NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B4WA-2NOTA
confEVID 1B4WA-2NOTA
pdbIDA 1B4W
pdbIDB 2NOT
pdbChainA A
pdbChainB A
identity 0.327899992465973
indelSize 2
alignment <alignment>
<seq1>HLLQFRKMIKKMTG--KEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVTG--CDPKWDDYTYSWKNGTIVCGG-DDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ-----</seq2>
<ss_1> HHHHHHHHHHH -- HHHHHHHHHHHHHHH -- EEEEEGG - HHHHHHHHHHHHHHHHH GGG GGG </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B4WA</entryIDChain>
<sequence>IVCGG-DDPCK</sequence>
<secondary-structure> - H</secondary-structure>
<atom-coordinate>
<line>ATOM 578 CA ILE A 82 38.058 -3.586 -8.199 1.00 39.17 C </line>
<line>ATOM 586 CA VAL A 83 34.954 -3.457 -10.367 1.00 26.04 C </line>
<line>ATOM 593 CA CYS A 84 31.539 -3.861 -8.808 1.00 19.47 C </line>
<line>ATOM 599 CA GLY A 85 28.837 -5.513 -10.898 1.00 19.75 C </line>
<line>ATOM 603 CA GLY A 86 25.453 -7.193 -10.617 1.00 26.91 C </line>
<line>ATOM 607 CA ASP A 88 21.876 -6.079 -11.308 1.00 29.52 C </line>
<line>ATOM 615 CA ASP A 89 21.178 -5.403 -7.638 1.00 25.61 C </line>
<line>ATOM 623 CA PRO A 90 21.709 -1.661 -6.980 1.00 19.59 C </line>
<line>ATOM 630 CA CYS A 91 21.788 -2.211 -3.227 1.00 16.95 C </line>
<line>ATOM 636 CA LYS A 92 24.495 -4.875 -3.129 1.00 16.21 C </line>
</atom-coordinate>
<distance-map>
<line> LYS CYS PRO ASP ASP GLY GLY CYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.54 17.07 16.51 16.99 16.67 13.33 9.80 6.55 3.79 </line>
<line>VAL CA 12.80 15.03 13.79 14.18 13.37 10.21 6.48 3.78 </line>
<line>CYS CA 9.10 11.36 10.24 10.54 10.22 7.17 3.79 </line>
<line>GLY CA 8.92 10.93 9.00 8.32 7.00 3.79 </line>
<line>GLY CA 7.90 9.64 7.61 5.51 3.81 </line>
<line>ASP CA 8.67 8.96 6.19 3.80 </line>
<line>ASP CA 5.62 5.48 3.84 </line>
<line>PRO CA 5.74 3.79 </line>
<line>CYS CA 3.80 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ILE CA 293</line>
<line>VAL CA 253</line>
<line>CYS CA 291</line>
<line>GLY CA 217</line>
<line>GLY CA 175</line>
<line>ASP CA 137</line>
<line>ASP CA 181</line>
<line>PRO CA 196</line>
<line>CYS CA 242</line>
<line>LYS CA 304</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>PYCRNIKKKCL</sequence>
<secondary-structure>EE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
<line>ATOM 677 CA LEU A 92 0.513 17.277 30.127 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> LEU CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 14.83 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 12.64 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 9.16 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 9.40 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 6.67 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 8.69 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.81 8.92 5.46 3.84 </line>
<line>LYS CA 5.71 5.98 3.82 </line>
<line>LYS CA 5.47 3.84 </line>
<line>CYS CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
<line>LEU CA 315</line>
</n14>
</entryChain>
<parallel>
<x>22.285999298095703</x>
<y>-23.406999588012695</y>
<z>-35.69599914550781</z>
</parallel>
<rotation>
<x>0.7179999947547913</x>
<y>0.4429999887943268</y>
<z>-0.5360000133514404</z>
<x>-0.6690000295639038</x>
<y>0.22699999809265137</y>
<z>-0.7080000042915344</z>
<x>-0.19200000166893005</x>
<y>0.8669999837875366</y>
<z>0.46000000834465027</z>
</rotation>
<rmsd>1.1297509670257568</rmsd>
<dmax>1.6438169479370117</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B4WA</entryIDChain>
<sequence>CFRDNLKTYKKR</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 731 CA CYS A 105 41.327 4.858 1.016 1.00 14.92 C </line>
<line>ATOM 737 CA PHE A 106 43.521 2.588 3.127 1.00 12.33 C </line>
<line>ATOM 748 CA ARG A 107 45.969 2.193 0.245 1.00 22.49 C </line>
<line>ATOM 759 CA ASP A 108 46.366 5.929 -0.339 1.00 19.60 C </line>
<line>ATOM 767 CA ASN A 109 47.008 6.669 3.344 1.00 14.59 C </line>
<line>ATOM 775 CA LEU A 110 49.205 3.646 4.091 1.00 12.85 C </line>
<line>ATOM 783 CA LYS A 111 52.048 6.161 4.474 1.00 13.52 C </line>
<line>ATOM 792 CA THR A 112 50.397 7.683 7.571 1.00 22.39 C </line>
<line>ATOM 799 CA TYR A 113 49.441 4.331 9.133 1.00 20.05 C </line>
<line>ATOM 811 CA LYS A 114 50.415 4.299 12.840 1.00 19.30 C </line>
<line>ATOM 820 CA LYS A 115 50.832 1.033 14.754 1.00 27.59 C </line>
<line>ATOM 829 CA ARG A 116 50.035 2.861 17.977 1.00 28.65 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LYS LYS TYR THR LYS LEU ASN ASP ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.17 17.14 14.92 11.49 11.54 11.34 8.54 6.40 5.33 5.41 3.80 </line>
<line>PHE CA 16.22 13.82 12.03 8.61 9.64 9.34 5.86 5.37 5.59 3.80 </line>
<line>ARG CA 18.20 15.35 13.52 9.78 10.17 8.40 5.23 5.54 3.80 </line>
<line>ASP CA 18.93 16.48 13.88 10.09 9.05 7.45 5.74 3.81 </line>
<line>ASN CA 15.42 13.29 10.36 6.70 5.51 5.19 3.81 </line>
<line>LEU CA 13.93 11.10 8.86 5.09 5.46 3.82 </line>
<line>LYS CA 14.05 11.55 8.72 5.64 3.83 </line>
<line>THR CA 11.47 9.80 6.26 3.82 </line>
<line>TYR CA 8.98 6.66 3.83 </line>
<line>LYS CA 5.35 3.81 </line>
<line>LYS CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>CYS CA 359</line>
<line>PHE CA 404</line>
<line>ARG CA 309</line>
<line>ASP CA 237</line>
<line>ASN CA 270</line>
<line>LEU CA 282</line>
<line>LYS CA 198</line>
<line>THR CA 226</line>
<line>TYR CA 299</line>
<line>LYS CA 257</line>
<line>LYS CA 242</line>
<line>ARG CA 212</line>
</n14>
</entryChain>
<parallel>
<x>-26.476999282836914</x>
<y>-1.3329999446868896</y>
<z>33.32099914550781</z>
</parallel>
<rotation>
<x>0.7480000257492065</x>
<y>-0.6029999852180481</y>
<z>-0.27799999713897705</z>
<x>0.6380000114440918</x>
<y>0.5370000004768372</y>
<z>0.5509999990463257</z>
<x>-0.18299999833106995</x>
<y>-0.5889999866485596</y>
<z>0.7870000004768372</z>
</rotation>
<rmsd>0.871038019657135</rmsd>
<dmax>1.7953380346298218</dmax>
</indel>