NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B8DK-2UUMK
confEVID 1B8DK-2UUMK
pdbIDA 1B8D
pdbIDB 2UUM
pdbChainA K
pdbChainB K
identity 0.361400008201599
indelSize 2
alignment <alignment>
<seq1>MKSVITTTISAADAAGRFPSSSDLESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKYSYLKNAGEA--GDSPEKINKCYRDIDHYMRLINYSLVVGGTGPVDEWGIAGSREVYRALNLPGSAYIAAFTFTRDRLCVPRDMSSQAGVEFTSALDYVINSLC</seq1>
<seq2>MKTPLTEAVSVADSQGRFLSSTEIQVAFGRFRQAKAGLEAAKALTSKADSLISGAAQAVYNKFPYTTQMQGPNYAADQRGKDKCARDIGYYLRMVTYCLIAGGTGPMDEYLIAGIDEINRTFELSPSWYIEALKYIKANHG----LSGDAAVEANSYLDYAINALS</seq2>
<ss_1> HHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGGG -- HHHHHHHHHHHHHHHHHHHHHHH HHHIIIII HHHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHH HHHH HHHHHHHHHHHHHHHHHHHHHHH HHHIIIII HHHHHHH HHHHHHHHHHHH ---- HHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B8D</pdbID>
<pdbChain>K</pdbChain>
<entryIDChain>1B8DK</entryIDChain>
<sequence>NAGEA--GDSPE</sequence>
<secondary-structure> -- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 3740 CA ASN K 68 -25.479 -45.742 -7.845 1.00 34.40 C </line>
<line>ATOM 3751 CA ALA K 69 -27.575 -43.532 -10.117 1.00 34.52 C </line>
<line>ATOM 3757 CA GLY K 70 -26.448 -39.952 -9.683 1.00 33.32 C </line>
<line>ATOM 3762 CA GLU K 71 -23.096 -40.676 -8.090 1.00 30.63 C </line>
<line>ATOM 3772 CA ALA K 72 -19.553 -40.239 -9.426 1.00 27.57 C </line>
<line>ATOM 3778 CA GLY K 73 -19.323 -43.732 -10.955 1.00 26.21 C </line>
<line>ATOM 3783 CA ASP K 74 -22.878 -44.251 -12.252 1.00 30.74 C </line>
<line>ATOM 3792 CA SER K 75 -21.755 -45.000 -15.807 1.00 34.89 C </line>
<line>ATOM 3800 CA PRO K 76 -18.870 -46.670 -17.668 1.00 35.26 C </line>
<line>ATOM 3807 CA GLU K 77 -17.495 -43.321 -18.838 1.00 30.14 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO SER ASP GLY ALA GLU GLY ALA ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 13.80 11.88 8.82 5.33 7.18 8.24 5.60 6.15 3.80 </line>
<line>ALA CA 13.33 11.94 8.27 5.21 8.30 8.70 5.69 3.78 </line>
<line>GLY CA 13.24 12.90 9.22 6.15 8.17 6.91 3.78 </line>
<line>GLU CA 12.41 12.06 8.95 5.49 5.64 3.81 </line>
<line>ALA CA 10.12 10.48 8.26 5.93 3.82 </line>
<line>GLY CA 8.10 7.34 5.57 3.82 </line>
<line>ASP CA 8.56 7.16 3.80 </line>
<line>SER CA 5.49 3.82 </line>
<line>PRO CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ASN CA 199</line>
<line>ALA CA 164</line>
<line>GLY CA 186</line>
<line>GLU CA 283</line>
<line>ALA CA 377</line>
<line>GLY CA 372</line>
<line>ASP CA 245</line>
<line>SER CA 225</line>
<line>PRO CA 215</line>
<line>GLU CA 213</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2UUM</pdbID>
<pdbChain>K</pdbChain>
<entryIDChain>2UUMK</entryIDChain>
<sequence>QMQGPNYAADQR</sequence>
<secondary-structure>HH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 12964 CA GLN K 68 101.017 44.282 216.803 1.00 32.07 C </line>
<line>ATOM 12973 CA MET K 69 97.387 44.866 216.055 1.00 33.08 C </line>
<line>ATOM 12981 CA GLN K 70 95.346 41.633 216.459 1.00 36.00 C </line>
<line>ATOM 12990 CA GLY K 71 93.607 40.481 213.340 1.00 31.10 C </line>
<line>ATOM 12994 CA PRO K 72 94.368 38.368 210.273 1.00 27.20 C </line>
<line>ATOM 13001 CA ASN K 73 95.345 41.234 207.998 1.00 25.04 C </line>
<line>ATOM 13009 CA TYR K 74 98.396 42.103 210.192 1.00 24.78 C </line>
<line>ATOM 13021 CA ALA K 75 101.767 40.615 211.088 1.00 25.84 C </line>
<line>ATOM 13026 CA ALA K 76 101.385 40.414 214.828 1.00 27.58 C </line>
<line>ATOM 13031 CA ASP K 77 101.945 36.701 214.691 1.00 29.77 C </line>
<line>ATOM 13039 CA GLN K 78 104.208 34.260 212.767 1.00 30.22 C </line>
<line>ATOM 13048 CA ARG K 79 101.341 33.408 210.399 1.00 28.55 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLN ASP ALA ALA TYR ASN PRO GLY GLN MET GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 12.62 11.27 7.92 4.36 6.83 7.44 10.91 11.04 9.02 6.27 3.75 </line>
<line>MET CA 13.38 13.03 9.45 6.11 7.87 6.56 9.07 9.21 6.39 3.84 </line>
<line>GLN CA 11.85 12.10 8.43 6.37 8.43 6.99 8.47 7.06 3.75 </line>
<line>GLY CA 10.89 12.30 9.25 7.92 8.47 5.96 5.67 3.80 </line>
<line>PRO CA 8.56 10.95 8.93 8.61 7.78 5.49 3.79 </line>
<line>ASN CA 10.15 12.24 10.44 9.15 7.15 3.86 </line>
<line>TYR CA 9.18 10.10 7.88 5.77 3.79 </line>
<line>ALA CA 7.25 7.01 5.32 3.76 </line>
<line>ALA CA 8.29 7.08 3.76 </line>
<line>ASP CA 5.44 3.84 </line>
<line>GLN CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLN CA 206</line>
<line>MET CA 195</line>
<line>GLN CA 163</line>
<line>GLY CA 192</line>
<line>PRO CA 237</line>
<line>ASN CA 303</line>
<line>TYR CA 327</line>
<line>ALA CA 319</line>
<line>ALA CA 229</line>
<line>ASP CA 186</line>
<line>GLN CA 181</line>
<line>ARG CA 189</line>
</n14>
</entryChain>
<parallel>
<x>-121.61599731445312</x>
<y>-83.81099700927734</y>
<z>-224.71400451660156</z>
</parallel>
<rotation>
<x>0.1679999977350235</x>
<y>-0.8999999761581421</y>
<z>-0.40299999713897705</z>
<x>-0.40799999237060547</x>
<y>-0.4350000023841858</y>
<z>0.8019999861717224</z>
<x>-0.8970000147819519</x>
<y>0.028999999165534973</y>
<z>-0.4410000145435333</z>
</rotation>
<rmsd>1.91947603225708</rmsd>
<dmax>2.612190008163452</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2UUM</pdbID>
<pdbChain>K</pdbChain>
<entryIDChain>2UUMK</entryIDChain>
<sequence>KANHG----LSGDA</sequence>
<secondary-structure>HHH ---- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 13514 CA LYS K 137 114.983 49.836 194.881 1.00 22.54 C </line>
<line>ATOM 13523 CA ALA K 138 117.340 51.277 197.447 1.00 24.80 C </line>
<line>ATOM 13528 CA ASN K 139 118.980 47.900 198.109 1.00 26.00 C </line>
<line>ATOM 13536 CA HIS K 140 119.093 45.675 194.965 1.00 26.31 C </line>
<line>ATOM 13546 CA GLY K 141 122.528 47.179 194.286 1.00 28.46 C </line>
<line>ATOM 13550 CA LEU K 142 122.248 46.921 190.471 1.00 29.26 C </line>
<line>ATOM 13558 CA SER K 143 123.831 49.547 188.237 1.00 30.78 C </line>
<line>ATOM 13564 CA GLY K 144 123.639 50.715 184.618 1.00 30.43 C </line>
<line>ATOM 13568 CA ASP K 145 120.813 49.463 182.406 1.00 29.38 C </line>
<line>ATOM 13576 CA ALA K 146 120.069 46.530 184.741 1.00 26.15 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASP GLY SER LEU GLY HIS ASN ALA LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.82 13.78 13.45 11.07 8.98 8.02 5.85 5.49 3.77 </line>
<line>ALA CA 13.84 15.54 14.30 11.40 9.58 7.33 6.37 3.81 </line>
<line>ASN CA 13.48 15.89 14.55 11.12 8.37 5.27 3.85 </line>
<line>HIS CA 10.31 13.23 12.37 9.09 5.63 3.81 </line>
<line>GLY CA 9.88 12.22 10.35 6.63 3.83 </line>
<line>LEU CA 6.14 8.58 7.11 3.79 </line>
<line>SER CA 5.96 6.57 3.81 </line>
<line>GLY CA 5.50 3.80 </line>
<line>ASP CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LYS CA 342</line>
<line>ALA CA 258</line>
<line>ASN CA 273</line>
<line>HIS CA 334</line>
<line>GLY CA 233</line>
<line>LEU CA 260</line>
<line>SER CA 192</line>
<line>GLY CA 166</line>
<line>ASP CA 226</line>
<line>ALA CA 303</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B8D</pdbID>
<pdbChain>K</pdbChain>
<entryIDChain>1B8DK</entryIDChain>
<sequence>RDRLCVPRDMSSQA</sequence>
<secondary-structure>HHH HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4368 CA ARG K 135 0.575 -46.721 -0.311 1.00 18.81 C </line>
<line>ATOM 4385 CA ASP K 136 -0.270 -49.739 1.871 1.00 23.20 C </line>
<line>ATOM 4394 CA ARG K 137 0.177 -52.046 -1.104 1.00 22.23 C </line>
<line>ATOM 4411 CA LEU K 138 3.851 -51.141 -1.486 1.00 24.17 C </line>
<line>ATOM 4420 CA CYS K 139 6.059 -54.068 -0.587 1.00 26.80 C </line>
<line>ATOM 4427 CA VAL K 140 9.765 -53.494 0.125 1.00 27.92 C </line>
<line>ATOM 4435 CA PRO K 141 12.162 -54.844 -1.102 1.00 27.26 C </line>
<line>ATOM 4442 CA ARG K 142 9.794 -56.662 -3.476 1.00 23.96 C </line>
<line>ATOM 4459 CA ASP K 143 8.637 -53.591 -5.461 1.00 25.15 C </line>
<line>ATOM 4468 CA MET K 144 11.594 -51.253 -4.849 1.00 19.90 C </line>
<line>ATOM 4477 CA SER K 145 14.372 -50.491 -2.391 1.00 21.15 C </line>
<line>ATOM 4485 CA SER K 146 13.764 -49.113 1.060 1.00 25.51 C </line>
<line>ATOM 4493 CA GLN K 147 14.634 -45.523 0.205 1.00 21.37 C </line>
<line>ATOM 4505 CA ALA K 148 12.747 -45.548 -3.101 1.00 17.55 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN SER SER MET ASP ARG PRO VAL CYS LEU ARG ASP ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 12.54 14.12 13.47 14.45 12.75 11.78 13.92 14.17 11.42 9.17 5.63 5.40 3.82 </line>
<line>ASP CA 14.55 15.58 14.07 15.27 13.72 12.16 13.33 13.76 10.86 8.05 5.50 3.79 </line>
<line>ARG CA 14.29 15.91 14.07 14.34 12.04 9.64 10.93 12.31 9.77 6.24 3.80 </line>
<line>LEU CA 10.63 12.28 10.43 10.58 8.44 6.69 8.35 9.11 6.57 3.78 </line>
<line>CYS CA 11.12 12.13 9.31 9.23 7.53 5.53 5.39 6.17 3.82 </line>
<line>VAL CA 9.08 9.34 6.00 6.05 5.75 5.70 4.80 3.01 </line>
<line>PRO CA 9.53 9.73 6.33 5.05 5.22 5.74 3.81 </line>
<line>ARG CA 11.51 12.69 9.66 7.76 5.86 3.84 </line>
<line>ASP CA 9.34 11.54 9.43 7.21 3.82 </line>
<line>MET CA 6.08 8.22 6.65 3.79 </line>
<line>SER CA 5.25 5.61 3.77 </line>
<line>SER CA 5.57 3.79 </line>
<line>GLN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 431</line>
<line>ASP CA 322</line>
<line>ARG CA 341</line>
<line>LEU CA 378</line>
<line>CYS CA 266</line>
<line>VAL CA 234</line>
<line>PRO CA 196</line>
<line>ARG CA 191</line>
<line>ASP CA 307</line>
<line>MET CA 315</line>
<line>SER CA 253</line>
<line>SER CA 245</line>
<line>GLN CA 287</line>
<line>ALA CA 369</line>
</n14>
</entryChain>
<parallel>
<x>114.06500244140625</x>
<y>99.2030029296875</y>
<z>193.8509979248047</z>
</parallel>
<rotation>
<x>0.5559999942779541</x>
<y>0.08299999684095383</y>
<z>-0.8270000219345093</z>
<x>-0.8140000104904175</x>
<y>0.2540000081062317</y>
<z>-0.5220000147819519</z>
<x>0.16699999570846558</x>
<y>0.9639999866485596</y>
<z>0.20800000429153442</z>
</rotation>
<rmsd>2.0312509536743164</rmsd>
<dmax>3.1642069816589355</dmax>
</indel>