NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B2KA-2G4NF
confEVID 1B2KA-2G4NF
pdbIDA 1B2K
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.354299992322922
indelSize 3
alignment <alignment>
<seq1>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN-DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILD-KVGINYWLAHKALCSEK-LDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE - EEEEE EE GGGG HHHHHHHHHHHH- GGG HHHH -GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN-DSTEY</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B2KA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 335 CA THR A 43 -9.439 -1.071 14.851 1.00 18.47 C </line>
<line>ATOM 342 CA ASN A 44 -11.272 -3.787 12.961 1.00 22.72 C </line>
<line>ATOM 350 CA ARG A 45 -12.435 -6.937 14.737 1.00 28.83 C </line>
<line>ATOM 361 CA ASN A 46 -12.893 -9.885 12.389 1.00 31.54 C </line>
<line>ATOM 369 CA THR A 47 -15.409 -12.723 12.708 1.00 35.41 C </line>
<line>ATOM 376 CA ASP A 48 -12.559 -15.057 13.649 1.00 33.86 C </line>
<line>ATOM 384 CA GLY A 49 -11.496 -13.380 16.870 1.00 28.72 C </line>
<line>ATOM 388 CA SER A 50 -8.622 -11.500 15.244 1.00 22.29 C </line>
<line>ATOM 394 CA THR A 51 -8.189 -7.741 14.943 1.00 14.23 C </line>
<line>ATOM 401 CA ASP A 52 -6.648 -5.360 12.400 1.00 10.85 C </line>
<line>ATOM 409 CA TYR A 53 -4.811 -2.516 14.101 1.00 8.49 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.91 5.67 6.79 10.47 12.64 14.38 13.27 9.78 6.59 3.78 </line>
<line>ASN CA 6.68 4.92 5.39 8.47 10.36 11.36 9.85 6.34 3.80 </line>
<line>ARG CA 8.84 6.44 4.33 5.97 6.85 8.19 6.81 3.80 </line>
<line>ASN CA 11.07 7.71 5.77 5.39 5.85 5.33 3.81 </line>
<line>THR CA 14.78 11.45 9.05 7.35 5.75 3.80 </line>
<line>ASP CA 14.75 11.43 8.62 5.54 3.78 </line>
<line>GLY CA 13.05 10.38 6.82 3.80 </line>
<line>SER CA 9.83 7.05 3.80 </line>
<line>THR CA 6.28 3.81 </line>
<line>ASP CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 288</line>
<line>ASN CA 266</line>
<line>ARG CA 200</line>
<line>ASN CA 166</line>
<line>THR CA 106</line>
<line>ASP CA 128</line>
<line>GLY CA 163</line>
<line>SER CA 246</line>
<line>THR CA 300</line>
<line>ASP CA 376</line>
<line>TYR CA 416</line>
</n14>
</entryChain>
<parallel>
<x>70.0979995727539</x>
<y>23.87299919128418</y>
<z>103.66500091552734</z>
</parallel>
<rotation>
<x>-0.9710000157356262</x>
<y>-0.13600000739097595</y>
<z>0.19499999284744263</z>
<x>-0.23499999940395355</x>
<y>0.6779999732971191</y>
<z>-0.6959999799728394</z>
<x>-0.03799999877810478</x>
<y>-0.722000002861023</y>
<z>-0.6909999847412109</z>
</rotation>
<rmsd>1.0543869733810425</rmsd>
<dmax>1.955286979675293</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KKILD-KVGIN</sequence>
<secondary-structure>HHHHH- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 5621 CA LYS F 93 37.237 17.355 121.601 1.00 39.21 C </line>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE GLY VAL LYS ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.85 9.70 8.78 10.10 8.64 6.08 5.20 5.33 3.82 </line>
<line>LYS CA 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 7.11 7.02 3.86 </line>
<line>GLY CA 5.57 3.81 </line>
<line>ILE CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 349</line>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B2KA</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 733 CA LYS A 96 8.156 -3.234 5.992 1.00 8.79 C </line>
<line>ATOM 742 CA LYS A 97 8.249 -6.858 7.134 1.00 10.22 C </line>
<line>ATOM 751 CA ILE A 98 4.765 -7.556 5.819 1.00 8.57 C </line>
<line>ATOM 759 CA VAL A 99 5.531 -6.119 2.387 1.00 10.43 C </line>
<line>ATOM 766 CA SER A 100 8.689 -8.256 2.217 1.00 12.36 C </line>
<line>ATOM 772 CA ASP A 101 6.750 -11.408 3.127 1.00 13.71 C </line>
<line>ATOM 780 CA GLY A 102 6.149 -12.463 -0.472 1.00 13.84 C </line>
<line>ATOM 784 CA ASN A 103 2.832 -10.853 -1.407 1.00 13.34 C </line>
<line>ATOM 792 CA GLY A 104 3.973 -7.260 -1.779 1.00 9.79 C </line>
<line>ATOM 796 CA MET A 105 1.279 -4.738 -0.921 1.00 8.74 C </line>
<line>ATOM 804 CA ASN A 106 -1.398 -7.242 -1.889 1.00 9.72 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.02 9.87 9.70 11.88 11.44 8.77 6.31 5.31 5.50 3.80 </line>
<line>LYS CA 13.21 10.86 9.89 10.87 9.68 6.25 5.13 5.52 3.79 </line>
<line>ILE CA 9.87 8.09 7.64 8.17 8.10 5.10 5.37 3.80 </line>
<line>VAL CA 8.22 5.56 4.59 6.64 6.99 5.48 3.82 </line>
<line>SER CA 10.94 8.78 6.26 7.36 5.60 3.81 </line>
<line>ASP CA 10.44 9.53 7.00 6.02 3.80 </line>
<line>GLY CA 9.29 9.14 5.79 3.80 </line>
<line>ASN CA 5.58 6.33 3.79 </line>
<line>GLY CA 5.37 3.79 </line>
<line>MET CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 371</line>
<line>LYS CA 318</line>
<line>ILE CA 381</line>
<line>VAL CA 352</line>
<line>SER CA 244</line>
<line>ASP CA 232</line>
<line>GLY CA 181</line>
<line>ASN CA 213</line>
<line>GLY CA 285</line>
<line>MET CA 376</line>
<line>ASN CA 294</line>
</n14>
</entryChain>
<parallel>
<x>33.70899963378906</x>
<y>23.836999893188477</y>
<z>123.75199890136719</z>
</parallel>
<rotation>
<x>-0.9539999961853027</x>
<y>-0.296999990940094</y>
<z>0.028999999165534973</z>
<x>-0.28200000524520874</x>
<y>0.8650000095367432</y>
<z>-0.41600000858306885</z>
<x>0.0989999994635582</x>
<y>-0.4050000011920929</y>
<z>-0.9089999794960022</z>
</rotation>
<rmsd>1.2497719526290894</rmsd>
<dmax>2.298882007598877</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>LCSEK-LDQWL</sequence>
<secondary-structure> -GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
<line>ATOM 5839 CA LEU F 119 39.177 39.086 118.690 1.00 43.75 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TRP GLN ASP LEU LYS GLU SER CYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.93 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 12.41 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 14.01 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 13.07 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 10.75 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 7.42 5.66 5.44 3.81 </line>
<line>ASP CA 5.57 5.39 3.86 </line>
<line>GLN CA 5.66 3.83 </line>
<line>TRP CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
<line>LEU CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B2KA</entryIDChain>
<sequence>RCKGTDVQAWI</sequence>
<secondary-structure> GGGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 879 CA ARG A 114 -8.779 0.884 -4.360 1.00 13.04 C </line>
<line>ATOM 890 CA CYS A 115 -5.117 1.661 -5.022 1.00 9.59 C </line>
<line>ATOM 896 CA LYS A 116 -3.721 -1.045 -7.264 1.00 10.48 C </line>
<line>ATOM 905 CA GLY A 117 -3.806 -0.132 -10.945 1.00 11.49 C </line>
<line>ATOM 909 CA THR A 118 -4.284 3.585 -10.340 1.00 12.37 C </line>
<line>ATOM 916 CA ASP A 119 -1.991 6.605 -10.518 1.00 13.31 C </line>
<line>ATOM 924 CA VAL A 120 -0.991 6.670 -6.859 1.00 12.52 C </line>
<line>ATOM 931 CA GLN A 121 1.125 9.757 -7.559 1.00 12.92 C </line>
<line>ATOM 940 CA ALA A 122 -2.106 11.666 -6.982 1.00 10.85 C </line>
<line>ATOM 945 CA TRP A 123 -1.815 10.906 -3.266 1.00 11.73 C </line>
<line>ATOM 959 CA ILE A 124 1.300 13.036 -2.859 1.00 12.89 C </line>
</atom-coordinate>
<distance-map>
<line> ILE TRP ALA GLN VAL ASP THR GLY LYS CYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 15.86 12.25 12.95 13.68 10.02 10.80 7.95 8.31 6.14 3.80 </line>
<line>CYS CA 13.24 9.97 10.63 10.53 6.74 8.03 5.72 6.33 3.78 </line>
<line>LYS CA 15.58 12.75 12.82 11.84 8.19 8.49 5.59 3.79 </line>
<line>GLY CA 16.27 13.59 12.56 11.56 8.42 6.99 3.80 </line>
<line>THR CA 13.28 10.48 9.02 8.67 5.70 3.80 </line>
<line>ASP CA 10.53 8.43 6.17 5.33 3.79 </line>
<line>VAL CA 7.86 5.62 5.12 3.81 </line>
<line>GLN CA 5.73 5.33 3.80 </line>
<line>ALA CA 5.52 3.80 </line>
<line>TRP CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ARG CA 244</line>
<line>CYS CA 306</line>
<line>LYS CA 267</line>
<line>GLY CA 191</line>
<line>THR CA 208</line>
<line>ASP CA 204</line>
<line>VAL CA 301</line>
<line>GLN CA 267</line>
<line>ALA CA 233</line>
<line>TRP CA 322</line>
<line>ILE CA 289</line>
</n14>
</entryChain>
<parallel>
<x>47.49300003051758</x>
<y>32.75899887084961</y>
<z>134.2729949951172</z>
</parallel>
<rotation>
<x>-0.996999979019165</x>
<y>-0.0010000000474974513</y>
<z>-0.07400000095367432</z>
<x>0.050999999046325684</x>
<y>0.7149999737739563</y>
<z>-0.6970000267028809</z>
<x>0.05400000140070915</x>
<y>-0.6990000009536743</y>
<z>-0.7129999995231628</z>
</rotation>
<rmsd>1.1911840438842773</rmsd>
<dmax>1.8492679595947266</dmax>
</indel>