NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B4WB-2NOTA
confEVID 1B4WB-2NOTA
pdbIDA 1B4W
pdbIDB 2NOT
pdbChainA B
pdbChainB A
identity 0.327899992465973
indelSize 2
alignment <alignment>
<seq1>HLLQFRKMIKKMTG--KEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVTG--CDPKWDDYTYSWKNGTIVCGG-DDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ-----</seq2>
<ss_1> HHHHHHHHHHH -- HHHHHHHHHHHHHHH -- EEEEEGG - HHHHHHHHHHHHHHHHH GGG GGG </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B4WB</entryIDChain>
<sequence>IVCGG-DDPCK</sequence>
<secondary-structure> - H</secondary-structure>
<atom-coordinate>
<line>ATOM 1543 CA ILE B 82 50.326 1.857 51.046 1.00 34.26 C </line>
<line>ATOM 1551 CA VAL B 83 49.442 -0.291 54.036 1.00 25.22 C </line>
<line>ATOM 1558 CA CYS B 84 47.084 -3.230 53.636 1.00 20.87 C </line>
<line>ATOM 1564 CA GLY B 85 44.876 -4.123 56.590 1.00 20.87 C </line>
<line>ATOM 1568 CA GLY B 86 41.760 -6.059 57.518 1.00 23.93 C </line>
<line>ATOM 1572 CA ASP B 88 41.157 -9.431 59.147 1.00 32.34 C </line>
<line>ATOM 1580 CA ASP B 89 40.526 -11.161 55.833 1.00 30.55 C </line>
<line>ATOM 1588 CA PRO B 90 43.771 -12.841 54.717 1.00 25.00 C </line>
<line>ATOM 1595 CA CYS B 91 42.484 -13.296 51.172 1.00 21.78 C </line>
<line>ATOM 1601 CA LYS B 92 41.499 -9.682 50.478 1.00 20.40 C </line>
</atom-coordinate>
<distance-map>
<line> LYS CYS PRO ASP ASP GLY GLY CYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.54 17.06 16.51 16.98 16.65 13.34 9.81 6.56 3.79 </line>
<line>VAL CA 12.80 15.02 13.79 14.17 13.35 10.22 6.49 3.79 </line>
<line>CYS CA 9.10 11.34 10.22 10.52 10.20 7.17 3.79 </line>
<line>GLY CA 8.93 10.92 8.99 8.31 6.97 3.78 </line>
<line>GLY CA 7.92 9.65 7.61 5.51 3.79 </line>
<line>ASP CA 8.68 8.96 6.17 3.79 </line>
<line>ASP CA 5.64 5.49 3.82 </line>
<line>PRO CA 5.75 3.80 </line>
<line>CYS CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ILE CA 290</line>
<line>VAL CA 257</line>
<line>CYS CA 291</line>
<line>GLY CA 217</line>
<line>GLY CA 171</line>
<line>ASP CA 136</line>
<line>ASP CA 180</line>
<line>PRO CA 195</line>
<line>CYS CA 241</line>
<line>LYS CA 302</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>PYCRNIKKKCL</sequence>
<secondary-structure>EE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
<line>ATOM 677 CA LEU A 92 0.513 17.277 30.127 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> LEU CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 14.83 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 12.64 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 9.16 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 9.40 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 6.67 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 8.69 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.81 8.92 5.46 3.84 </line>
<line>LYS CA 5.71 5.98 3.82 </line>
<line>LYS CA 5.47 3.84 </line>
<line>CYS CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
<line>LEU CA 315</line>
</n14>
</entryChain>
<parallel>
<x>39.20399856567383</x>
<y>-24.472000122070312</y>
<z>28.97100067138672</z>
</parallel>
<rotation>
<x>0.8460000157356262</x>
<y>0.47099998593330383</y>
<z>0.24899999797344208</z>
<x>0.03500000014901161</x>
<y>-0.5170000195503235</y>
<z>0.8550000190734863</z>
<x>0.531000018119812</x>
<y>-0.7149999737739563</y>
<z>-0.45399999618530273</z>
</rotation>
<rmsd>1.1363580226898193</rmsd>
<dmax>1.6582900285720825</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1B4WB</entryIDChain>
<sequence>CFRDNLKTYKKR</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1696 CA CYS B 105 56.889 -1.915 40.575 1.00 33.83 C </line>
<line>ATOM 1702 CA PHE B 106 55.534 0.638 38.106 1.00 30.63 C </line>
<line>ATOM 1713 CA ARG B 107 57.050 3.477 40.114 1.00 36.02 C </line>
<line>ATOM 1724 CA ASP B 108 60.524 1.952 40.220 1.00 38.45 C </line>
<line>ATOM 1732 CA ASN B 109 60.589 1.284 36.479 1.00 38.73 C </line>
<line>ATOM 1740 CA LEU B 110 58.954 4.531 35.368 1.00 38.81 C </line>
<line>ATOM 1748 CA LYS B 111 62.336 5.468 33.902 1.00 46.52 C </line>
<line>ATOM 1757 CA THR B 112 62.101 2.634 31.355 1.00 45.30 C </line>
<line>ATOM 1764 CA TYR B 113 58.461 3.295 30.429 1.00 44.30 C </line>
<line>ATOM 1776 CA LYS B 114 58.028 3.307 26.641 1.00 44.72 C </line>
<line>ATOM 1785 CA LYS B 115 55.012 4.952 24.987 1.00 48.11 C </line>
<line>ATOM 1794 CA ARG B 116 55.436 2.640 22.009 1.00 53.63 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LYS LYS TYR THR LYS LEU ASN ASP ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.17 17.14 14.92 11.51 11.53 11.34 8.54 6.38 5.32 5.41 3.80 </line>
<line>PHE CA 16.22 13.82 12.03 8.64 9.63 9.34 5.86 5.35 5.58 3.79 </line>
<line>ARG CA 18.20 15.33 13.51 9.79 10.15 8.40 5.22 5.53 3.80 </line>
<line>ASP CA 18.92 16.48 13.87 10.10 9.03 7.45 5.71 3.80 </line>
<line>ASN CA 15.42 13.29 10.37 6.72 5.51 5.22 3.80 </line>
<line>LEU CA 13.94 11.11 8.86 5.12 5.44 3.80 </line>
<line>LYS CA 14.04 11.55 8.71 5.64 3.82 </line>
<line>THR CA 11.48 9.81 6.27 3.81 </line>
<line>TYR CA 8.97 6.65 3.81 </line>
<line>LYS CA 5.35 3.81 </line>
<line>LYS CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 402</line>
<line>ARG CA 310</line>
<line>ASP CA 238</line>
<line>ASN CA 270</line>
<line>LEU CA 283</line>
<line>LYS CA 198</line>
<line>THR CA 229</line>
<line>TYR CA 298</line>
<line>LYS CA 258</line>
<line>LYS CA 243</line>
<line>ARG CA 215</line>
</n14>
</entryChain>
<parallel>
<x>-38.319000244140625</x>
<y>1.6519999504089355</y>
<z>2.447999954223633</z>
</parallel>
<rotation>
<x>0.9419999718666077</x>
<y>0.30000001192092896</y>
<z>0.1469999998807907</z>
<x>0.3160000145435333</x>
<y>-0.652999997138977</y>
<z>-0.6890000104904175</z>
<x>-0.11100000143051147</x>
<y>0.6959999799728394</y>
<z>-0.7099999785423279</z>
</rotation>
<rmsd>0.8645899891853333</rmsd>
<dmax>1.780089020729065</dmax>
</indel>