NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B7QA-2G4NF
confEVID 1B7QA-2G4NF
pdbIDA 1B7Q
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLALWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNND--STEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSE-KLDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHGGG GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE --EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH - GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>VQNND--STEYG</sequence>
<secondary-structure>EEE --EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
<line>ATOM 5287 CA GLY F 51 49.369 20.850 112.589 1.00 39.22 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU THR SER ASP ASN ASN GLN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 8.76 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 11.83 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 14.82 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 17.47 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 17.52 13.91 10.63 7.33 3.85 </line>
<line>SER CA 13.80 10.15 6.88 3.81 </line>
<line>THR CA 10.24 6.66 3.78 </line>
<line>GLU CA 7.08 3.77 </line>
<line>TYR CA 3.83 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
<line>GLY CA 441</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7QA</entryIDChain>
<sequence>NYNAGDRSTDYG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 350 CA ASN A 44 4.671 5.139 26.757 1.00 10.55 C </line>
<line>ATOM 358 CA TYR A 45 3.333 2.247 28.779 1.00 5.71 C </line>
<line>ATOM 370 CA ASN A 46 5.838 -0.428 29.744 1.00 8.56 C </line>
<line>ATOM 378 CA ALA A 47 3.825 -3.628 30.362 1.00 9.21 C </line>
<line>ATOM 383 CA GLY A 48 6.969 -5.430 31.530 1.00 9.30 C </line>
<line>ATOM 387 CA ASP A 49 7.252 -3.357 34.691 1.00 10.10 C </line>
<line>ATOM 395 CA ARG A 50 3.909 -1.559 34.620 1.00 12.06 C </line>
<line>ATOM 406 CA SER A 51 5.210 2.019 34.631 1.00 8.54 C </line>
<line>ATOM 412 CA THR A 52 4.681 4.893 32.163 1.00 5.71 C </line>
<line>ATOM 419 CA ASP A 53 6.946 7.488 30.477 1.00 3.00 C </line>
<line>ATOM 427 CA TYR A 54 5.282 10.910 30.319 1.00 6.20 C </line>
<line>ATOM 439 CA GLY A 55 5.692 14.035 28.206 1.00 3.44 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 9.07 6.81 4.95 5.41 8.49 10.36 11.91 11.82 9.52 6.42 3.77 </line>
<line>TYR CA 12.04 9.01 6.59 4.50 6.15 7.00 9.04 8.93 6.10 3.79 </line>
<line>ASN CA 14.55 11.37 8.03 5.96 5.50 5.36 5.92 5.43 3.83 </line>
<line>ALA CA 17.89 14.61 11.55 8.75 7.21 4.73 5.53 3.81 </line>
<line>GLY CA 19.79 16.47 12.96 10.59 8.26 5.82 3.79 </line>
<line>ASP CA 18.63 15.05 11.64 9.00 5.75 3.80 </line>
<line>ARG CA 16.96 13.26 10.40 6.95 3.81 </line>
<line>SER CA 13.63 9.88 7.08 3.83 </line>
<line>THR CA 10.01 6.32 3.83 </line>
<line>ASP CA 7.04 3.81 </line>
<line>TYR CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ASN CA 280</line>
<line>TYR CA 232</line>
<line>ASN CA 200</line>
<line>ALA CA 145</line>
<line>GLY CA 130</line>
<line>ASP CA 164</line>
<line>ARG CA 198</line>
<line>SER CA 263</line>
<line>THR CA 325</line>
<line>ASP CA 417</line>
<line>TYR CA 438</line>
<line>GLY CA 419</line>
</n14>
</entryChain>
<parallel>
<x>53.430999755859375</x>
<y>13.595999717712402</y>
<z>88.0009994506836</z>
</parallel>
<rotation>
<x>-0.4429999887943268</x>
<y>0.17599999904632568</y>
<z>0.8790000081062317</z>
<x>-0.7770000100135803</x>
<y>0.41499999165534973</y>
<z>-0.4740000069141388</z>
<x>-0.4480000138282776</x>
<y>-0.8930000066757202</y>
<z>-0.04699999839067459</z>
</rotation>
<rmsd>1.5742559432983398</rmsd>
<dmax>3.2563140392303467</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7QA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HGGG GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 754 CA ARG A 98 16.040 16.815 39.221 1.00 3.49 C </line>
<line>ATOM 765 CA VAL A 99 16.873 13.696 37.214 1.00 4.71 C </line>
<line>ATOM 772 CA VAL A 100 20.259 14.912 36.025 1.00 6.54 C </line>
<line>ATOM 779 CA ARG A 101 21.223 16.078 39.511 1.00 9.47 C </line>
<line>ATOM 790 CA ASP A 102 21.724 12.338 40.280 1.00 6.93 C </line>
<line>ATOM 798 CA PRO A 103 25.176 10.710 39.495 1.00 6.83 C </line>
<line>ATOM 805 CA GLN A 104 24.355 9.359 36.018 1.00 9.98 C </line>
<line>ATOM 814 CA GLY A 105 23.190 12.777 34.886 1.00 8.21 C </line>
<line>ATOM 818 CA ILE A 106 21.610 12.949 31.427 1.00 7.81 C </line>
<line>ATOM 826 CA ARG A 107 22.669 9.322 30.912 1.00 9.80 C </line>
<line>ATOM 837 CA ALA A 108 19.683 8.324 33.066 1.00 8.32 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.10 13.00 10.33 9.29 11.62 10.99 7.31 5.24 5.62 3.80 </line>
<line>VAL CA 7.35 9.61 7.52 6.79 8.73 9.11 5.90 5.47 3.79 </line>
<line>VAL CA 7.24 7.95 5.18 3.80 6.90 7.34 5.18 3.80 </line>
<line>ARG CA 10.20 11.03 8.68 6.01 8.19 6.67 3.85 </line>
<line>ASP CA 8.50 9.89 8.87 5.61 5.83 3.90 </line>
<line>PRO CA 8.79 9.05 9.10 5.43 3.82 </line>
<line>GLN CA 5.62 5.38 6.44 3.78 </line>
<line>GLY CA 5.95 5.29 3.81 </line>
<line>ILE CA 5.27 3.81 </line>
<line>ARG CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 329</line>
<line>VAL CA 386</line>
<line>VAL CA 345</line>
<line>ARG CA 245</line>
<line>ASP CA 227</line>
<line>PRO CA 173</line>
<line>GLN CA 224</line>
<line>GLY CA 300</line>
<line>ILE CA 395</line>
<line>ARG CA 322</line>
<line>ALA CA 349</line>
</n14>
</entryChain>
<parallel>
<x>19.773000717163086</x>
<y>3.0209999084472656</y>
<z>90.2030029296875</z>
</parallel>
<rotation>
<x>-0.2409999966621399</x>
<y>0.19300000369548798</y>
<z>0.9509999752044678</z>
<x>-0.9070000052452087</x>
<y>0.30399999022483826</y>
<z>-0.2919999957084656</z>
<x>-0.3449999988079071</x>
<y>-0.9330000281333923</y>
<z>0.10199999809265137</z>
</rotation>
<rmsd>1.0663609504699707</rmsd>
<dmax>2.392875909805298</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5757 CA ALA F 109 50.490 30.491 130.394 1.00 40.14 C </line>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.03 15.58 16.23 12.69 11.42 8.82 7.03 6.22 3.86 </line>
<line>LEU CA 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 5.66 5.44 3.81 </line>
<line>ASP CA 5.39 3.86 </line>
<line>GLN CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 198</line>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B7Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B7QA</entryIDChain>
<sequence>NRCQNRDVRQY</sequence>
<secondary-structure>H </secondary-structure>
<atom-coordinate>
<line>ATOM 893 CA ASN A 114 21.988 5.423 21.968 1.00 6.56 C </line>
<line>ATOM 901 CA ARG A 115 21.284 8.597 19.928 1.00 6.54 C </line>
<line>ATOM 912 CA CYS A 116 22.988 11.637 21.474 1.00 5.44 C </line>
<line>ATOM 918 CA GLN A 117 26.101 10.590 23.388 1.00 7.08 C </line>
<line>ATOM 927 CA ASN A 118 29.269 11.322 21.421 1.00 11.47 C </line>
<line>ATOM 935 CA ARG A 119 27.234 12.564 18.448 1.00 11.53 C </line>
<line>ATOM 946 CA ASP A 120 27.249 15.787 16.365 1.00 11.32 C </line>
<line>ATOM 954 CA VAL A 121 24.205 17.537 17.808 1.00 8.18 C </line>
<line>ATOM 961 CA ARG A 122 24.913 21.111 16.539 1.00 10.63 C </line>
<line>ATOM 972 CA GLN A 123 22.143 20.647 13.999 1.00 12.75 C </line>
<line>ATOM 981 CA TYR A 124 19.519 20.762 16.793 1.00 7.48 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 16.38 17.18 16.86 13.00 12.90 9.53 9.39 6.76 6.31 3.84 </line>
<line>ARG CA 12.69 13.46 13.46 9.64 10.00 7.30 8.57 6.26 3.81 </line>
<line>CYS CA 10.83 11.74 10.85 7.05 7.84 5.30 6.29 3.80 </line>
<line>GLN CA 13.79 14.32 12.61 9.11 8.81 5.44 3.80 </line>
<line>ASN CA 14.34 13.89 11.77 8.79 7.04 3.81 </line>
<line>ARG CA 11.38 10.54 9.06 5.86 3.84 </line>
<line>ASP CA 9.20 7.44 5.82 3.80 </line>
<line>VAL CA 5.78 5.33 3.86 </line>
<line>ARG CA 5.41 3.79 </line>
<line>GLN CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ASN CA 215</line>
<line>ARG CA 260</line>
<line>CYS CA 312</line>
<line>GLN CA 275</line>
<line>ASN CA 200</line>
<line>ARG CA 222</line>
<line>ASP CA 196</line>
<line>VAL CA 281</line>
<line>ARG CA 229</line>
<line>GLN CA 226</line>
<line>TYR CA 328</line>
</n14>
</entryChain>
<parallel>
<x>20.159000396728516</x>
<y>22.788999557495117</y>
<z>108.08999633789062</z>
</parallel>
<rotation>
<x>-0.3779999911785126</x>
<y>0.4059999883174896</y>
<z>0.8320000171661377</z>
<x>-0.7850000262260437</x>
<y>0.3370000123977661</y>
<z>-0.5210000276565552</z>
<x>-0.492000013589859</x>
<y>-0.8489999771118164</y>
<z>0.19200000166893005</z>
</rotation>
<rmsd>1.2402149438858032</rmsd>
<dmax>2.4784209728240967</dmax>
</indel>