NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B7NA-2G4NF
confEVID 1B7NA-2G4NF
pdbIDA 1B7N
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWLSGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7N</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7NA</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 342 CA THR A 43 3.242 8.505 26.526 1.00 10.42 C </line>
<line>ATOM 349 CA ASN A 44 4.694 5.028 26.547 1.00 12.05 C </line>
<line>ATOM 357 CA TYR A 45 3.306 2.276 28.774 1.00 9.46 C </line>
<line>ATOM 369 CA ASN A 46 5.795 -0.403 29.830 1.00 10.99 C </line>
<line>ATOM 377 CA ALA A 47 3.755 -3.603 30.164 1.00 9.63 C </line>
<line>ATOM 382 CA GLY A 48 6.766 -5.445 31.555 1.00 9.29 C </line>
<line>ATOM 386 CA ASP A 49 7.076 -3.375 34.713 1.00 8.28 C </line>
<line>ATOM 394 CA ARG A 50 3.715 -1.562 34.858 1.00 11.68 C </line>
<line>ATOM 405 CA SER A 51 5.212 1.923 34.589 1.00 8.68 C </line>
<line>ATOM 411 CA THR A 52 4.569 4.767 32.111 1.00 5.80 C </line>
<line>ATOM 418 CA ASP A 53 6.857 7.396 30.530 1.00 5.03 C </line>
<line>ATOM 426 CA TYR A 54 5.317 10.855 30.403 1.00 6.08 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.99 5.51 6.85 10.59 13.08 14.93 15.24 12.65 9.84 6.62 3.77 </line>
<line>ASN CA 7.02 5.11 5.57 8.64 10.65 11.96 11.79 9.41 6.44 3.80 </line>
<line>TYR CA 8.96 6.47 4.35 6.13 7.21 9.02 8.91 6.06 3.81 </line>
<line>ASN CA 11.28 7.90 5.78 5.33 5.56 5.86 5.42 3.81 </line>
<line>ALA CA 14.54 11.43 8.63 7.23 5.12 5.64 3.79 </line>
<line>GLY CA 16.40 12.88 10.46 8.12 5.94 3.79 </line>
<line>ASP CA 14.97 11.56 8.91 5.62 3.82 </line>
<line>ARG CA 13.29 10.43 6.95 3.80 </line>
<line>SER CA 9.86 7.01 3.83 </line>
<line>THR CA 6.37 3.83 </line>
<line>ASP CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 293</line>
<line>ASN CA 268</line>
<line>TYR CA 229</line>
<line>ASN CA 197</line>
<line>ALA CA 142</line>
<line>GLY CA 126</line>
<line>ASP CA 165</line>
<line>ARG CA 198</line>
<line>SER CA 260</line>
<line>THR CA 320</line>
<line>ASP CA 410</line>
<line>TYR CA 436</line>
</n14>
</entryChain>
<parallel>
<x>54.59299850463867</x>
<y>13.378999710083008</y>
<z>87.5780029296875</z>
</parallel>
<rotation>
<x>-0.3610000014305115</x>
<y>0.4359999895095825</y>
<z>0.8240000009536743</z>
<x>-0.8360000252723694</x>
<y>0.23899999260902405</y>
<z>-0.49300000071525574</z>
<x>-0.41200000047683716</x>
<y>-0.8679999709129333</y>
<z>0.27799999713897705</z>
</rotation>
<rmsd>0.6914700269699097</rmsd>
<dmax>1.3510249853134155</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7N</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7NA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 753 CA ARG A 98 15.961 16.731 39.120 1.00 5.39 C </line>
<line>ATOM 764 CA VAL A 99 16.771 13.595 37.105 1.00 4.85 C </line>
<line>ATOM 771 CA VAL A 100 20.165 14.831 35.982 1.00 5.59 C </line>
<line>ATOM 778 CA ARG A 101 21.124 15.890 39.508 1.00 11.24 C </line>
<line>ATOM 789 CA ASP A 102 21.581 12.168 40.213 1.00 13.34 C </line>
<line>ATOM 797 CA PRO A 103 24.915 10.293 39.553 1.00 12.22 C </line>
<line>ATOM 804 CA GLN A 104 24.224 9.426 35.912 1.00 13.49 C </line>
<line>ATOM 813 CA GLY A 105 23.565 12.957 34.772 1.00 13.58 C </line>
<line>ATOM 817 CA ILE A 106 22.088 13.103 31.249 1.00 12.17 C </line>
<line>ATOM 825 CA ARG A 107 23.024 9.400 30.992 1.00 12.02 C </line>
<line>ATOM 836 CA ALA A 108 19.831 8.491 32.918 1.00 9.40 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.02 13.03 10.61 9.54 11.49 11.04 7.32 5.25 5.58 3.81 </line>
<line>VAL CA 7.28 9.70 7.92 7.21 8.62 9.12 5.90 5.48 3.78 </line>
<line>VAL CA 7.05 7.91 5.39 4.07 6.76 7.48 5.20 3.80 </line>
<line>ARG CA 9.99 10.87 8.77 6.08 8.02 6.76 3.82 </line>
<line>ASP CA 8.35 9.74 9.03 5.84 5.74 3.88 </line>
<line>PRO CA 8.55 8.81 9.21 5.64 3.81 </line>
<line>GLN CA 5.40 5.06 6.31 3.77 </line>
<line>GLY CA 6.11 5.22 3.82 </line>
<line>ILE CA 5.40 3.83 </line>
<line>ARG CA 3.84 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 335</line>
<line>VAL CA 389</line>
<line>VAL CA 345</line>
<line>ARG CA 246</line>
<line>ASP CA 227</line>
<line>PRO CA 173</line>
<line>GLN CA 224</line>
<line>GLY CA 288</line>
<line>ILE CA 387</line>
<line>ARG CA 310</line>
<line>ALA CA 340</line>
</n14>
</entryChain>
<parallel>
<x>19.746999740600586</x>
<y>3.0490000247955322</y>
<z>90.29299926757812</z>
</parallel>
<rotation>
<x>-0.22200000286102295</x>
<y>0.23899999260902405</y>
<z>0.9449999928474426</z>
<x>-0.890999972820282</x>
<y>0.34299999475479126</y>
<z>-0.296999990940094</z>
<x>-0.39500001072883606</x>
<y>-0.9079999923706055</y>
<z>0.13699999451637268</z>
</rotation>
<rmsd>1.0244580507278442</rmsd>
<dmax>2.228281021118164</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7N</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7NA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 892 CA ASN A 114 21.959 5.555 21.964 1.00 7.85 C </line>
<line>ATOM 900 CA ARG A 115 21.350 8.636 19.856 1.00 8.56 C </line>
<line>ATOM 911 CA CYS A 116 23.106 11.668 21.350 1.00 5.85 C </line>
<line>ATOM 917 CA GLN A 117 26.264 10.619 23.194 1.00 7.01 C </line>
<line>ATOM 926 CA ASN A 118 29.385 11.156 21.080 1.00 7.21 C </line>
<line>ATOM 934 CA ARG A 119 27.257 12.371 18.202 1.00 7.07 C </line>
<line>ATOM 945 CA ASP A 120 27.307 15.644 16.290 1.00 10.80 C </line>
<line>ATOM 953 CA VAL A 121 24.300 17.417 17.850 1.00 10.23 C </line>
<line>ATOM 960 CA ARG A 122 25.119 20.928 16.504 1.00 13.52 C </line>
<line>ATOM 971 CA GLN A 123 22.223 20.538 14.074 1.00 13.02 C </line>
<line>ATOM 980 CA TYR A 124 19.616 20.752 16.849 1.00 8.81 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.20 16.94 16.62 12.77 12.75 9.42 9.34 6.76 6.25 3.78 </line>
<line>ARG CA 12.60 13.26 13.29 9.48 9.86 7.18 8.51 6.26 3.81 </line>
<line>CYS CA 10.72 11.51 10.64 6.84 7.69 5.26 6.31 3.80 </line>
<line>GLN CA 13.68 14.07 12.34 8.87 8.60 5.38 3.81 </line>
<line>ASN CA 14.33 13.73 11.60 8.69 6.89 3.78 </line>
<line>ARG CA 11.42 10.44 8.98 5.86 3.79 </line>
<line>ASP CA 9.25 7.40 5.72 3.82 </line>
<line>VAL CA 5.84 5.32 3.85 </line>
<line>ARG CA 5.52 3.80 </line>
<line>GLN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 218</line>
<line>ARG CA 263</line>
<line>CYS CA 307</line>
<line>GLN CA 276</line>
<line>ASN CA 195</line>
<line>ARG CA 220</line>
<line>ASP CA 201</line>
<line>VAL CA 281</line>
<line>ARG CA 228</line>
<line>GLN CA 231</line>
<line>TYR CA 335</line>
</n14>
</entryChain>
<parallel>
<x>20.059999465942383</x>
<y>22.836000442504883</y>
<z>108.19100189208984</z>
</parallel>
<rotation>
<x>-0.4090000092983246</x>
<y>0.39100000262260437</y>
<z>0.8240000009536743</z>
<x>-0.7749999761581421</x>
<y>0.32899999618530273</y>
<z>-0.5400000214576721</z>
<x>-0.4819999933242798</x>
<y>-0.8600000143051147</y>
<z>0.16899999976158142</z>
</rotation>
<rmsd>1.1938209533691406</rmsd>
<dmax>2.423111915588379</dmax>
</indel>