NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BU1B-1OOTA
confEVID 1BU1B-1OOTA
pdbIDA 1BU1
pdbIDB 1OOT
pdbChainA B
pdbChainB A
identity 0.372900009155273
indelSize 2
alignment <alignment>
<seq1>-IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVARVD</seq1>
<seq2>SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV-</seq2>
<ss_1>- EEE EEEE EEEEE---EEEEEE EEEEEEE </ss_1>
<ss_2> EEE EEEE EEEEEEE-- EEEEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BU1B</entryIDChain>
<sequence>EESGE---WWKAR</sequence>
<secondary-structure>EEEEE---EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 700 CA GLU B 109 14.189 45.006 18.394 1.00 48.05 C </line>
<line>ATOM 709 CA GLU B 110 12.343 42.800 15.897 1.00 52.97 C </line>
<line>ATOM 718 CA SER B 111 12.515 45.281 13.022 1.00 54.97 C </line>
<line>ATOM 724 CA GLY B 112 12.252 43.398 9.725 1.00 51.21 C </line>
<line>ATOM 728 CA GLU B 113 14.818 40.937 8.406 1.00 44.53 C </line>
<line>ATOM 737 CA TRP B 114 17.438 42.476 10.682 1.00 32.79 C </line>
<line>ATOM 751 CA TRP B 115 17.050 42.443 14.446 1.00 29.70 C </line>
<line>ATOM 765 CA LYS B 116 18.977 44.351 17.090 1.00 26.41 C </line>
<line>ATOM 774 CA ALA B 117 20.302 42.007 19.752 1.00 23.91 C </line>
<line>ATOM 779 CA ARG B 118 22.751 41.543 22.568 1.00 22.51 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ALA LYS TRP TRP GLU GLY SER GLU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 10.14 6.94 5.01 5.51 8.74 10.80 9.03 5.63 3.81 </line>
<line>GLU CA 12.43 8.88 6.92 4.94 7.30 8.11 6.20 3.80 </line>
<line>SER CA 14.49 10.80 7.69 5.54 6.13 6.74 3.81 </line>
<line>GLY CA 16.69 12.93 10.02 6.80 5.35 3.79 </line>
<line>GLU CA 16.24 12.65 10.22 6.61 3.80 </line>
<line>TRP CA 13.05 9.52 6.85 3.78 </line>
<line>TRP CA 9.96 6.24 3.79 </line>
<line>LYS CA 7.22 3.79 </line>
<line>ALA CA 3.76 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 223</line>
<line>GLU CA 225</line>
<line>SER CA 170</line>
<line>GLY CA 157</line>
<line>GLU CA 200</line>
<line>TRP CA 278</line>
<line>TRP CA 315</line>
<line>LYS CA 327</line>
<line>ALA CA 360</line>
<line>ARG CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>KKSDSQNDWWTGR</sequence>
<secondary-structure> EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 257 CA LYS A 30 30.764 11.959 -5.173 1.00 13.36 C </line>
<line>ATOM 266 CA LYS A 31 33.102 11.629 -2.265 1.00 15.36 C </line>
<line>ATOM 275 CA SER A 32 36.224 13.447 -1.131 1.00 14.67 C </line>
<line>ATOM 281 CA ASP A 33 39.287 12.345 0.823 1.00 17.32 C </line>
<line>ATOM 289 CA SER A 34 37.729 13.385 4.149 1.00 14.38 C </line>
<line>ATOM 295 CA GLN A 35 34.703 12.088 5.911 1.00 15.60 C </line>
<line>ATOM 304 CA ASN A 36 34.223 15.582 7.383 1.00 13.71 C </line>
<line>ATOM 312 CA ASP A 37 33.352 17.118 4.040 1.00 12.06 C </line>
<line>ATOM 321 CA ATRP A 38 30.044 17.295 2.367 0.50 9.55 C </line>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLY THR TRP TRP ASP ASN GLN SER ASP SER LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 10.25 6.85 4.91 5.82 9.27 10.87 13.52 11.76 11.72 10.43 6.95 3.75 </line>
<line>LYS CA 12.39 8.74 6.59 5.04 7.93 8.36 10.49 8.34 8.10 6.95 3.79 </line>
<line>SER CA 15.88 12.15 9.42 6.84 8.08 6.96 9.00 7.33 5.49 3.80 </line>
<line>ASP CA 19.03 15.36 12.94 10.00 10.60 8.27 8.90 6.85 3.82 </line>
<line>SER CA 18.75 15.18 12.82 9.26 8.80 5.75 5.25 3.73 </line>
<line>GLN CA 16.77 13.51 11.81 8.22 7.83 5.53 3.82 </line>
<line>ASN CA 17.98 14.78 12.61 8.85 6.75 3.78 </line>
<line>ASP CA 16.11 12.69 9.86 6.20 3.71 </line>
<line>TRP CA 12.97 9.73 6.86 3.79 </line>
<line>TRP CA 10.23 6.63 3.80 </line>
<line>THR CA 7.27 3.77 </line>
<line>GLY CA 3.76 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>LYS CA 246</line>
<line>LYS CA 254</line>
<line>SER CA 192</line>
<line>ASP CA 140</line>
<line>SER CA 167</line>
<line>GLN CA 237</line>
<line>ASN CA 195</line>
<line>ASP CA 208</line>
<line>TRP CA 284</line>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
</n14>
</entryChain>
<parallel>
<x>-18.01099967956543</x>
<y>29.775999069213867</y>
<z>13.968000411987305</z>
</parallel>
<rotation>
<x>-0.7390000224113464</x>
<y>0.24300000071525574</y>
<z>-0.6290000081062317</z>
<x>0.6060000061988831</x>
<y>0.6480000019073486</y>
<z>-0.460999995470047</z>
<x>0.29600000381469727</x>
<y>-0.722000002861023</y>
<z>-0.6259999871253967</z>
</rotation>
<rmsd>1.83514404296875</rmsd>
<dmax>3.021552085876465</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>WTGRV--NGREG</sequence>
<secondary-structure>EEEEE-- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
<line>ATOM 384 CA VAL A 43 18.123 8.330 -1.442 1.00 10.45 C </line>
<line>ATOM 391 CA ASN A 44 14.332 8.377 -1.332 1.00 13.67 C </line>
<line>ATOM 399 CA GLY A 45 14.145 9.895 -4.799 1.00 11.79 C </line>
<line>ATOM 403 CA ARG A 46 16.115 12.989 -3.764 1.00 12.10 C </line>
<line>ATOM 414 CA GLU A 47 19.630 14.058 -4.665 1.00 12.05 C </line>
<line>ATOM 423 CA GLY A 48 21.940 16.436 -2.885 1.00 12.85 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU ARG GLY ASN VAL ARG GLY THR TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.36 10.94 14.01 16.74 16.42 13.02 10.23 6.63 3.80 </line>
<line>THR CA 5.59 7.58 10.95 13.62 13.92 10.60 7.27 3.77 </line>
<line>GLY CA 5.72 5.83 8.51 10.53 10.56 7.04 3.76 </line>
<line>ARG CA 6.41 4.32 5.55 6.87 7.04 3.77 </line>
<line>VAL CA 9.08 6.74 5.58 5.44 3.79 </line>
<line>ASN CA 11.19 8.45 5.51 3.79 </line>
<line>GLY CA 10.35 6.89 3.81 </line>
<line>ARG CA 6.83 3.78 </line>
<line>GLU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
<line>VAL CA 274</line>
<line>ASN CA 200</line>
<line>GLY CA 152</line>
<line>ARG CA 213</line>
<line>GLU CA 243</line>
<line>GLY CA 271</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BU1B</entryIDChain>
<sequence>WKARSLATRKEG</sequence>
<secondary-structure>EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 751 CA TRP B 115 17.050 42.443 14.446 1.00 29.70 C </line>
<line>ATOM 765 CA LYS B 116 18.977 44.351 17.090 1.00 26.41 C </line>
<line>ATOM 774 CA ALA B 117 20.302 42.007 19.752 1.00 23.91 C </line>
<line>ATOM 779 CA ARG B 118 22.751 41.543 22.568 1.00 22.51 C </line>
<line>ATOM 790 CA SER B 119 25.069 38.624 22.946 1.00 21.80 C </line>
<line>ATOM 796 CA LEU B 120 24.614 37.113 26.425 1.00 22.48 C </line>
<line>ATOM 804 CA ALA B 121 28.247 35.996 26.338 1.00 23.85 C </line>
<line>ATOM 809 CA THR B 122 30.093 39.205 25.365 1.00 25.20 C </line>
<line>ATOM 816 CA ARG B 123 27.247 41.692 25.999 1.00 25.95 C </line>
<line>ATOM 827 CA LYS B 124 28.048 43.112 22.561 1.00 26.71 C </line>
<line>ATOM 836 CA GLU B 125 25.194 44.718 20.623 1.00 26.07 C </line>
<line>ATOM 845 CA GLY B 126 24.302 44.828 16.970 1.00 24.75 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU LYS ARG THR ALA LEU SER ARG ALA LYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.04 10.47 13.68 15.43 17.32 17.56 15.14 12.29 9.96 6.24 3.79 </line>
<line>LYS CA 5.35 7.16 10.67 12.44 14.78 15.53 13.09 10.21 7.22 3.79 </line>
<line>ALA CA 5.63 5.66 8.31 9.35 11.63 11.94 9.33 6.66 3.76 </line>
<line>ARG CA 6.67 4.45 5.52 5.66 8.20 8.67 6.16 3.75 </line>
<line>SER CA 8.65 6.52 5.40 4.85 5.61 5.34 3.82 </line>
<line>LEU CA 12.21 9.58 7.92 5.30 5.96 3.80 </line>
<line>ALA CA 13.47 10.87 8.06 5.79 3.83 </line>
<line>THR CA 11.65 8.77 5.23 3.83 </line>
<line>ARG CA 10.00 6.50 3.80 </line>
<line>LYS CA 6.95 3.81 </line>
<line>GLU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 315</line>
<line>LYS CA 327</line>
<line>ALA CA 360</line>
<line>ARG CA 300</line>
<line>SER CA 295</line>
<line>LEU CA 222</line>
<line>ALA CA 182</line>
<line>THR CA 163</line>
<line>ARG CA 182</line>
<line>LYS CA 225</line>
<line>GLU CA 275</line>
<line>GLY CA 321</line>
</n14>
</entryChain>
<parallel>
<x>-3.134000062942505</x>
<y>-30.44499969482422</y>
<z>-23.87700080871582</z>
</parallel>
<rotation>
<x>-0.9100000262260437</x>
<y>0.296999990940094</y>
<z>0.2879999876022339</z>
<x>0.026000000536441803</x>
<y>0.7350000143051147</y>
<z>-0.6779999732971191</z>
<x>-0.4129999876022339</x>
<y>-0.6100000143051147</y>
<z>-0.6769999861717224</z>
</rotation>
<rmsd>0.8110269904136658</rmsd>
<dmax>1.4759520292282104</dmax>
</indel>