NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B4WD-2NOTA
confEVID 1B4WD-2NOTA
pdbIDA 1B4W
pdbIDB 2NOT
pdbChainA D
pdbChainB A
identity 0.327899992465973
indelSize 2
alignment <alignment>
<seq1>HLLQFRKMIKKMTG--KEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVTG--CDPKWDDYTYSWKNGTIVCGG-DDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ-----</seq2>
<ss_1> HHHHHHHHHHH -- HHHHHHHHHHHHHHH -- EEEEEGG - HHHHHHHHHHHHHHHHH GGG GGG </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH -----</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B4WD</entryIDChain>
<sequence>IVCGG-DDPCK</sequence>
<secondary-structure> - H</secondary-structure>
<atom-coordinate>
<line>ATOM 3473 CA ILE D 82 20.467 11.093 43.240 1.00 39.36 C </line>
<line>ATOM 3481 CA VAL D 83 20.384 14.872 43.210 1.00 35.90 C </line>
<line>ATOM 3488 CA CYS D 84 22.555 16.811 40.792 1.00 34.75 C </line>
<line>ATOM 3494 CA GLY D 85 23.833 20.201 41.904 1.00 37.67 C </line>
<line>ATOM 3498 CA GLY D 86 26.450 22.810 41.084 1.00 45.94 C </line>
<line>ATOM 3502 CA ASP D 88 26.368 26.156 39.282 1.00 51.14 C </line>
<line>ATOM 3510 CA ASP D 89 27.713 24.667 36.062 1.00 38.40 C </line>
<line>ATOM 3518 CA PRO D 90 24.740 23.906 33.776 1.00 27.59 C </line>
<line>ATOM 3525 CA CYS D 91 26.887 21.709 31.531 1.00 25.26 C </line>
<line>ATOM 3531 CA LYS D 92 28.263 19.385 34.192 1.00 21.57 C </line>
</atom-coordinate>
<distance-map>
<line> LYS CYS PRO ASP ASP GLY GLY CYS VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.54 17.06 16.49 16.98 16.65 13.33 9.80 6.56 3.78 </line>
<line>VAL CA 12.80 15.01 13.77 14.17 13.36 10.21 6.48 3.78 </line>
<line>CYS CA 9.10 11.34 10.21 10.52 10.21 7.16 3.79 </line>
<line>GLY CA 8.93 10.92 8.98 8.31 6.98 3.79 </line>
<line>GLY CA 7.91 9.63 7.58 5.50 3.80 </line>
<line>ASP CA 8.68 8.95 6.17 3.79 </line>
<line>ASP CA 5.63 5.47 3.83 </line>
<line>PRO CA 5.75 3.80 </line>
<line>CYS CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ILE CA 291</line>
<line>VAL CA 257</line>
<line>CYS CA 291</line>
<line>GLY CA 219</line>
<line>GLY CA 173</line>
<line>ASP CA 138</line>
<line>ASP CA 181</line>
<line>PRO CA 198</line>
<line>CYS CA 242</line>
<line>LYS CA 304</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>PYCRNIKKKCL</sequence>
<secondary-structure>EE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
<line>ATOM 677 CA LEU A 92 0.513 17.277 30.127 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> LEU CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 14.83 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 12.64 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 9.16 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 9.40 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 6.67 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 8.69 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.81 8.92 5.46 3.84 </line>
<line>LYS CA 5.71 5.98 3.82 </line>
<line>LYS CA 5.47 3.84 </line>
<line>CYS CA 3.82 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
<line>LEU CA 315</line>
</n14>
</entryChain>
<parallel>
<x>18.399999618530273</x>
<y>1.2519999742507935</y>
<z>13.574999809265137</z>
</parallel>
<rotation>
<x>-0.8450000286102295</x>
<y>-0.2840000092983246</y>
<z>0.453000009059906</z>
<x>-0.2939999997615814</x>
<y>0.9539999961853027</y>
<z>0.05000000074505806</z>
<x>-0.44600000977516174</x>
<y>-0.09099999815225601</y>
<z>-0.8899999856948853</z>
</rotation>
<rmsd>1.1323599815368652</rmsd>
<dmax>1.6476000547409058</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B4W</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1B4WD</entryIDChain>
<sequence>CFRDNLKTYKKR</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 3626 CA CYS D 105 16.609 3.290 33.682 1.00 11.79 C </line>
<line>ATOM 3632 CA PHE D 106 18.726 0.263 34.518 1.00 12.48 C </line>
<line>ATOM 3643 CA ARG D 107 16.939 -0.117 37.844 1.00 15.70 C </line>
<line>ATOM 3654 CA ASP D 108 13.455 -0.079 36.333 1.00 12.91 C </line>
<line>ATOM 3662 CA ASN D 109 14.319 -2.659 33.692 1.00 16.21 C </line>
<line>ATOM 3670 CA LEU D 110 16.437 -4.943 35.864 1.00 13.39 C </line>
<line>ATOM 3678 CA LYS D 111 13.603 -7.461 35.528 1.00 16.57 C </line>
<line>ATOM 3687 CA THR D 112 14.302 -7.840 31.797 1.00 21.60 C </line>
<line>ATOM 3694 CA TYR D 113 18.105 -8.006 32.145 1.00 18.12 C </line>
<line>ATOM 3706 CA LYS D 114 19.491 -10.888 30.051 1.00 21.39 C </line>
<line>ATOM 3715 CA LYS D 115 22.935 -12.349 30.760 1.00 22.36 C </line>
<line>ATOM 3724 CA ARG D 116 23.157 -13.495 27.165 1.00 14.91 C </line>
</atom-coordinate>
<distance-map>
<line> ARG LYS LYS TYR THR LYS LEU ASN ASP ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.16 17.12 14.92 11.50 11.52 11.31 8.52 6.37 5.32 5.39 3.79 </line>
<line>PHE CA 16.22 13.82 12.04 8.63 9.62 9.32 5.84 5.35 5.59 3.79 </line>
<line>ARG CA 18.21 15.35 13.54 9.80 10.16 8.39 5.24 5.53 3.80 </line>
<line>ASP CA 18.93 16.48 13.88 10.10 9.03 7.43 5.72 3.79 </line>
<line>ASN CA 15.43 13.29 10.38 6.73 5.52 5.19 3.80 </line>
<line>LEU CA 13.93 11.10 8.86 5.10 5.43 3.81 </line>
<line>LYS CA 14.06 11.56 8.74 5.66 3.81 </line>
<line>THR CA 11.48 9.79 6.27 3.82 </line>
<line>TYR CA 8.97 6.64 3.82 </line>
<line>LYS CA 5.34 3.81 </line>
<line>LYS CA 3.78 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 403</line>
<line>ARG CA 314</line>
<line>ASP CA 238</line>
<line>ASN CA 269</line>
<line>LEU CA 280</line>
<line>LYS CA 194</line>
<line>THR CA 227</line>
<line>TYR CA 301</line>
<line>LYS CA 257</line>
<line>LYS CA 243</line>
<line>ARG CA 215</line>
</n14>
</entryChain>
<parallel>
<x>3.8350000381469727</x>
<y>6.739999771118164</y>
<z>4.179999828338623</z>
</parallel>
<rotation>
<x>-0.8560000061988831</x>
<y>-0.5170000195503235</y>
<z>-0.007000000216066837</z>
<x>-0.5040000081062317</x>
<y>0.8379999995231628</y>
<z>-0.20800000429153442</z>
<x>0.11299999803304672</x>
<y>-0.17499999701976776</y>
<z>-0.9779999852180481</z>
</rotation>
<rmsd>0.8661969900131226</rmsd>
<dmax>1.7793079614639282</dmax>
</indel>