA 1B1G
pdbIDB 1CLM
pdbChainA A
pdbChainB A
identity 0.123999997973442
indelSize 3
alignment <alignment>
<seq1>KSPEELKGIFEKYAAK-EGDPNQLSKEELKLLLQTEFPSLLKGGSTLDELFEEL---DKNGDGEVSFEEFQVLVKK--------------------------------------------------ISQ--------------------</seq1>
<seq2>LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS</seq2>
<ss_1> HHHHHHHHHHHH - EEEHHHHHHHHHH HHHHHHHH--- EEE HHHHHHHHHH-------------------------------------------------- --------------------</ss_1>
<ss_2> HHHHHHHHHHHHHH EEE HHHHHHHHHH ----- HHHHHHHHH EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHH HHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B1G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B1GA</entryIDChain>
<sequence>KYAAK-EGDPN</sequence>
<secondary-structure>HHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 181 CA LYS A 12 -5.685 -7.990 -4.598 1.00 0.00 C </line>
<line>ATOM 203 CA TYR A 13 -2.341 -6.192 -5.055 1.00 0.00 C </line>
<line>ATOM 224 CA ALA A 14 -0.561 -8.067 -2.220 1.00 0.00 C </line>
<line>ATOM 234 CA ALA A 15 -1.105 -11.139 -4.416 1.00 0.00 C </line>
<line>ATOM 244 CA LYS A 16 0.495 -9.648 -7.571 1.00 0.00 C </line>
<line>ATOM 266 CA GLU A 17 3.841 -11.526 -7.464 1.00 0.00 C </line>
<line>ATOM 281 CA GLY A 18 4.915 -14.909 -5.969 1.00 0.00 C </line>
<line>ATOM 288 CA ASP A 19 3.544 -14.220 -2.483 1.00 0.00 C </line>
<line>ATOM 300 CA PRO A 20 -0.278 -13.994 -1.995 1.00 0.00 C </line>
<line>ATOM 314 CA ASN A 21 -0.202 -12.052 1.304 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASN PRO ASP GLY GLU LYS ALA ALA TYR LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 9.02 8.49 11.33 12.73 10.56 7.06 5.56 5.65 3.82 </line>
<line>TYR CA 8.91 8.63 10.28 11.38 8.51 5.13 5.14 3.84 </line>
<line>ALA CA 5.33 5.94 7.40 9.53 7.67 5.68 3.82 </line>
<line>ALA CA 5.86 3.83 5.90 7.27 5.82 3.84 </line>
<line>LYS CA 9.22 7.11 7.49 7.06 3.84 </line>
<line>GLU CA 9.67 7.28 5.67 3.85 </line>
<line>GLY CA 9.34 6.60 3.81 </line>
<line>ASP CA 5.75 3.86 </line>
<line>PRO CA 3.83 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 530</line>
<line>TYR CA 643</line>
<line>ALA CA 642</line>
<line>ALA CA 451</line>
<line>LYS CA 471</line>
<line>GLU CA 381</line>
<line>GLY CA 272</line>
<line>ASP CA 335</line>
<line>PRO CA 353</line>
<line>ASN CA 464</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>AFALFDKDGDG</sequence>
<secondary-structure>HHHHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 95 CA ALA A 15 -8.747 42.166 32.335 1.00 20.66 C </line>
<line>ATOM 100 CA PHE A 16 -10.702 45.110 30.669 1.00 17.42 C </line>
<line>ATOM 111 CA ALA A 17 -10.479 46.895 33.998 1.00 19.08 C </line>
<line>ATOM 116 CA LEU A 18 -6.691 47.062 34.091 1.00 22.69 C </line>
<line>ATOM 124 CA PHE A 19 -6.706 48.862 30.719 1.00 22.00 C </line>
<line>ATOM 135 CA ASP A 20 -9.625 51.161 31.532 1.00 16.68 C </line>
<line>ATOM 143 CA LYS A 21 -7.776 53.381 34.020 1.00 20.86 C </line>
<line>ATOM 152 CA ASP A 22 -10.516 55.875 34.751 1.00 20.74 C </line>
<line>ATOM 160 CA GLY A 23 -13.469 53.528 34.855 1.00 18.32 C </line>
<line>ATOM 164 CA ASP A 24 -15.572 55.043 32.022 1.00 16.32 C </line>
<line>ATOM 172 CA GLY A 25 -16.173 51.846 30.010 1.00 13.73 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASP GLY ASP LYS ASP PHE LEU ALA PHE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.42 14.58 12.56 14.03 11.38 9.07 7.18 5.59 5.30 3.91 </line>
<line>PHE CA 8.70 11.15 9.80 11.51 9.39 6.21 5.48 5.62 3.78 </line>
<line>ALA CA 8.53 9.81 7.33 9.01 7.03 5.00 5.37 3.79 </line>
<line>LEU CA 11.38 12.12 9.40 9.63 6.41 5.65 3.82 </line>
<line>PHE CA 9.95 10.89 9.20 8.94 5.70 3.80 </line>
<line>ASP CA 6.76 7.12 5.61 5.78 3.81 </line>
<line>LYS CA 9.43 8.22 5.76 3.78 </line>
<line>ASP CA 8.41 5.81 3.77 </line>
<line>GLY CA 5.80 3.84 </line>
<line>ASP CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 271</line>
<line>PHE CA 313</line>
<line>ALA CA 259</line>
<line>LEU CA 254</line>
<line>PHE CA 319</line>
<line>ASP CA 275</line>
<line>LYS CA 224</line>
<line>ASP CA 166</line>
<line>GLY CA 180</line>
<line>ASP CA 176</line>
<line>GLY CA 233</line>
</n14>
</entryChain>
<parallel>
<x>9.77400016784668</x>
<y>-59.57099914550781</y>
<z>-38.152000427246094</z>
</parallel>
<rotation>
<x>-0.38199999928474426</x>
<y>-0.20100000500679016</y>
<z>-0.9020000100135803</z>
<x>0.8539999723434448</x>
<y>-0.44999998807907104</y>
<z>-0.2619999945163727</z>
<x>-0.3529999852180481</x>
<y>-0.8700000047683716</y>
<z>0.3440000116825104</z>
</rotation>
<rmsd>1.8903520107269287</rmsd>
<dmax>2.6875081062316895</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1B1G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B1GA</entryIDChain>
<sequence>LFEEL---DKNGD</sequence>
<secondary-structure>HHHHH--- </secondary-structure>
<atom-coordinate>
<line>ATOM 761 CA LEU A 49 7.517 5.796 1.609 1.00 0.00 C </line>
<line>ATOM 780 CA PHE A 50 7.726 1.999 1.989 1.00 0.00 C </line>
<line>ATOM 800 CA GLU A 51 10.253 2.757 4.747 1.00 0.00 C </line>
<line>ATOM 815 CA GLU A 52 7.660 4.759 6.712 1.00 0.00 C </line>
<line>ATOM 830 CA LEU A 53 5.175 1.995 5.960 1.00 0.00 C </line>
<line>ATOM 849 CA ASP A 54 7.055 -1.158 6.965 1.00 0.00 C </line>
<line>ATOM 861 CA LYS A 55 7.358 -1.002 10.754 1.00 0.00 C </line>
<line>ATOM 883 CA ASN A 56 10.785 -2.763 11.034 1.00 0.00 C </line>
<line>ATOM 897 CA GLY A 57 10.614 -5.854 8.794 1.00 0.00 C </line>
<line>ATOM 904 CA ASP A 58 12.227 -4.914 6.078 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP GLY ASN LYS ASP LEU GLU GLU PHE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.52 14.03 13.14 11.40 8.79 6.23 5.21 5.15 3.82 </line>
<line>PHE CA 9.21 10.79 10.67 9.27 5.93 4.72 5.47 3.82 </line>
<line>GLU CA 8.03 9.52 8.38 7.65 5.52 5.28 3.82 </line>
<line>GLU CA 10.72 11.21 9.22 7.04 5.95 3.79 </line>
<line>LEU CA 9.87 9.96 8.94 6.06 3.81 </line>
<line>ASP CA 6.45 6.17 5.75 3.80 </line>
<line>LYS CA 7.80 6.16 3.86 </line>
<line>ASN CA 5.59 3.82 </line>
<line>GLY CA 3.30 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LEU CA 624</line>
<line>PHE CA 671</line>
<line>GLU CA 498</line>
<line>GLU CA 534</line>
<line>LEU CA 670</line>
<line>ASP CA 567</line>
<line>LYS CA 417</line>
<line>ASN CA 298</line>
<line>GLY CA 338</line>
<line>ASP CA 377</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>LQDMINEVDADGN</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 340 CA LEU A 48 -1.094 53.085 19.472 1.00 26.05 C </line>
<line>ATOM 348 CA GLN A 49 -3.476 54.185 16.736 1.00 24.48 C </line>
<line>ATOM 357 CA ASP A 50 -2.829 51.117 14.673 1.00 24.41 C </line>
<line>ATOM 365 CA MET A 51 -3.472 48.890 17.688 1.00 22.32 C </line>
<line>ATOM 373 CA ILE A 52 -6.832 50.552 18.368 1.00 19.65 C </line>
<line>ATOM 381 CA ASN A 53 -7.871 50.487 14.654 1.00 23.35 C </line>
<line>ATOM 389 CA GLU A 54 -7.518 46.707 14.572 1.00 28.94 C </line>
<line>ATOM 398 CA VAL A 55 -10.030 46.284 17.463 1.00 24.14 C </line>
<line>ATOM 405 CA ASP A 56 -12.278 49.306 17.004 1.00 21.84 C </line>
<line>ATOM 413 CA ALA A 57 -15.244 47.982 15.086 1.00 22.22 C </line>
<line>ATOM 418 CA ASP A 58 -17.678 50.955 15.180 1.00 22.82 C </line>
<line>ATOM 426 CA GLY A 59 -14.972 53.574 14.353 1.00 20.50 C </line>
<line>ATOM 430 CA ASN A 60 -15.576 55.804 17.400 1.00 15.68 C </line>
</atom-coordinate>
<distance-map>
<line> ASN GLY ASP ALA ASP VAL GLU ASN ILE MET ASP GLN LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.88 14.80 17.26 15.67 12.06 11.41 10.29 8.71 6.37 5.14 5.47 3.79 </line>
<line>GLN CA 12.23 11.76 14.65 13.40 10.07 10.29 8.77 6.11 5.21 5.38 3.75 </line>
<line>ASP CA 13.85 12.39 14.86 12.81 9.90 9.11 6.44 5.08 5.48 3.80 </line>
<line>MET CA 13.94 12.86 14.57 12.09 8.84 7.06 5.55 5.58 3.81 </line>
<line>ILE CA 10.25 9.57 11.31 9.39 5.75 5.41 5.45 3.86 </line>
<line>ASN CA 9.76 7.75 9.83 7.80 5.13 5.50 3.80 </line>
<line>GLU CA 12.48 10.14 11.03 7.85 5.94 3.85 </line>
<line>VAL CA 11.02 9.34 9.25 5.98 3.79 </line>
<line>ASP CA 7.30 5.70 5.93 3.77 </line>
<line>ALA CA 8.16 5.65 3.84 </line>
<line>ASP CA 5.73 3.86 </line>
<line>GLY CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 253</line>
<line>GLN CA 220</line>
<line>ASP CA 192</line>
<line>MET CA 288</line>
<line>ILE CA 313</line>
<line>ASN CA 226</line>
<line>GLU CA 242</line>
<line>VAL CA 286</line>
<line>ASP CA 249</line>
<line>ALA CA 189</line>
<line>ASP CA 147</line>
<line>GLY CA 155</line>
<line>ASN CA 170</line>
</n14>
</entryChain>
<parallel>
<x>15.803999900817871</x>
<y>-49.21099853515625</y>
<z>-10.555000305175781</z>
</parallel>
<rotation>
<x>0.041999999433755875</x>
<y>0.8159999847412109</y>
<z>-0.5759999752044678</z>
<x>0.21899999678134918</x>
<y>-0.5699999928474426</y>
<z>-0.7919999957084656</z>
<x>-0.9750000238418579</x>
<y>-0.09200000017881393</y>
<z>-0.20200000703334808</z>
</rotation>
<rmsd>2.7738900184631348</rmsd>
<dmax>4.147934913635254</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1CLM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1CLMA</entryIDChain>
<sequence>VMRSL-----GQNPT</sequence>
<secondary-structure>HHHH ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 242 CA VAL A 35 -0.316 49.955 30.122 1.00 27.94 C </line>
<line>ATOM 249 CA MET A 36 2.414 49.400 27.483 1.00 32.30 C </line>
<line>ATOM 257 CA ARG A 37 4.723 51.809 29.375 1.00 34.74 C </line>
<line>ATOM 268 CA SER A 38 4.234 49.846 32.567 1.00 37.39 C </line>
<line>ATOM 274 CA LEU A 39 5.413 46.712 30.717 1.00 38.05 C </line>
<line>ATOM 282 CA GLY A 40 8.647 48.496 29.565 1.00 37.57 C </line>
<line>ATOM 286 CA GLN A 41 7.593 49.321 25.967 1.00 39.19 C </line>
<line>ATOM 295 CA ASN A 42 7.049 52.985 25.028 1.00 39.14 C </line>
<line>ATOM 303 CA PRO A 43 4.980 53.138 21.760 1.00 36.55 C </line>
<line>ATOM 310 CA THR A 44 4.455 56.395 19.813 1.00 36.83 C </line>
</atom-coordinate>
<distance-map>
<line> THR PRO ASN GLN GLY LEU SER ARG MET VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 13.06 10.40 9.45 8.96 9.10 6.61 5.17 5.42 3.84 </line>
<line>MET CA 10.58 7.30 6.35 5.40 6.63 5.17 5.42 3.84 </line>
<line>ARG CA 10.61 7.73 5.07 5.10 5.14 5.32 3.78 </line>
<line>SER CA 14.34 11.32 8.64 7.42 5.51 3.83 </line>
<line>LEU CA 14.61 11.03 8.63 5.84 3.87 </line>
<line>GLY CA 13.23 9.79 6.58 3.84 </line>
<line>GLN CA 9.89 6.25 3.82 </line>
<line>ASN CA 6.75 3.87 </line>
<line>PRO CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 249</line>
<line>MET CA 223</line>
<line>ARG CA 174</line>
<line>SER CA 146</line>
<line>LEU CA 127</line>
<line>GLY CA 107</line>
<line>GLN CA 142</line>
<line>ASN CA 158</line>
<line>PRO CA 189</line>
<line>THR CA 168</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B1G</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B1GA</entryIDChain>
<sequence>LLQTEFPSLLKGGST</sequence>
<secondary-structure>HHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 487 CA LEU A 31 -0.315 -0.442 -6.821 1.00 0.00 C </line>
<line>ATOM 506 CA LEU A 32 0.628 3.227 -6.445 1.00 0.00 C </line>
<line>ATOM 525 CA GLN A 33 1.014 3.777 -10.176 1.00 0.00 C </line>
<line>ATOM 542 CA THR A 34 -2.467 2.444 -11.017 1.00 0.00 C </line>
<line>ATOM 556 CA GLU A 35 -4.463 3.658 -7.999 1.00 0.00 C </line>
<line>ATOM 571 CA PHE A 36 -2.727 6.650 -6.256 1.00 0.00 C </line>
<line>ATOM 591 CA PRO A 37 -0.756 8.818 -8.800 1.00 0.00 C </line>
<line>ATOM 605 CA SER A 38 -2.547 12.135 -8.064 1.00 0.00 C </line>
<line>ATOM 616 CA LEU A 39 -3.031 11.206 -4.390 1.00 0.00 C </line>
<line>ATOM 635 CA LEU A 40 0.787 11.247 -3.808 1.00 0.00 C </line>
<line>ATOM 654 CA LYS A 41 0.889 15.054 -3.336 1.00 0.00 C </line>
<line>ATOM 676 CA GLY A 42 4.283 14.774 -1.571 1.00 0.00 C </line>
<line>ATOM 683 CA GLY A 43 8.059 14.486 -2.117 1.00 0.00 C </line>
<line>ATOM 690 CA SER A 44 8.498 10.923 -0.732 1.00 0.00 C </line>
<line>ATOM 701 CA THR A 45 9.786 8.350 -3.254 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER GLY GLY LYS LEU LEU SER PRO PHE GLU THR GLN LEU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.86 15.62 17.75 16.74 15.93 12.12 12.21 12.83 9.48 7.51 5.95 5.53 5.55 3.81 </line>
<line>LEU CA 10.97 12.40 14.17 13.06 12.23 8.44 9.02 9.59 6.22 4.80 5.34 5.58 3.79 </line>
<line>GLN CA 12.07 14.01 15.14 14.34 13.19 9.82 10.25 9.33 5.52 6.13 5.89 3.82 </line>
<line>THR CA 15.66 17.26 18.30 16.94 15.14 11.83 11.00 10.13 6.96 6.36 3.82 </line>
<line>GLU CA 15.73 16.54 17.57 15.54 13.43 10.14 8.49 8.69 6.40 3.87 </line>
<line>PHE CA 12.98 13.22 13.96 11.71 9.60 6.28 4.93 5.78 3.88 </line>
<line>PRO CA 11.92 12.46 12.43 10.64 8.45 5.76 5.51 3.84 </line>
<line>SER CA 13.77 13.31 12.38 9.79 6.53 5.48 3.82 </line>
<line>LEU CA 13.18 12.10 11.79 8.61 5.59 3.86 </line>
<line>LEU CA 9.47 8.31 8.14 5.45 3.84 </line>
<line>LYS CA 11.14 9.04 7.30 3.84 </line>
<line>GLY CA 8.62 5.77 3.83 </line>
<line>GLY CA 6.48 3.85 </line>
<line>SER CA 3.83 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>LEU CA 703</line>
<line>LEU CA 707</line>
<line>GLN CA 472</line>
<line>THR CA 430</line>
<line>GLU CA 533</line>
<line>PHE CA 582</line>
<line>PRO CA 420</line>
<line>SER CA 318</line>
<line>LEU CA 444</line>
<line>LEU CA 503</line>
<line>LYS CA 304</line>
<line>GLY CA 327</line>
<line>GLY CA 264</line>
<line>SER CA 390</line>
<line>THR CA 411</line>
</n14>
</entryChain>
<parallel>
<x>4.015999794006348</x>
<y>42.69300079345703</y>
<z>35.03799819946289</z>
</parallel>
<rotation>
<x>-0.10199999809265137</x>
<y>0.8339999914169312</y>
<z>-0.5429999828338623</z>
<x>0.9909999966621399</x>
<y>0.04100000113248825</y>
<z>-0.12399999797344208</z>
<x>-0.08100000023841858</x>
<y>-0.5509999990463257</y>
<z>-0.8309999704360962</z>
</rotation>
<rmsd>4.5978899002075195</rmsd>
<dmax>6.057559013366699</dmax>
</indel>