NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B98A-1HCFB
confEVID 1B98A-1HCFB
pdbIDA 1B98
pdbIDB 1HCF
pdbChainA A
pdbChainB B
identity 0.867299973964691
indelSize 2
alignment <alignment>
<seq1>--------ELAVCDAVSGWVTDRRTAVDLRGREVEVLGEV-----LRQYFFETRCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRALTA-----VGWRWIRIDTACVCTLLSRT--</seq1>
<seq2>TAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAASPLRQYFFETRCKA-DAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLL-SRTG</seq2>
<ss_1>-------- EEEEEEE EEEEE EEEE ----- EEEEEEE HHHH EEEEEEEEEEEEEE-----EEEEEEEE EEEEE --</ss_1>
<ss_2> EEEEEEE EEEEE EEEE EEEEEEE - EEEEEEEEEEEEEEE EEEEEEEEE EEEEEEE- </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B98</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B98A</entryIDChain>
<sequence>RALTA-----VGWRW</sequence>
<secondary-structure>EEEEE-----EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA ARG A 98 7.420 5.292 21.763 1.00 37.01 C </line>
<line>ATOM 599 CA ALA A 99 3.891 6.497 22.545 1.00 35.92 C </line>
<line>ATOM 604 CA LEU A 100 2.219 8.716 25.080 1.00 41.27 C </line>
<line>ATOM 612 CA THR A 101 -0.315 6.312 26.573 1.00 41.94 C </line>
<line>ATOM 619 CA ALA A 102 -2.394 5.575 29.655 1.00 49.60 C </line>
<line>ATOM 624 CA VAL A 108 -0.331 8.252 31.738 1.00 75.85 C </line>
<line>ATOM 631 CA GLY A 109 3.161 7.977 30.211 1.00 66.25 C </line>
<line>ATOM 635 CA TRP A 110 5.572 6.973 27.405 1.00 57.93 C </line>
<line>ATOM 649 CA ARG A 111 5.277 3.337 26.503 1.00 50.84 C </line>
<line>ATOM 660 CA TRP A 112 6.647 1.281 23.700 1.00 37.03 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ARG TRP GLY VAL ALA THR LEU ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 4.52 5.56 6.17 9.83 12.97 12.60 9.17 7.06 3.81 </line>
<line>ALA CA 6.01 5.25 5.16 7.84 10.27 9.53 5.83 3.76 </line>
<line>LEU CA 8.76 6.35 4.44 5.27 7.14 7.22 3.80 </line>
<line>THR CA 9.06 6.33 5.98 5.30 5.52 3.79 </line>
<line>ALA CA 11.65 8.59 8.39 6.08 3.97 </line>
<line>VAL CA 12.72 9.11 7.43 3.82 </line>
<line>GLY CA 9.97 6.31 3.83 </line>
<line>TRP CA 6.88 3.76 </line>
<line>ARG CA 3.74 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ARG CA 291</line>
<line>ALA CA 327</line>
<line>LEU CA 273</line>
<line>THR CA 289</line>
<line>ALA CA 224</line>
<line>VAL CA 166</line>
<line>GLY CA 190</line>
<line>TRP CA 236</line>
<line>ARG CA 272</line>
<line>TRP CA 286</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HCF</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1HCFB</entryIDChain>
<sequence>RALTADAQGRVGWRW</sequence>
<secondary-structure>EEEEEE EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1565 CA ARG B 98 2.652 -6.199 38.167 1.00 23.17 C </line>
<line>ATOM 1576 CA ALA B 99 1.105 -5.689 41.597 1.00 21.65 C </line>
<line>ATOM 1581 CA LEU B 100 -0.627 -7.688 44.337 1.00 24.99 C </line>
<line>ATOM 1589 CA THR B 101 -4.147 -6.319 44.165 1.00 24.90 C </line>
<line>ATOM 1596 CA ALA B 102 -7.806 -6.757 45.006 1.00 28.80 C </line>
<line>ATOM 1601 CA ASP B 103 -10.634 -6.148 42.537 1.00 33.92 C </line>
<line>ATOM 1609 CA ALA B 104 -14.145 -4.800 43.174 1.00 37.38 C </line>
<line>ATOM 1614 CA GLN B 105 -15.188 -8.321 44.193 1.00 39.24 C </line>
<line>ATOM 1623 CA GLY B 106 -12.215 -8.341 46.541 1.00 34.76 C </line>
<line>ATOM 1627 CA ARG B 107 -10.451 -11.179 44.730 1.00 35.64 C </line>
<line>ATOM 1638 CA VAL B 108 -6.715 -11.018 45.465 1.00 35.59 C </line>
<line>ATOM 1645 CA GLY B 109 -4.071 -11.557 42.815 1.00 35.37 C </line>
<line>ATOM 1649 CA TRP B 110 -1.164 -10.132 40.827 1.00 28.77 C </line>
<line>ATOM 1663 CA ARG B 111 -2.363 -7.641 38.249 1.00 25.35 C </line>
<line>ATOM 1674 CA TRP B 112 -0.817 -5.329 35.722 1.00 24.57 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ARG TRP GLY VAL ARG GLY GLN ALA ASP ALA THR LEU ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 4.33 5.22 6.09 9.77 12.82 15.48 17.20 18.95 17.58 13.99 12.51 9.07 7.14 3.80 </line>
<line>ALA CA 6.19 5.20 5.05 7.92 10.22 13.17 14.45 16.71 15.36 11.79 9.60 5.88 3.81 </line>
<line>LEU CA 8.93 6.33 4.31 5.40 7.03 10.43 11.81 14.58 13.87 10.28 7.27 3.78 </line>
<line>THR CA 9.13 6.32 5.88 5.41 5.51 7.98 8.65 11.22 10.16 6.69 3.78 </line>
<line>ALA CA 11.71 8.72 8.54 6.46 4.42 5.16 4.93 7.59 6.88 3.80 </line>
<line>ASP CA 11.98 9.44 10.42 8.51 6.90 5.49 4.83 5.31 3.81 </line>
<line>ALA CA 15.28 13.08 14.23 12.14 9.96 7.53 5.25 3.81 </line>
<line>GLN CA 16.95 14.15 14.54 11.66 8.98 5.56 3.79 </line>
<line>GLY CA 16.00 12.90 12.57 9.52 6.21 3.80 </line>
<line>ARG CA 14.43 10.95 10.13 6.67 3.81 </line>
<line>VAL CA 12.73 9.08 7.29 3.78 </line>
<line>GLY CA 9.98 6.25 3.80 </line>
<line>TRP CA 7.02 3.78 </line>
<line>ARG CA 3.76 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ARG CA 313</line>
<line>ALA CA 357</line>
<line>LEU CA 318</line>
<line>THR CA 338</line>
<line>ALA CA 267</line>
<line>ASP CA 226</line>
<line>ALA CA 176</line>
<line>GLN CA 126</line>
<line>GLY CA 156</line>
<line>ARG CA 161</line>
<line>VAL CA 219</line>
<line>GLY CA 244</line>
<line>TRP CA 278</line>
<line>ARG CA 309</line>
<line>TRP CA 295</line>
</n14>
</entryChain>
<parallel>
<x>5.0</x>
<y>15.119000434875488</y>
<z>-15.925999641418457</z>
</parallel>
<rotation>
<x>0.527999997138977</x>
<y>0.47600001096725464</y>
<z>-0.703000009059906</z>
<x>-0.5019999742507935</x>
<y>-0.49300000071525574</y>
<z>-0.7110000252723694</z>
<x>-0.6850000023841858</x>
<y>0.7279999852180481</y>
<z>-0.020999999716877937</z>
</rotation>
<rmsd>0.1940779983997345</rmsd>
<dmax>0.31296300888061523</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1HCF</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1HCFB</entryIDChain>
<sequence>TRCKA-DAEEG</sequence>
<secondary-structure>EEEE - </secondary-structure>
<atom-coordinate>
<line>ATOM 1292 CA THR B 59 8.553 9.221 37.674 1.00 35.79 C </line>
<line>ATOM 1299 CA ARG B 60 6.510 12.330 36.897 1.00 42.15 C </line>
<line>ATOM 1310 CA CYS B 61 6.954 15.634 35.068 1.00 43.20 C </line>
<line>ATOM 1316 CA LYS B 62 8.494 18.418 37.160 1.00 49.97 C </line>
<line>ATOM 1322 CA ALA B 63 5.412 20.086 38.676 1.00 60.08 C </line>
<line>ATOM 1327 CA ASP B 64 4.910 23.668 37.532 1.00 65.76 C </line>
<line>ATOM 1335 CA ALA B 66 1.666 27.454 38.072 1.00 96.27 C </line>
<line>ATOM 1340 CA GLU B 67 3.444 30.370 36.380 1.00 95.66 C </line>
<line>ATOM 1349 CA GLU B 68 3.265 29.528 32.652 1.00 91.98 C </line>
<line>ATOM 1358 CA GLY B 69 6.138 30.418 30.336 1.00 88.55 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU GLU ALA ASP ALA LYS CYS ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 22.56 21.58 21.80 19.49 14.90 11.35 9.21 7.10 3.80 </line>
<line>ARG CA 19.24 18.01 18.31 15.92 11.47 8.03 6.41 3.80 </line>
<line>CYS CA 15.54 14.58 15.20 13.29 8.65 5.93 3.81 </line>
<line>LYS CA 14.00 13.08 13.00 11.36 6.37 3.82 </line>
<line>ALA CA 13.30 11.40 10.72 8.29 3.79 </line>
<line>ASP CA 9.94 7.80 6.96 5.01 </line>
<line>ALA CA 9.41 6.02 3.81 </line>
<line>GLU CA 6.62 3.83 </line>
<line>GLU CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 255</line>
<line>ARG CA 267</line>
<line>CYS CA 268</line>
<line>LYS CA 239</line>
<line>ALA CA 200</line>
<line>ASP CA 164</line>
<line>ALA CA 90</line>
<line>GLU CA 84</line>
<line>GLU CA 123</line>
<line>GLY CA 144</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1B98</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B98A</entryIDChain>
<sequence>TRCKADNAEEG</sequence>
<secondary-structure>EEEE HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 308 CA THR A 59 3.199 0.105 7.102 1.00 35.79 C </line>
<line>ATOM 315 CA ARG A 60 1.078 -2.778 5.910 1.00 35.97 C </line>
<line>ATOM 326 CA CYS A 61 0.787 -5.130 2.951 1.00 28.37 C </line>
<line>ATOM 332 CA LYS A 62 -1.135 -4.201 -0.240 1.00 30.54 C </line>
<line>ATOM 341 CA ALA A 63 -4.522 -5.893 -0.432 1.00 32.93 C </line>
<line>ATOM 346 CA ASP A 64 -5.429 -8.014 -3.505 1.00 40.59 C </line>
<line>ATOM 354 CA ASN A 65 -6.796 -6.109 -6.437 1.00 45.38 C </line>
<line>ATOM 362 CA ALA A 66 -9.257 -7.756 -8.774 1.00 46.68 C </line>
<line>ATOM 367 CA GLU A 67 -7.980 -6.139 -11.970 1.00 56.12 C </line>
<line>ATOM 376 CA GLU A 68 -4.374 -6.939 -11.171 1.00 48.05 C </line>
<line>ATOM 381 CA GLY A 69 -4.037 -10.109 -9.068 1.00 39.31 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU GLU ALA ASN ASP ALA LYS CYS ARG THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 20.45 21.00 22.97 21.66 17.94 15.90 12.34 9.55 7.10 3.77 </line>
<line>ARG CA 17.44 18.41 20.32 18.63 15.02 12.59 9.02 6.69 3.79 </line>
<line>CYS CA 13.88 15.14 17.34 15.66 12.11 9.41 6.34 3.84 </line>
<line>LYS CA 11.01 11.72 13.72 12.31 8.61 6.61 3.79 </line>
<line>ALA CA 9.62 10.79 12.05 9.77 6.42 3.84 </line>
<line>ASP CA 6.11 7.81 9.04 6.52 3.75 </line>
<line>ASN CA 5.53 5.38 5.66 3.77 </line>
<line>ALA CA 5.73 5.50 3.80 </line>
<line>GLU CA 6.30 3.78 </line>
<line>GLU CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 262</line>
<line>ARG CA 276</line>
<line>CYS CA 286</line>
<line>LYS CA 255</line>
<line>ALA CA 202</line>
<line>ASP CA 167</line>
<line>ASN CA 121</line>
<line>ALA CA 81</line>
<line>GLU CA 70</line>
<line>GLU CA 98</line>
<line>GLY CA 135</line>
</n14>
</entryChain>
<parallel>
<x>8.821000099182129</x>
<y>24.385000228881836</y>
<z>38.66899871826172</z>
</parallel>
<rotation>
<x>0.5920000076293945</x>
<y>-0.36800000071525574</y>
<z>-0.7170000076293945</z>
<x>0.753000020980835</x>
<y>-0.06300000101327896</y>
<z>0.6549999713897705</z>
<x>-0.28600001335144043</x>
<y>-0.9279999732971191</y>
<z>0.23999999463558197</z>
</rotation>
<rmsd>1.875087022781372</rmsd>
<dmax>2.2654829025268555</dmax>
</indel>