NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B2KA-2EQLA
confEVID 1B2KA-2EQLA
pdbIDA 1B2K
pdbIDB 2EQL
pdbChainA A
pdbChainB A
identity 0.484600007534027
indelSize 2
alignment <alignment>
<seq1>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNT-DGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq1>
<seq2>KVFSKCELAHKLKAQEMDGFGGYSLANWVCMAEYESNFNTRAFNGKNANGSSDYGLFQLNNKWWCKDN-KRSSSNACNIMCSKLLDENIDDDISCAKRVVRDPKGMSAWKAWVKHCKDKDLSEYLASCNL</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE - EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_1>
<ss_2> HHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EEEHHHEE - EEGGGG HHHHHHHHHH GGGG HHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B2KA</entryIDChain>
<sequence>TNRNT-DGSTD</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 335 CA THR A 43 -9.439 -1.071 14.851 1.00 18.47 C </line>
<line>ATOM 342 CA ASN A 44 -11.272 -3.787 12.961 1.00 22.72 C </line>
<line>ATOM 350 CA ARG A 45 -12.435 -6.937 14.737 1.00 28.83 C </line>
<line>ATOM 361 CA ASN A 46 -12.893 -9.885 12.389 1.00 31.54 C </line>
<line>ATOM 369 CA THR A 47 -15.409 -12.723 12.708 1.00 35.41 C </line>
<line>ATOM 376 CA ASP A 48 -12.559 -15.057 13.649 1.00 33.86 C </line>
<line>ATOM 384 CA GLY A 49 -11.496 -13.380 16.870 1.00 28.72 C </line>
<line>ATOM 388 CA SER A 50 -8.622 -11.500 15.244 1.00 22.29 C </line>
<line>ATOM 394 CA THR A 51 -8.189 -7.741 14.943 1.00 14.23 C </line>
<line>ATOM 401 CA ASP A 52 -6.648 -5.360 12.400 1.00 10.85 C </line>
</atom-coordinate>
<distance-map>
<line> ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 5.67 6.79 10.47 12.64 14.38 13.27 9.78 6.59 3.78 </line>
<line>ASN CA 4.92 5.39 8.47 10.36 11.36 9.85 6.34 3.80 </line>
<line>ARG CA 6.44 4.33 5.97 6.85 8.19 6.81 3.80 </line>
<line>ASN CA 7.71 5.77 5.39 5.85 5.33 3.81 </line>
<line>THR CA 11.45 9.05 7.35 5.75 3.80 </line>
<line>ASP CA 11.43 8.62 5.54 3.78 </line>
<line>GLY CA 10.38 6.82 3.80 </line>
<line>SER CA 7.05 3.80 </line>
<line>THR CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>THR CA 288</line>
<line>ASN CA 266</line>
<line>ARG CA 200</line>
<line>ASN CA 166</line>
<line>THR CA 106</line>
<line>ASP CA 128</line>
<line>GLY CA 163</line>
<line>SER CA 246</line>
<line>THR CA 300</line>
<line>ASP CA 376</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2EQL</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2EQLA</entryIDChain>
<sequence>FNGKNANGSSD</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 335 CA PHE A 43 25.234 8.318 23.711 1.00 14.36 C </line>
<line>ATOM 346 CA ASN A 44 22.283 7.911 26.048 1.00 16.73 C </line>
<line>ATOM 354 CA GLY A 45 22.429 9.093 29.616 1.00 23.71 C </line>
<line>ATOM 358 CA LYS A 46 19.671 8.472 32.130 1.00 25.81 C </line>
<line>ATOM 367 CA ASN A 47 20.123 9.524 35.869 1.00 25.39 C </line>
<line>ATOM 375 CA ALA A 48 18.097 6.843 37.771 1.00 31.18 C </line>
<line>ATOM 380 CA ASN A 49 21.584 6.481 39.115 1.00 22.87 C </line>
<line>ATOM 388 CA GLY A 50 24.540 7.958 36.880 1.00 19.24 C </line>
<line>ATOM 392 CA SER A 51 24.171 5.304 34.091 1.00 12.25 C </line>
<line>ATOM 398 CA SER A 52 24.954 6.028 30.456 1.00 5.93 C </line>
<line>ATOM 404 CA ASP A 53 25.349 4.034 27.258 1.00 7.84 C </line>
</atom-coordinate>
<distance-map>
<line> ASP SER SER GLY ASN ALA ASN LYS GLY ASN PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 5.56 7.13 10.86 13.19 15.94 15.84 13.24 10.09 6.58 3.79 </line>
<line>ASN CA 5.09 5.49 8.66 11.06 13.16 12.49 10.18 6.64 3.76 </line>
<line>GLY CA 6.30 4.06 6.12 7.65 9.89 9.50 6.68 3.78 </line>
<line>LYS CA 8.70 6.06 5.84 6.82 7.51 6.08 3.91 </line>
<line>ASN CA 11.47 8.05 6.11 4.79 4.68 3.86 </line>
<line>ALA CA 13.08 10.06 7.27 6.60 3.75 </line>
<line>ASN CA 12.68 9.30 5.77 3.99 </line>
<line>GLY CA 10.42 6.72 3.87 </line>
<line>SER CA 7.05 3.79 </line>
<line>SER CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>PHE CA 294</line>
<line>ASN CA 266</line>
<line>GLY CA 223</line>
<line>LYS CA 163</line>
<line>ASN CA 140</line>
<line>ALA CA 115</line>
<line>ASN CA 143</line>
<line>GLY CA 191</line>
<line>SER CA 245</line>
<line>SER CA 306</line>
<line>ASP CA 405</line>
</n14>
</entryChain>
<parallel>
<x>-34.27000045776367</x>
<y>-17.174999237060547</y>
<z>-18.006000518798828</z>
</parallel>
<rotation>
<x>0.43799999356269836</x>
<y>0.08399999886751175</y>
<z>0.8949999809265137</z>
<x>-0.8820000290870667</x>
<y>0.2329999953508377</y>
<z>0.4099999964237213</z>
<x>-0.17399999499320984</x>
<y>-0.968999981880188</y>
<z>0.17599999904632568</z>
</rotation>
<rmsd>0.8257269859313965</rmsd>
<dmax>1.461298942565918</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2EQL</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2EQLA</entryIDChain>
<sequence>WCKDN-KRSSS</sequence>
<secondary-structure>HEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 503 CA TRP A 64 31.916 -2.260 31.046 1.00 5.08 C </line>
<line>ATOM 517 CA CYS A 65 33.837 0.962 30.984 1.00 8.99 C </line>
<line>ATOM 523 CA LYS A 66 35.347 3.543 33.176 1.00 2.80 C </line>
<line>ATOM 532 CA ASP A 67 34.269 7.204 32.977 1.00 6.96 C </line>
<line>ATOM 540 CA ASN A 68 33.884 9.791 35.867 1.00 10.72 C </line>
<line>ATOM 548 CA LYS A 69 30.325 9.001 37.028 1.00 10.59 C </line>
<line>ATOM 557 CA ARG A 70 29.489 6.742 40.046 1.00 29.32 C </line>
<line>ATOM 568 CA SER A 71 27.965 3.997 38.060 1.00 22.73 C </line>
<line>ATOM 574 CA SER A 72 31.095 3.191 35.998 1.00 15.77 C </line>
<line>ATOM 580 CA SER A 73 33.191 -0.064 36.418 1.00 15.22 C </line>
</atom-coordinate>
<distance-map>
<line> SER SER SER ARG LYS ASN ASP LYS CYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 5.94 7.41 10.20 12.96 12.85 13.13 9.94 7.07 3.75 </line>
<line>CYS CA 5.57 6.13 9.68 11.59 10.65 10.09 6.57 3.71 </line>
<line>LYS CA 5.31 5.12 8.86 9.58 8.36 6.96 3.82 </line>
<line>ASP CA 8.11 5.94 8.71 8.55 5.93 3.90 </line>
<line>ASN CA 9.89 7.17 8.57 6.79 3.83 </line>
<line>LYS CA 9.53 5.95 5.63 3.86 </line>
<line>ARG CA 8.56 5.62 3.72 </line>
<line>SER CA 6.82 3.83 </line>
<line>SER CA 3.89 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>TRP CA 376</line>
<line>CYS CA 351</line>
<line>LYS CA 277</line>
<line>ASP CA 265</line>
<line>ASN CA 201</line>
<line>LYS CA 212</line>
<line>ARG CA 181</line>
<line>SER CA 227</line>
<line>SER CA 275</line>
<line>SER CA 257</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B2KA</entryIDChain>
<sequence>WCNDGRTPGSR</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 497 CA TRP A 63 2.229 -9.808 13.042 1.00 7.36 C </line>
<line>ATOM 511 CA CYS A 64 1.756 -8.783 16.732 1.00 7.95 C </line>
<line>ATOM 517 CA ASN A 65 1.234 -10.100 20.247 1.00 11.68 C </line>
<line>ATOM 525 CA ASP A 66 -2.244 -9.363 21.619 1.00 16.43 C </line>
<line>ATOM 533 CA GLY A 67 -1.571 -11.245 24.845 1.00 20.58 C </line>
<line>ATOM 537 CA ARG A 68 -3.473 -14.394 23.867 1.00 26.04 C </line>
<line>ATOM 548 CA THR A 69 -0.585 -16.495 22.542 1.00 23.08 C </line>
<line>ATOM 555 CA PRO A 70 2.788 -15.211 23.808 1.00 22.20 C </line>
<line>ATOM 562 CA GLY A 71 5.804 -16.881 22.244 1.00 20.34 C </line>
<line>ATOM 566 CA SER A 72 3.758 -17.671 19.154 1.00 18.20 C </line>
<line>ATOM 572 CA ARG A 73 3.998 -15.896 15.789 1.00 15.26 C </line>
</atom-coordinate>
<distance-map>
<line> ARG SER GLY PRO THR ARG GLY ASP ASN CYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 6.91 10.08 12.14 12.06 11.95 13.07 12.48 9.68 7.28 3.86 </line>
<line>CYS CA 7.52 9.43 10.60 9.62 9.94 10.48 9.11 6.34 3.79 </line>
<line>ASN CA 7.82 8.06 8.42 6.42 7.03 7.33 5.51 3.81 </line>
<line>ASP CA 10.75 10.54 11.03 8.02 7.38 5.65 3.79 </line>
<line>GLY CA 11.60 10.10 9.64 5.98 5.82 3.81 </line>
<line>ARG CA 11.11 9.23 9.74 6.31 3.81 </line>
<line>THR CA 8.18 5.63 6.41 3.82 </line>
<line>PRO CA 8.14 5.35 3.79 </line>
<line>GLY CA 6.77 3.79 </line>
<line>SER CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>TRP CA 376</line>
<line>CYS CA 346</line>
<line>ASN CA 267</line>
<line>ASP CA 277</line>
<line>GLY CA 179</line>
<line>ARG CA 167</line>
<line>THR CA 173</line>
<line>PRO CA 154</line>
<line>GLY CA 143</line>
<line>SER CA 165</line>
<line>ARG CA 213</line>
</n14>
</entryChain>
<parallel>
<x>30.952999114990234</x>
<y>17.107999801635742</y>
<z>14.262999534606934</z>
</parallel>
<rotation>
<x>-0.05999999865889549</x>
<y>-0.7179999947547913</y>
<z>0.6930000185966492</z>
<x>0.9430000185966492</x>
<y>-0.2680000066757202</y>
<z>-0.19699999690055847</z>
<x>0.3269999921321869</x>
<y>0.6420000195503235</y>
<z>0.6930000185966492</z>
</rotation>
<rmsd>1.5268709659576416</rmsd>
<dmax>2.0829319953918457</dmax>
</indel>