NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B4WC-2NOTA
confEVID 1B4WC-2NOTA
pdbIDA 1B4W
pdbIDB 2NOT
pdbChainA C
pdbChainB A
identity 0.327899992465973
indelSize 2
alignment <alignment>
<seq1>HLLQFRKMIKKMTG--KEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVTG--CDPKWDDYTYSWKNGTIVCGG-DDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ-----</seq2>
<ss_1> HHHHHHHHHHH -- HHHHHHHHHHHHHHH -- EEEEEGG - HHHHHHHHHHHHHHHHH GGG GGG </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1B4WC</entryIDChain>
<sequence>IVCGG-DDPCK</sequence>
<secondary-structure> - H</secondary-structure>
<atom-coordinate>
<line>ATOM 2508 CA ILE C 82 43.089 -33.870 7.778 1.00 35.70 C </line>
<line>ATOM 2516 CA VAL C 83 46.372 -35.747 7.528 1.00 31.95 C </line>
<line>ATOM 2523 CA CYS C 84 49.569 -34.123 8.734 1.00 32.62 C </line>
<line>ATOM 2529 CA GLY C 85 52.781 -35.053 6.943 1.00 41.97 C </line>
<line>ATOM 2533 CA GLY C 86 56.352 -33.891 6.425 1.00 53.99 C </line>
<line>ATOM 2537 CA ASP C 88 59.706 -35.006 7.820 1.00 58.18 C </line>
<line>ATOM 2545 CA ASP C 89 59.804 -32.184 10.360 1.00 55.52 C </line>
<line>ATOM 2553 CA PRO C 90 58.503 -33.554 13.687 1.00 47.14 C </line>
<line>ATOM 2560 CA CYS C 91 58.037 -30.045 15.072 1.00 42.55 C </line>
<line>ATOM 2566 CA LYS C 92 55.878 -28.634 12.302 1.00 42.89 C </line>
</atom-coordinate>
<distance-map>
<line> LYS CYS PRO ASP ASP GLY GLY CYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.54 17.07 16.51 17.00 16.66 13.33 9.80 6.56 3.79 </line>
<line>VAL CA 12.80 15.02 13.78 14.18 13.36 10.21 6.47 3.78 </line>
<line>CYS CA 9.09 11.34 10.23 10.54 10.22 7.17 3.79 </line>
<line>GLY CA 8.92 10.90 8.97 8.32 6.98 3.79 </line>
<line>GLY CA 7.90 9.61 7.58 5.51 3.80 </line>
<line>ASP CA 8.68 8.94 6.16 3.80 </line>
<line>ASP CA 5.64 5.47 3.83 </line>
<line>PRO CA 5.75 3.80 </line>
<line>CYS CA 3.78 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ILE CA 288</line>
<line>VAL CA 254</line>
<line>CYS CA 295</line>
<line>GLY CA 219</line>
<line>GLY CA 169</line>
<line>ASP CA 137</line>
<line>ASP CA 179</line>
<line>PRO CA 192</line>
<line>CYS CA 243</line>
<line>LYS CA 303</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>PYCRNIKKKCL</sequence>
<secondary-structure>EE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
<line>ATOM 677 CA LEU A 92 0.513 17.277 30.127 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> LEU CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 14.83 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 12.64 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 9.16 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 9.40 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 6.67 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 8.69 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.81 8.92 5.46 3.84 </line>
<line>LYS CA 5.71 5.98 3.82 </line>
<line>LYS CA 5.47 3.84 </line>
<line>CYS CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
<line>LEU CA 315</line>
</n14>
</entryChain>
<parallel>
<x>47.608001708984375</x>
<y>-52.99100112915039</y>
<z>-17.684999465942383</z>
</parallel>
<rotation>
<x>-0.7129999995231628</x>
<y>-0.6990000009536743</y>
<z>-0.0560000017285347</z>
<x>0.699999988079071</x>
<y>-0.7139999866485596</y>
<z>-0.008999999612569809</z>
<x>-0.03400000184774399</x>
<y>-0.04600000008940697</y>
<z>0.9980000257492065</z>
</rotation>
<rmsd>1.1332759857177734</rmsd>
<dmax>1.6518900394439697</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1B4WC</entryIDChain>
<sequence>CFRDNLKTYKKR</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 2661 CA CYS C 105 37.145 -30.367 18.728 1.00 15.86 C </line>
<line>ATOM 2667 CA PHE C 106 35.155 -27.425 17.379 1.00 13.66 C </line>
<line>ATOM 2678 CA ARG C 107 33.227 -29.740 15.070 1.00 19.25 C </line>
<line>ATOM 2689 CA ASP C 108 32.232 -32.154 17.818 1.00 18.57 C </line>
<line>ATOM 2697 CA ASN C 109 31.021 -29.368 20.092 1.00 22.64 C </line>
<line>ATOM 2705 CA LEU C 110 29.304 -27.241 17.456 1.00 18.74 C </line>
<line>ATOM 2713 CA LYS C 111 26.026 -28.248 19.114 1.00 24.39 C </line>
<line>ATOM 2722 CA THR C 112 26.952 -26.343 22.290 1.00 16.63 C </line>
<line>ATOM 2729 CA TYR C 113 28.268 -23.245 20.473 1.00 14.87 C </line>
<line>ATOM 2741 CA LYS C 114 26.864 -20.068 22.056 1.00 15.45 C </line>
<line>ATOM 2750 CA LYS C 115 26.845 -16.752 20.200 1.00 17.10 C </line>
<line>ATOM 2759 CA ARG C 116 26.859 -14.901 23.497 1.00 10.66 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LYS LYS TYR THR LYS LEU ASN ASP ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.18 17.14 14.93 11.51 11.52 11.33 8.54 6.35 5.31 5.40 3.80 </line>
<line>PHE CA 16.22 13.82 12.03 8.63 9.62 9.33 5.85 5.31 5.58 3.80 </line>
<line>ARG CA 18.21 15.35 13.52 9.80 10.15 8.39 5.23 5.50 3.79 </line>
<line>ASP CA 18.94 16.49 13.89 10.11 9.04 7.45 5.73 3.79 </line>
<line>ASN CA 15.43 13.29 10.37 6.72 5.53 5.21 3.80 </line>
<line>LEU CA 13.96 11.12 8.86 5.11 5.45 3.81 </line>
<line>LYS CA 14.07 11.58 8.73 5.65 3.82 </line>
<line>THR CA 11.51 9.82 6.28 3.83 </line>
<line>TYR CA 8.99 6.65 3.82 </line>
<line>LYS CA 5.36 3.80 </line>
<line>LYS CA 3.78 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>CYS CA 362</line>
<line>PHE CA 399</line>
<line>ARG CA 310</line>
<line>ASP CA 237</line>
<line>ASN CA 271</line>
<line>LEU CA 279</line>
<line>LYS CA 198</line>
<line>THR CA 227</line>
<line>TYR CA 301</line>
<line>LYS CA 257</line>
<line>LYS CA 243</line>
<line>ARG CA 211</line>
</n14>
</entryChain>
<parallel>
<x>-11.029999732971191</x>
<y>30.825000762939453</y>
<z>18.700000762939453</z>
</parallel>
<rotation>
<x>-0.8220000267028809</x>
<y>0.5649999976158142</y>
<z>0.06599999964237213</z>
<x>-0.4970000088214874</x>
<y>-0.7699999809265137</y>
<z>0.4000000059604645</z>
<x>0.2770000100135803</x>
<y>0.29600000381469727</y>
<z>0.9139999747276306</z>
</rotation>
<rmsd>0.866690993309021</rmsd>
<dmax>1.7842669486999512</dmax>
</indel>