NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B2KB-2G4NF
confEVID 1B2KB-2G4NF
pdbIDA 1B2K
pdbIDB 2G4N
pdbChainA B
pdbChainB F
identity 0.354299992322922
indelSize 3
alignment <alignment>
<seq1>KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN-DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILD-KVGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHH GGGG HHHHH GGGGG </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE - EEEEE EE GGGG HHHHHHHHHHHH- GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN-DSTEY</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B2KB</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1344 CA THR B 43 6.765 1.983 44.805 1.00 19.98 C </line>
<line>ATOM 1351 CA ASN B 44 4.008 -0.260 43.494 1.00 23.80 C </line>
<line>ATOM 1359 CA ARG B 45 2.598 -3.260 45.337 1.00 27.89 C </line>
<line>ATOM 1370 CA ASN B 46 1.859 -6.343 43.245 1.00 31.42 C </line>
<line>ATOM 1378 CA THR B 47 -1.019 -8.742 43.909 1.00 31.90 C </line>
<line>ATOM 1385 CA ASP B 48 1.598 -11.476 44.283 1.00 31.43 C </line>
<line>ATOM 1393 CA GLY B 49 3.001 -10.076 47.519 1.00 29.08 C </line>
<line>ATOM 1397 CA SER B 50 5.994 -8.502 45.783 1.00 24.19 C </line>
<line>ATOM 1403 CA THR B 51 6.715 -4.812 45.290 1.00 18.73 C </line>
<line>ATOM 1410 CA ASP B 52 8.405 -2.767 42.558 1.00 13.16 C </line>
<line>ATOM 1418 CA TYR B 53 10.887 -0.192 43.808 1.00 10.67 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.77 5.50 6.81 10.56 12.92 14.43 13.28 9.79 6.72 3.79 </line>
<line>ASN CA 6.89 5.15 5.59 8.78 10.66 11.50 9.87 6.46 3.79 </line>
<line>ARG CA 8.97 6.46 4.40 6.26 7.17 8.34 6.72 3.80 </line>
<line>ASN CA 10.94 7.49 5.49 5.31 5.79 5.24 3.81 </line>
<line>THR CA 14.66 11.24 8.78 7.26 5.57 3.80 </line>
<line>ASP CA 14.62 11.19 8.46 5.52 3.79 </line>
<line>GLY CA 13.18 10.36 6.82 3.80 </line>
<line>SER CA 9.84 7.01 3.79 </line>
<line>THR CA 6.40 3.81 </line>
<line>ASP CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 302</line>
<line>ASN CA 277</line>
<line>ARG CA 222</line>
<line>ASN CA 209</line>
<line>THR CA 139</line>
<line>ASP CA 164</line>
<line>GLY CA 191</line>
<line>SER CA 260</line>
<line>THR CA 322</line>
<line>ASP CA 409</line>
<line>TYR CA 433</line>
</n14>
</entryChain>
<parallel>
<x>55.138999938964844</x>
<y>20.496999740600586</y>
<z>73.08000183105469</z>
</parallel>
<rotation>
<x>-0.9929999709129333</x>
<y>-0.11599999666213989</y>
<z>0.027000000700354576</z>
<x>-0.0989999994635582</x>
<y>0.675000011920929</y>
<z>-0.7310000061988831</z>
<x>0.06700000166893005</x>
<y>-0.7289999723434448</y>
<z>-0.6819999814033508</z>
</rotation>
<rmsd>0.993552029132843</rmsd>
<dmax>1.856387972831726</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KKILD-KVGIN</sequence>
<secondary-structure>HHHHH- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 5621 CA LYS F 93 37.237 17.355 121.601 1.00 39.21 C </line>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE GLY VAL LYS ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.85 9.70 8.78 10.10 8.64 6.08 5.20 5.33 3.82 </line>
<line>LYS CA 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 7.11 7.02 3.86 </line>
<line>GLY CA 5.57 3.81 </line>
<line>ILE CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 349</line>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B2KB</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1742 CA LYS B 96 22.115 -3.919 33.964 1.00 8.32 C </line>
<line>ATOM 1751 CA LYS B 97 21.810 -7.377 35.483 1.00 9.29 C </line>
<line>ATOM 1760 CA ILE B 98 18.085 -7.611 34.762 1.00 8.33 C </line>
<line>ATOM 1768 CA VAL B 99 18.385 -6.564 31.101 1.00 8.46 C </line>
<line>ATOM 1775 CA SER B 100 21.033 -9.270 30.686 1.00 10.20 C </line>
<line>ATOM 1781 CA ASP B 101 18.811 -11.966 32.239 1.00 10.38 C </line>
<line>ATOM 1789 CA GLY B 102 17.468 -13.372 28.968 1.00 10.41 C </line>
<line>ATOM 1793 CA ASN B 103 14.483 -11.146 28.143 1.00 9.64 C </line>
<line>ATOM 1801 CA GLY B 104 16.117 -7.854 27.247 1.00 7.58 C </line>
<line>ATOM 1805 CA MET B 105 14.028 -4.868 28.299 1.00 6.80 C </line>
<line>ATOM 1813 CA ASN B 106 10.829 -6.905 28.126 1.00 10.01 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.05 9.92 9.83 12.02 11.66 8.87 6.37 5.39 5.52 3.79 </line>
<line>LYS CA 13.23 10.88 10.02 11.03 9.86 6.37 5.22 5.62 3.80 </line>
<line>ILE CA 9.86 8.11 7.77 8.32 8.19 5.09 5.30 3.82 </line>
<line>VAL CA 8.13 5.45 4.65 6.71 7.19 5.54 3.81 </line>
<line>SER CA 10.78 8.61 6.16 7.27 5.70 3.82 </line>
<line>ASP CA 10.31 9.42 7.01 6.02 3.81 </line>
<line>GLY CA 9.31 9.20 5.94 3.81 </line>
<line>ASN CA 5.60 6.30 3.78 </line>
<line>GLY CA 5.44 3.79 </line>
<line>MET CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 370</line>
<line>LYS CA 319</line>
<line>ILE CA 378</line>
<line>VAL CA 355</line>
<line>SER CA 248</line>
<line>ASP CA 237</line>
<line>GLY CA 187</line>
<line>ASN CA 214</line>
<line>GLY CA 279</line>
<line>MET CA 380</line>
<line>ASN CA 301</line>
</n14>
</entryChain>
<parallel>
<x>21.065000534057617</x>
<y>24.402000427246094</y>
<z>94.94400024414062</z>
</parallel>
<rotation>
<x>-0.9599999785423279</x>
<y>-0.20999999344348907</y>
<z>-0.18400000035762787</z>
<x>-0.09399999678134918</x>
<y>0.8640000224113464</y>
<z>-0.49399998784065247</z>
<x>0.2630000114440918</x>
<y>-0.4569999873638153</y>
<z>-0.8500000238418579</z>
</rotation>
<rmsd>1.3118079900741577</rmsd>
<dmax>2.3795580863952637</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B2K</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B2KB</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1880 CA ASN B 113 3.637 -1.575 26.529 1.00 10.02 C </line>
<line>ATOM 1888 CA ARG B 114 4.606 2.047 25.884 1.00 9.81 C </line>
<line>ATOM 1899 CA CYS B 115 8.159 2.243 24.541 1.00 9.06 C </line>
<line>ATOM 1905 CA LYS B 116 8.940 -0.928 22.627 1.00 9.01 C </line>
<line>ATOM 1914 CA GLY B 117 8.718 -0.368 18.883 1.00 10.91 C </line>
<line>ATOM 1918 CA THR B 118 8.288 3.401 19.125 1.00 10.14 C </line>
<line>ATOM 1925 CA ASP B 119 10.577 6.304 18.236 1.00 12.80 C </line>
<line>ATOM 1933 CA VAL B 120 12.337 6.256 21.622 1.00 14.46 C </line>
<line>ATOM 1940 CA GLN B 121 14.949 8.715 20.382 1.00 17.89 C </line>
<line>ATOM 1949 CA ALA B 122 12.311 11.353 21.120 1.00 15.18 C </line>
<line>ATOM 1954 CA TRP B 123 12.944 10.911 24.857 1.00 13.60 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.66 16.48 16.48 12.69 13.38 10.06 9.26 6.62 6.24 3.80 </line>
<line>ARG CA 12.21 12.99 13.48 9.78 10.60 7.82 8.47 6.18 3.80 </line>
<line>CYS CA 9.91 10.58 10.26 6.49 7.88 5.54 6.26 3.79 </line>
<line>LYS CA 12.70 12.82 11.58 8.01 8.62 5.61 3.79 </line>
<line>GLY CA 13.44 12.46 11.12 8.03 6.96 3.80 </line>
<line>THR CA 10.53 9.13 8.61 5.55 3.80 </line>
<line>ASP CA 8.41 6.07 5.43 3.82 </line>
<line>VAL CA 5.70 5.12 3.80 </line>
<line>GLN CA 5.37 3.80 </line>
<line>ALA CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 208</line>
<line>ARG CA 252</line>
<line>CYS CA 303</line>
<line>LYS CA 270</line>
<line>GLY CA 198</line>
<line>THR CA 214</line>
<line>ASP CA 197</line>
<line>VAL CA 302</line>
<line>GLN CA 262</line>
<line>ALA CA 227</line>
<line>TRP CA 325</line>
</n14>
</entryChain>
<parallel>
<x>35.917999267578125</x>
<y>32.70199966430664</y>
<z>105.61399841308594</z>
</parallel>
<rotation>
<x>-0.9570000171661377</x>
<y>-0.035999998450279236</y>
<z>-0.289000004529953</z>
<x>0.18799999356269836</x>
<y>0.6830000281333923</y>
<z>-0.7059999704360962</z>
<x>0.22300000488758087</x>
<y>-0.7300000190734863</y>
<z>-0.6470000147819519</z>
</rotation>
<rmsd>1.1860250234603882</rmsd>
<dmax>2.116029977798462</dmax>
</indel>