NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B7OA-2G4NF
confEVID 1B7OA-2G4NF
pdbIDA 1B7O
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.335900008678436
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESQYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHGGG GGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7OA</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 348 CA THR A 43 3.253 8.578 26.604 1.00 14.68 C </line>
<line>ATOM 355 CA ASN A 44 4.588 5.037 26.527 1.00 15.36 C </line>
<line>ATOM 363 CA TYR A 45 3.282 2.211 28.716 1.00 9.83 C </line>
<line>ATOM 375 CA ASN A 46 5.829 -0.382 29.797 1.00 10.63 C </line>
<line>ATOM 383 CA ALA A 47 3.795 -3.574 30.112 1.00 9.53 C </line>
<line>ATOM 388 CA GLY A 48 6.878 -5.410 31.369 1.00 9.48 C </line>
<line>ATOM 392 CA ASP A 49 7.084 -3.476 34.631 1.00 10.13 C </line>
<line>ATOM 400 CA ARG A 50 3.749 -1.573 34.791 1.00 14.35 C </line>
<line>ATOM 411 CA SER A 51 5.373 1.853 34.483 1.00 9.73 C </line>
<line>ATOM 417 CA THR A 52 4.615 4.694 32.039 1.00 5.33 C </line>
<line>ATOM 424 CA ASP A 53 6.824 7.351 30.426 1.00 6.26 C </line>
<line>ATOM 432 CA TYR A 54 5.333 10.848 30.352 1.00 6.16 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.85 5.37 6.82 10.57 13.05 14.98 15.22 12.66 9.85 6.71 3.79 </line>
<line>ASN CA 7.00 5.06 5.52 8.61 10.62 12.02 11.74 9.36 6.45 3.81 </line>
<line>TYR CA 9.03 6.47 4.36 6.14 7.17 9.04 8.83 5.97 3.79 </line>
<line>ASN CA 11.25 7.82 5.68 5.21 5.54 5.87 5.37 3.80 </line>
<line>ALA CA 14.51 11.34 8.53 7.14 5.09 5.59 3.80 </line>
<line>GLY CA 16.36 12.80 10.38 8.04 6.02 3.80 </line>
<line>ASP CA 15.05 11.62 8.92 5.60 3.84 </line>
<line>ARG CA 13.29 10.40 6.90 3.80 </line>
<line>SER CA 9.90 6.99 3.82 </line>
<line>THR CA 6.42 3.81 </line>
<line>ASP CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 299</line>
<line>ASN CA 264</line>
<line>TYR CA 227</line>
<line>ASN CA 200</line>
<line>ALA CA 142</line>
<line>GLY CA 125</line>
<line>ASP CA 162</line>
<line>ARG CA 198</line>
<line>SER CA 262</line>
<line>THR CA 319</line>
<line>ASP CA 411</line>
<line>TYR CA 438</line>
</n14>
</entryChain>
<parallel>
<x>54.569000244140625</x>
<y>13.390000343322754</y>
<z>87.61900329589844</z>
</parallel>
<rotation>
<x>-0.3720000088214874</x>
<y>0.41999998688697815</y>
<z>0.828000009059906</z>
<x>-0.8320000171661377</x>
<y>0.24500000476837158</y>
<z>-0.49799999594688416</z>
<x>-0.41100001335144043</x>
<y>-0.8740000128746033</y>
<z>0.257999986410141</z>
</rotation>
<rmsd>0.7017530202865601</rmsd>
<dmax>1.3242100477218628</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7OA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HGGG GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 759 CA ARG A 98 15.995 16.758 39.162 1.00 7.89 C </line>
<line>ATOM 770 CA VAL A 99 16.760 13.600 37.153 1.00 5.39 C </line>
<line>ATOM 777 CA VAL A 100 20.186 14.877 36.146 1.00 7.58 C </line>
<line>ATOM 784 CA ARG A 101 21.007 15.946 39.719 1.00 13.78 C </line>
<line>ATOM 795 CA ASP A 102 21.601 12.208 40.242 1.00 13.44 C </line>
<line>ATOM 803 CA PRO A 103 24.814 10.195 39.525 1.00 14.48 C </line>
<line>ATOM 810 CA GLN A 104 24.221 9.322 35.837 1.00 13.64 C </line>
<line>ATOM 819 CA GLY A 105 23.458 12.865 34.769 1.00 10.75 C </line>
<line>ATOM 823 CA ILE A 106 22.097 13.037 31.207 1.00 11.69 C </line>
<line>ATOM 831 CA ARG A 107 22.911 9.303 30.889 1.00 9.49 C </line>
<line>ATOM 842 CA ALA A 108 19.780 8.508 32.932 1.00 10.15 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.01 13.11 10.69 9.49 11.58 11.00 7.30 5.11 5.50 3.82 </line>
<line>VAL CA 7.27 9.77 8.01 7.15 8.70 9.06 5.91 5.49 3.79 </line>
<line>VAL CA 7.15 8.13 5.61 4.08 6.87 7.40 5.09 3.82 </line>
<line>ARG CA 10.14 11.21 9.06 6.32 8.32 6.90 3.82 </line>
<line>ASP CA 8.39 9.88 9.09 5.82 5.88 3.86 </line>
<line>PRO CA 8.46 8.89 9.20 5.62 3.84 </line>
<line>GLN CA 5.37 5.12 6.30 3.78 </line>
<line>GLY CA 5.99 5.30 3.82 </line>
<line>ILE CA 5.37 3.83 </line>
<line>ARG CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 335</line>
<line>VAL CA 388</line>
<line>VAL CA 340</line>
<line>ARG CA 242</line>
<line>ASP CA 223</line>
<line>PRO CA 176</line>
<line>GLN CA 225</line>
<line>GLY CA 297</line>
<line>ILE CA 385</line>
<line>ARG CA 318</line>
<line>ALA CA 344</line>
</n14>
</entryChain>
<parallel>
<x>19.766000747680664</x>
<y>3.059999942779541</y>
<z>90.24600219726562</z>
</parallel>
<rotation>
<x>-0.2290000021457672</x>
<y>0.23899999260902405</y>
<z>0.9440000057220459</z>
<x>-0.8889999985694885</x>
<y>0.3440000116825104</y>
<z>-0.30300000309944153</z>
<x>-0.3970000147819519</x>
<y>-0.9079999923706055</y>
<z>0.1340000033378601</z>
</rotation>
<rmsd>1.058784008026123</rmsd>
<dmax>2.3446860313415527</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7OA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 898 CA ASN A 114 21.864 5.480 21.948 1.00 9.18 C </line>
<line>ATOM 906 CA ARG A 115 21.436 8.567 19.740 1.00 9.30 C </line>
<line>ATOM 917 CA CYS A 116 23.064 11.603 21.390 1.00 8.91 C </line>
<line>ATOM 923 CA GLN A 117 26.180 10.446 23.219 1.00 7.88 C </line>
<line>ATOM 932 CA ASN A 118 29.382 10.960 21.167 1.00 9.85 C </line>
<line>ATOM 940 CA ARG A 119 27.384 12.317 18.225 1.00 8.72 C </line>
<line>ATOM 951 CA ASP A 120 27.395 15.665 16.418 1.00 10.13 C </line>
<line>ATOM 959 CA VAL A 121 24.330 17.339 17.991 1.00 11.01 C </line>
<line>ATOM 966 CA ARG A 122 25.014 20.862 16.686 1.00 19.23 C </line>
<line>ATOM 977 CA GLN A 123 22.202 20.531 14.127 1.00 15.88 C </line>
<line>ATOM 986 CA TYR A 124 19.530 20.691 16.824 1.00 13.77 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.22 16.97 16.56 12.74 12.84 9.54 9.34 6.70 6.26 3.82 </line>
<line>ARG CA 12.61 13.24 13.16 9.40 9.85 7.19 8.42 6.18 3.82 </line>
<line>CYS CA 10.77 11.54 10.57 6.79 7.74 5.40 6.35 3.79 </line>
<line>GLN CA 13.79 14.15 12.35 8.85 8.66 5.47 3.84 </line>
<line>ASN CA 14.51 13.88 11.71 8.74 6.97 3.81 </line>
<line>ARG CA 11.57 10.54 9.00 5.88 3.80 </line>
<line>ASP CA 9.34 7.48 5.72 3.83 </line>
<line>VAL CA 5.97 5.44 3.82 </line>
<line>ARG CA 5.49 3.82 </line>
<line>GLN CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 219</line>
<line>ARG CA 258</line>
<line>CYS CA 309</line>
<line>GLN CA 276</line>
<line>ASN CA 193</line>
<line>ARG CA 216</line>
<line>ASP CA 200</line>
<line>VAL CA 284</line>
<line>ARG CA 235</line>
<line>GLN CA 231</line>
<line>TYR CA 335</line>
</n14>
</entryChain>
<parallel>
<x>20.075000762939453</x>
<y>22.923999786376953</y>
<z>108.13200378417969</z>
</parallel>
<rotation>
<x>-0.4000000059604645</x>
<y>0.40299999713897705</y>
<z>0.8230000138282776</z>
<x>-0.7689999938011169</x>
<y>0.3409999907016754</y>
<z>-0.5410000085830688</z>
<x>-0.49900001287460327</x>
<y>-0.8489999771118164</y>
<z>0.17299999296665192</z>
</rotation>
<rmsd>1.2186130285263062</rmsd>
<dmax>2.482254981994629</dmax>
</indel>