NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B26D-1AUPA
confEVID 1B26D-1AUPA
pdbIDA 1B26
pdbIDB 1AUP
pdbChainA D
pdbChainB A
identity 0.280499994754791
indelSize 3
alignment <alignment>
<seq1>------------------SLYEMAVEQFN----RA------ASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGF---DVEELIRYKKEHGTVVTYPKGERITNEELL--------------ELDVDILVPAALEGAIHAGNAERI---KAKAVVEGANGPTTPEADEILSRRG-ILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVD--MRTAAYILAIDRVAYATKKRG---</seq1>
<seq2>SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEV----ALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVL------------RPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNK---------VQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFE----------TAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW</seq2>
<ss_1>------------------ HHHHHHHHH----HH------HHH HHHHHHHH EEEEEEEEEEE EEEEEEEEEEEEE EEEEEE HHHHHHHHHHHHHHHHH EEEEEEE HHHHHHHHHHHHHH EEEE HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHH EEEEE HHHHHHHHHHH EEEEEEE EEEEE --- HHHHHHHHHH EEE HHHHH-------------- EEE HHHGGG --- EEE HHHHHHHHH - EEE GGHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH --HHHHHHHHHHHHHHHHHHH ---</ss_1>
<ss_2> HHHHHHHHHHHH HHHHHHHHHH HHHGGG HHHH---- HHHHH EEEEEEEEEEE EEEEEEEEEEEEE EEEEEE HHHHHHHHHHHHHHHHH EEEEEE HHHHHHHHHHHHHHHHHHH EEEEEE HHHHHHHHHHHHH ------------ HHHHHHHHHHHHHHHH EEEEE HHHHHHHHHHHHH- EEEEEEEEEEEEE HHHHHHHHHHH --------- HHHHHH EEE EEE HHHHHHHH EE HHHHHHHH EEE HHHHHGGG ---------- HHHHHHHHHHHHHHHHHHHHHHHH EEHHHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B26</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B26D</entryIDChain>
<sequence>NPEGF---DVEEL</sequence>
<secondary-structure>E --- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 11363 CA ASN D 248 48.040 158.939 26.208 1.00 91.34 C </line>
<line>ATOM 11371 CA PRO D 249 51.760 157.995 26.134 1.00 60.73 C </line>
<line>ATOM 11378 CA GLU D 250 51.826 157.850 29.947 1.00 92.69 C </line>
<line>ATOM 11387 CA GLY D 251 49.667 154.728 29.929 1.00100.00 C </line>
<line>ATOM 11391 CA PHE D 252 45.998 154.351 30.829 1.00 86.06 C </line>
<line>ATOM 11402 CA ASP D 253 44.712 152.732 34.008 1.00 81.26 C </line>
<line>ATOM 11410 CA VAL D 254 42.578 150.111 32.253 1.00 59.93 C </line>
<line>ATOM 11417 CA GLU D 255 40.498 149.555 35.407 1.00 67.08 C </line>
<line>ATOM 11426 CA GLU D 256 39.368 153.185 35.445 1.00100.00 C </line>
<line>ATOM 11435 CA LEU D 257 38.665 152.988 31.713 1.00 86.20 C </line>
</atom-coordinate>
<distance-map>
<line> LEU GLU GLU VAL ASP PHE GLY GLU PRO ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 12.39 13.92 15.15 12.01 10.51 6.82 5.85 5.43 3.84 </line>
<line>PRO CA 15.09 16.23 16.85 13.56 11.81 8.28 5.43 3.82 </line>
<line>GLU CA 14.14 14.39 15.06 12.28 9.66 6.85 3.80 </line>
<line>GLY CA 11.28 11.78 11.87 8.77 6.72 3.80 </line>
<line>PHE CA 7.51 8.16 8.61 5.63 3.79 </line>
<line>ASP CA 6.47 5.55 5.46 3.81 </line>
<line>VAL CA 4.89 5.47 3.82 </line>
<line>GLU CA 5.37 3.80 </line>
<line>GLU CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ASN CA 303</line>
<line>PRO CA 261</line>
<line>GLU CA 237</line>
<line>GLY CA 334</line>
<line>PHE CA 378</line>
<line>ASP CA 328</line>
<line>VAL CA 393</line>
<line>GLU CA 298</line>
<line>GLU CA 284</line>
<line>LEU CA 369</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AUP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AUPA</entryIDChain>
<sequence>DPEGITTEEKINY</sequence>
<secondary-structure> HHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1957 CA ASP A 268 -38.183 26.544 36.943 1.00 64.92 C </line>
<line>ATOM 1965 CA PRO A 269 -37.248 27.867 40.408 1.00 67.67 C </line>
<line>ATOM 1972 CA GLU A 270 -37.627 24.583 42.305 1.00 75.14 C </line>
<line>ATOM 1981 CA GLY A 271 -34.729 23.747 40.100 1.00 83.18 C </line>
<line>ATOM 1985 CA ILE A 272 -34.326 21.008 37.560 1.00 80.00 C </line>
<line>ATOM 1993 CA THR A 273 -32.861 18.870 40.378 1.00 58.90 C </line>
<line>ATOM 2000 CA THR A 274 -35.050 15.733 40.480 1.00100.00 C </line>
<line>ATOM 2007 CA GLU A 275 -34.408 12.288 39.029 1.00 86.51 C </line>
<line>ATOM 2016 CA GLU A 276 -37.643 12.826 37.113 1.00 57.67 C </line>
<line>ATOM 2025 CA LYS A 277 -37.353 16.457 36.007 1.00 34.14 C </line>
<line>ATOM 2034 CA ILE A 278 -34.017 15.650 34.346 1.00100.00 C </line>
<line>ATOM 2042 CA ASN A 279 -35.022 12.403 32.759 1.00100.00 C </line>
<line>ATOM 2050 CA TYR A 280 -37.529 14.467 30.859 1.00 62.85 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE LYS GLU GLU THR THR ILE GLY GLU PRO ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 13.54 15.08 11.95 10.16 13.73 14.89 11.80 9.95 6.78 5.45 5.74 3.83 </line>
<line>PRO CA 16.46 17.40 14.02 12.23 15.40 15.90 12.33 10.01 7.98 4.84 3.81 </line>
<line>GLU CA 15.28 15.69 12.50 10.28 12.85 13.12 9.40 7.69 6.80 3.74 </line>
<line>GLY CA 13.39 13.52 9.96 8.76 11.69 11.51 8.03 5.23 3.76 </line>
<line>ILE CA 9.90 9.88 6.26 5.68 8.84 8.84 6.07 3.83 </line>
<line>THR CA 11.48 10.22 6.93 6.72 8.37 6.89 3.83 </line>
<line>THR CA 10.02 8.41 6.22 5.08 5.15 3.79 </line>
<line>GLU CA 9.01 6.30 5.78 5.93 3.80 </line>
<line>GLU CA 6.47 5.10 5.36 3.81 </line>
<line>LYS CA 5.52 5.69 3.81 </line>
<line>ILE CA 5.09 3.75 </line>
<line>ASN CA 3.76 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASP CA 379</line>
<line>PRO CA 295</line>
<line>GLU CA 256</line>
<line>GLY CA 372</line>
<line>ILE CA 431</line>
<line>THR CA 345</line>
<line>THR CA 269</line>
<line>GLU CA 232</line>
<line>GLU CA 231</line>
<line>LYS CA 348</line>
<line>ILE CA 395</line>
<line>ASN CA 292</line>
<line>TYR CA 343</line>
</n14>
</entryChain>
<parallel>
<x>83.2760009765625</x>
<y>133.44700622558594</y>
<z>-7.507999897003174</z>
</parallel>
<rotation>
<x>0.30000001192092896</x>
<y>-0.8980000019073486</y>
<z>-0.3230000138282776</z>
<x>0.39100000262260437</x>
<y>0.42399999499320984</y>
<z>-0.8169999718666077</z>
<x>0.8700000047683716</x>
<y>0.11900000274181366</y>
<z>0.4779999852180481</z>
</rotation>
<rmsd>2.445565938949585</rmsd>
<dmax>4.044342994689941</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1B26</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B26D</entryIDChain>
<sequence>KYNVD--MRTAA</sequence>
<secondary-structure>H --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 12448 CA LYS D 387 59.394 125.182 7.804 1.00 74.08 C </line>
<line>ATOM 12457 CA TYR D 388 57.339 126.652 4.952 1.00 48.54 C </line>
<line>ATOM 12469 CA ASN D 389 58.666 130.227 5.172 1.00 58.00 C </line>
<line>ATOM 12477 CA VAL D 390 55.211 131.812 4.893 1.00 49.22 C </line>
<line>ATOM 12484 CA ASP D 391 52.890 134.217 6.722 1.00 68.83 C </line>
<line>ATOM 12492 CA MET D 392 52.030 132.984 10.232 1.00 37.91 C </line>
<line>ATOM 12500 CA ARG D 393 48.349 132.941 9.244 1.00 32.04 C </line>
<line>ATOM 12511 CA THR D 394 49.019 130.621 6.310 1.00 46.99 C </line>
<line>ATOM 12518 CA ALA D 395 51.174 128.484 8.596 1.00 13.65 C </line>
<line>ATOM 12523 CA ALA D 396 48.309 128.189 11.084 1.00 25.55 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ALA THR ARG MET ASP VAL ASN TYR LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.94 8.89 11.81 13.57 11.00 11.18 8.36 5.74 3.81 </line>
<line>TYR CA 11.02 7.39 9.32 11.78 9.81 8.95 5.58 3.82 </line>
<line>ASN CA 12.10 8.42 9.72 11.42 8.79 7.19 3.81 </line>
<line>VAL CA 9.95 6.41 6.46 8.20 6.32 3.81 </line>
<line>ASP CA 8.74 6.27 5.30 5.35 3.82 </line>
<line>MET CA 6.13 4.86 5.48 3.81 </line>
<line>ARG CA 5.10 5.32 3.80 </line>
<line>THR CA 5.40 3.80 </line>
<line>ALA CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LYS CA 192</line>
<line>TYR CA 219</line>
<line>ASN CA 207</line>
<line>VAL CA 300</line>
<line>ASP CA 385</line>
<line>MET CA 444</line>
<line>ARG CA 516</line>
<line>THR CA 455</line>
<line>ALA CA 419</line>
<line>ALA CA 500</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AUP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AUPA</entryIDChain>
<sequence>RYGLGYNLVAGA</sequence>
<secondary-structure>H EEHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3045 CA ARG A 419 2.375 35.416 33.468 1.00 49.22 C </line>
<line>ATOM 3056 CA TYR A 420 1.389 37.668 30.605 1.00 59.67 C </line>
<line>ATOM 3068 CA GLY A 421 -0.166 40.240 32.979 1.00 86.76 C </line>
<line>ATOM 3072 CA LEU A 422 -3.872 39.777 32.108 1.00 45.74 C </line>
<line>ATOM 3080 CA GLY A 423 -5.163 38.931 35.533 1.00100.00 C </line>
<line>ATOM 3084 CA TYR A 424 -7.803 36.200 35.760 1.00 37.78 C </line>
<line>ATOM 3096 CA ASN A 425 -8.636 35.980 32.064 1.00 67.22 C </line>
<line>ATOM 3104 CA LEU A 426 -9.722 32.409 31.544 1.00 19.40 C </line>
<line>ATOM 3112 CA VAL A 427 -10.451 33.169 27.875 1.00 17.00 C </line>
<line>ATOM 3119 CA ALA A 428 -7.017 34.445 26.855 1.00 20.09 C </line>
<line>ATOM 3124 CA GLY A 429 -5.354 31.943 29.152 1.00 13.42 C </line>
<line>ATOM 3128 CA ALA A 430 -6.958 29.055 27.342 1.00 30.82 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLY ALA VAL LEU ASN TYR GLY LEU GLY TYR ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 12.85 9.51 11.53 14.17 12.61 11.11 10.46 8.57 7.74 5.47 3.77 </line>
<line>TYR CA 12.43 8.96 9.75 12.96 12.33 10.27 10.64 8.30 5.86 3.83 </line>
<line>GLY CA 14.25 10.51 10.86 13.48 12.44 9.53 9.08 5.76 3.84 </line>
<line>LEU CA 12.13 8.50 8.12 10.24 9.42 6.09 6.45 3.76 </line>
<line>GLY CA 12.96 9.46 9.94 10.95 8.90 5.73 3.81 </line>
<line>TYR CA 11.07 8.23 9.11 8.85 5.99 3.80 </line>
<line>ASN CA 8.55 5.96 5.67 5.36 3.77 </line>
<line>LEU CA 6.05 5.00 5.78 3.82 </line>
<line>VAL CA 5.42 5.40 3.80 </line>
<line>ALA CA 5.41 3.78 </line>
<line>GLY CA 3.77 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 207</line>
<line>TYR CA 237</line>
<line>GLY CA 175</line>
<line>LEU CA 249</line>
<line>GLY CA 237</line>
<line>TYR CA 333</line>
<line>ASN CA 409</line>
<line>LEU CA 491</line>
<line>VAL CA 537</line>
<line>ALA CA 448</line>
<line>GLY CA 425</line>
<line>ALA CA 515</line>
</n14>
</entryChain>
<parallel>
<x>58.191001892089844</x>
<y>94.072998046875</y>
<z>-24.454999923706055</z>
</parallel>
<rotation>
<x>0.6110000014305115</x>
<y>-0.7789999842643738</y>
<z>-0.1420000046491623</z>
<x>0.2809999883174896</x>
<y>0.38100001215934753</y>
<z>-0.8809999823570251</z>
<x>0.7400000095367432</x>
<y>0.49900001287460327</y>
<z>0.45100000500679016</z>
</rotation>
<rmsd>2.076401948928833</rmsd>
<dmax>4.325779914855957</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1AUP</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1AUPA</entryIDChain>
<sequence>KLAEL-GAKAV</sequence>
<secondary-structure>HHHHH- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1812 CA LYS A 248 -23.922 17.275 38.015 1.00 68.88 C </line>
<line>ATOM 1821 CA LEU A 249 -25.049 20.695 39.152 1.00 43.44 C </line>
<line>ATOM 1829 CA ALA A 250 -28.043 19.170 40.913 1.00 31.79 C </line>
<line>ATOM 1834 CA GLU A 251 -25.792 16.557 42.482 1.00 57.23 C </line>
<line>ATOM 1843 CA LEU A 252 -23.238 19.136 43.523 1.00 40.22 C </line>
<line>ATOM 1851 CA GLY A 253 -25.524 21.640 45.271 1.00 70.00 C </line>
<line>ATOM 1855 CA ALA A 254 -26.665 24.019 42.544 1.00100.00 C </line>
<line>ATOM 1860 CA LYS A 255 -29.801 23.627 40.428 1.00100.00 C </line>
<line>ATOM 1869 CA ALA A 256 -30.928 24.568 36.931 1.00 54.26 C </line>
<line>ATOM 1874 CA VAL A 257 -33.870 26.951 36.491 1.00 55.76 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ALA LYS ALA GLY LEU GLU ALA LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.96 10.17 8.99 8.57 8.62 5.85 4.90 5.38 3.78 </line>
<line>LEU CA 11.14 7.38 5.73 5.02 6.21 4.98 5.36 3.79 </line>
<line>ALA CA 10.68 7.30 4.82 5.30 5.61 5.47 3.79 </line>
<line>GLU CA 14.46 11.02 8.38 7.51 5.80 3.78 </line>
<line>LEU CA 14.95 11.49 8.53 6.05 3.81 </line>
<line>GLY CA 13.23 10.36 6.76 3.79 </line>
<line>ALA CA 9.86 7.07 3.80 </line>
<line>LYS CA 6.57 3.79 </line>
<line>ALA CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LYS CA 401</line>
<line>LEU CA 445</line>
<line>ALA CA 371</line>
<line>GLU CA 295</line>
<line>LEU CA 294</line>
<line>GLY CA 267</line>
<line>ALA CA 361</line>
<line>LYS CA 391</line>
<line>ALA CA 495</line>
<line>VAL CA 460</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B26</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B26D</entryIDChain>
<sequence>LISQELGSKVV</sequence>
<secondary-structure>HHH EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 11211 CA LEU D 227 45.601 141.666 31.418 1.00 74.84 C </line>
<line>ATOM 11219 CA ILE D 228 48.427 142.830 29.127 1.00 59.13 C </line>
<line>ATOM 11227 CA SER D 229 48.852 145.818 31.433 1.00 70.83 C </line>
<line>ATOM 11233 CA GLN D 230 48.718 144.024 34.791 1.00 83.46 C </line>
<line>ATOM 11242 CA GLU D 231 50.292 140.684 33.863 1.00 44.12 C </line>
<line>ATOM 11251 CA LEU D 232 52.743 141.776 31.147 1.00100.00 C </line>
<line>ATOM 11259 CA GLY D 233 53.481 145.327 32.256 1.00 25.00 C </line>
<line>ATOM 11263 CA SER D 234 53.034 146.718 28.754 1.00 60.24 C </line>
<line>ATOM 11269 CA LYS D 235 51.951 150.365 28.560 1.00 36.66 C </line>
<line>ATOM 11278 CA VAL D 236 48.420 150.566 27.144 1.00 69.36 C </line>
<line>ATOM 11285 CA VAL D 237 48.739 153.945 25.434 1.00 94.39 C </line>
</atom-coordinate>
<distance-map>
<line> VAL VAL LYS SER GLY LEU GLU GLN SER ILE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.02 10.27 11.14 9.37 8.73 7.15 5.38 5.16 5.27 3.82 </line>
<line>ILE CA 11.72 7.99 8.34 6.04 6.45 4.88 5.52 5.80 3.80 </line>
<line>SER CA 10.10 6.41 6.21 5.05 4.73 5.62 5.86 3.81 </line>
<line>GLN CA 13.64 10.07 9.46 7.89 5.55 5.88 3.81 </line>
<line>GLU CA 15.79 12.10 11.16 8.37 5.86 3.82 </line>
<line>LEU CA 14.03 10.58 9.01 5.50 3.79 </line>
<line>GLY CA 11.97 8.90 6.43 3.79 </line>
<line>SER CA 9.04 6.22 3.81 </line>
<line>LYS CA 5.74 3.81 </line>
<line>VAL CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 400</line>
<line>ILE CA 446</line>
<line>SER CA 385</line>
<line>GLN CA 279</line>
<line>GLU CA 294</line>
<line>LEU CA 302</line>
<line>GLY CA 277</line>
<line>SER CA 365</line>
<line>LYS CA 368</line>
<line>VAL CA 462</line>
<line>VAL CA 429</line>
</n14>
</entryChain>
<parallel>
<x>-76.04900360107422</x>
<y>-124.41400146484375</y>
<z>10.265999794006348</z>
</parallel>
<rotation>
<x>0.14000000059604645</x>
<y>0.6430000066757202</y>
<z>0.753000020980835</z>
<x>-0.984000027179718</x>
<y>0.17499999701976776</y>
<z>0.032999999821186066</z>
<x>-0.11100000143051147</x>
<y>-0.7450000047683716</y>
<z>0.6579999923706055</z>
</rotation>
<rmsd>1.0918430089950562</rmsd>
<dmax>1.7883249521255493</dmax>
</indel>