NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1B9OA-1IOTA
confEVID 1B9OA-1IOTA
pdbIDA 1B9O
pdbIDB 1IOT
pdbChainA A
pdbChainB A
identity 0.333299994468689
indelSize 2
alignment <alignment>
<seq1>KQFTKCELSQLLKDI--DGYGGIALPELICTMFHTSGYDTQAIVEND-ESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILD-IKGI----DYWLAHKALCTE-KLEQWLCEKL-</seq1>
<seq2>KVFGRCELAAALKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRN----RCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHHHGGG-- GGG HHHHHHHHHH EEE - EEEEE EE GGGGG HHHHHHHHHHHH- GG----HHHH - GGGG -</ss_1>
<ss_2> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH---- GGGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1B9O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B9OA</entryIDChain>
<sequence>LLKDI--DGYGG</sequence>
<secondary-structure>HHGGG-- GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 97 CA LEU A 11 -5.954 26.151 38.229 1.00 28.15 C </line>
<line>ATOM 105 CA LEU A 12 -6.683 25.035 34.693 1.00 28.18 C </line>
<line>ATOM 113 CA LYS A 13 -9.994 23.307 35.361 1.00 37.20 C </line>
<line>ATOM 122 CA ASP A 14 -11.934 25.941 33.500 1.00 38.62 C </line>
<line>ATOM 130 CA ILE A 15 -9.878 25.703 30.365 1.00 31.19 C </line>
<line>ATOM 138 CA ASP A 16 -10.851 22.075 29.857 1.00 29.92 C </line>
<line>ATOM 146 CA GLY A 17 -12.264 21.811 26.339 1.00 29.95 C </line>
<line>ATOM 150 CA TYR A 18 -10.979 25.166 25.162 1.00 25.74 C </line>
<line>ATOM 162 CA GLY A 19 -10.112 24.808 21.493 1.00 30.37 C </line>
<line>ATOM 166 CA GLY A 20 -11.243 21.183 21.778 1.00 30.97 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLY TYR GLY ASP ILE ASP LYS LEU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 17.98 17.30 14.03 14.14 10.52 8.80 7.63 5.71 3.78 </line>
<line>LEU CA 14.23 13.64 10.46 10.55 7.04 5.42 5.46 3.79 </line>
<line>LYS CA 13.80 13.95 10.41 9.42 5.70 5.54 3.76 </line>
<line>ASP CA 12.67 12.20 8.43 8.27 5.42 3.76 </line>
<line>ILE CA 9.80 8.92 5.35 6.09 3.79 </line>
<line>ASP CA 8.14 8.83 5.62 3.80 </line>
<line>GLY CA 4.72 6.09 3.78 </line>
<line>TYR CA 5.23 3.79 </line>
<line>GLY CA 3.81 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>LEU CA 297</line>
<line>LEU CA 351</line>
<line>LYS CA 260</line>
<line>ASP CA 208</line>
<line>ILE CA 280</line>
<line>ASP CA 258</line>
<line>GLY CA 197</line>
<line>TYR CA 232</line>
<line>GLY CA 225</line>
<line>GLY CA 186</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>ALKRHGLDNYRG</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 77 CA ALA A 11 -9.552 14.878 12.175 1.00 23.02 C </line>
<line>ATOM 82 CA LEU A 12 -9.246 17.726 14.705 1.00 24.60 C </line>
<line>ATOM 90 CA LYS A 13 -12.917 18.621 14.262 1.00 26.04 C </line>
<line>ATOM 99 CA ARG A 14 -13.981 14.989 14.746 1.00 28.71 C </line>
<line>ATOM 110 CA HIS A 15 -11.918 14.955 17.924 1.00 27.60 C </line>
<line>ATOM 120 CA GLY A 16 -13.833 17.928 19.372 1.00 25.51 C </line>
<line>ATOM 124 CA LEU A 17 -11.291 20.689 18.806 1.00 28.72 C </line>
<line>ATOM 132 CA ASP A 18 -13.422 23.093 16.733 1.00 31.14 C </line>
<line>ATOM 140 CA ASN A 19 -14.078 25.916 19.176 1.00 28.29 C </line>
<line>ATOM 148 CA TYR A 20 -12.689 24.083 22.201 1.00 22.87 C </line>
<line>ATOM 160 CA ARG A 21 -12.135 26.727 24.912 1.00 26.71 C </line>
<line>ATOM 171 CA GLY A 22 -13.140 29.376 22.386 1.00 20.87 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ARG TYR ASN ASP LEU GLY HIS ARG LYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 18.09 17.59 13.97 13.83 10.16 8.99 8.91 6.22 5.12 5.45 3.82 </line>
<line>LEU CA 14.49 13.91 10.41 10.51 7.10 5.46 6.55 5.02 5.47 3.80 </line>
<line>LYS CA 13.48 13.41 9.64 8.87 5.13 5.25 5.24 5.28 3.82 </line>
<line>ARG CA 16.31 15.64 11.83 11.79 8.36 7.50 5.48 3.79 </line>
<line>HIS CA 15.14 13.69 10.11 11.24 8.36 5.84 3.82 </line>
<line>GLY CA 11.86 10.54 6.87 7.99 5.81 3.80 </line>
<line>LEU CA 9.58 8.63 5.00 5.94 3.82 </line>
<line>ASP CA 8.46 9.04 5.61 3.79 </line>
<line>ASN CA 4.81 6.11 3.80 </line>
<line>TYR CA 5.32 3.83 </line>
<line>ARG CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ALA CA 321</line>
<line>LEU CA 397</line>
<line>LYS CA 306</line>
<line>ARG CA 240</line>
<line>HIS CA 266</line>
<line>GLY CA 267</line>
<line>LEU CA 349</line>
<line>ASP CA 305</line>
<line>ASN CA 252</line>
<line>TYR CA 270</line>
<line>ARG CA 240</line>
<line>GLY CA 222</line>
</n14>
</entryChain>
<parallel>
<x>2.4079999923706055</x>
<y>5.116000175476074</y>
<z>15.197999954223633</z>
</parallel>
<rotation>
<x>0.9950000047683716</x>
<y>0.05700000002980232</y>
<z>-0.08299999684095383</z>
<x>-0.004000000189989805</x>
<y>-0.8009999990463257</y>
<z>-0.5989999771118164</z>
<x>-0.10100000351667404</x>
<y>0.5960000157356262</y>
<z>-0.796999990940094</z>
</rotation>
<rmsd>2.0168049335479736</rmsd>
<dmax>4.099109172821045</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1B9O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1B9OA</entryIDChain>
<sequence>IVEND-ESTEY</sequence>
<secondary-structure>EE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 336 CA ILE A 41 13.403 29.495 29.777 1.00 18.66 C </line>
<line>ATOM 344 CA VAL A 42 14.428 27.611 26.595 1.00 18.57 C </line>
<line>ATOM 351 CA GLU A 43 16.817 29.516 24.342 1.00 27.22 C </line>
<line>ATOM 360 CA ASN A 44 16.928 28.627 20.674 1.00 40.56 C </line>
<line>ATOM 368 CA ASP A 45 19.066 30.153 17.923 1.00 40.42 C </line>
<line>ATOM 376 CA GLU A 46 16.712 32.958 16.954 1.00 30.89 C </line>
<line>ATOM 385 CA SER A 47 14.075 33.013 19.676 1.00 19.49 C </line>
<line>ATOM 391 CA THR A 48 13.425 32.221 23.329 1.00 14.32 C </line>
<line>ATOM 398 CA GLU A 49 10.411 30.536 24.925 1.00 13.93 C </line>
<line>ATOM 407 CA TYR A 50 9.244 31.568 28.350 1.00 11.49 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER GLU ASP ASN GLU VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.86 5.79 7.00 10.72 13.69 13.15 9.80 6.42 3.84 </line>
<line>VAL CA 6.75 5.24 5.74 8.79 11.26 10.16 6.51 3.80 </line>
<line>GLU CA 8.81 6.51 4.46 6.44 8.15 6.83 3.78 </line>
<line>ASN CA 11.25 8.01 5.68 5.33 5.71 3.80 </line>
<line>ASP CA 14.39 11.14 8.08 6.01 3.79 </line>
<line>GLU CA 13.70 10.45 7.21 3.79 </line>
<line>SER CA 10.03 6.86 3.79 </line>
<line>THR CA 6.57 3.80 </line>
<line>GLU CA 3.76 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 292</line>
<line>VAL CA 258</line>
<line>GLU CA 205</line>
<line>ASN CA 167</line>
<line>ASP CA 124</line>
<line>GLU CA 181</line>
<line>SER CA 247</line>
<line>THR CA 306</line>
<line>GLU CA 396</line>
<line>TYR CA 429</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1IOTA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 10.567 16.020 17.757 1.00 17.61 C </line>
<line>ATOM 340 CA ASN A 44 12.666 18.958 18.875 1.00 21.79 C </line>
<line>ATOM 348 CA ARG A 45 14.957 19.103 21.865 1.00 22.74 C </line>
<line>ATOM 359 CA ASN A 46 15.072 22.180 24.046 1.00 28.17 C </line>
<line>ATOM 367 CA THR A 47 17.952 23.861 25.865 1.00 32.18 C </line>
<line>ATOM 374 CA ASP A 48 16.595 22.893 29.273 1.00 25.42 C </line>
<line>ATOM 382 CA GLY A 49 16.972 19.252 28.213 1.00 22.61 C </line>
<line>ATOM 386 CA SER A 50 13.278 18.612 27.661 1.00 19.22 C </line>
<line>ATOM 392 CA THR A 51 11.882 17.623 24.228 1.00 17.83 C </line>
<line>ATOM 399 CA ASP A 52 8.739 18.552 22.236 1.00 16.87 C </line>
<line>ATOM 407 CA TYR A 53 6.739 15.734 20.639 1.00 17.02 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.80 5.46 6.80 10.59 12.68 14.70 13.48 9.89 6.76 3.78 </line>
<line>ASN CA 6.97 5.18 5.57 8.81 10.29 11.79 10.04 6.55 3.77 </line>
<line>ARG CA 8.97 6.25 4.15 6.05 6.66 8.48 6.90 3.77 </line>
<line>ASN CA 11.07 7.52 5.57 5.39 5.44 5.49 3.80 </line>
<line>THR CA 14.80 11.24 8.86 7.25 5.26 3.79 </line>
<line>ASP CA 14.93 11.41 8.69 5.65 3.81 </line>
<line>GLY CA 13.21 10.20 6.67 3.79 </line>
<line>SER CA 10.02 7.07 3.84 </line>
<line>THR CA 6.55 3.84 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 296</line>
<line>ASN CA 274</line>
<line>ARG CA 224</line>
<line>ASN CA 206</line>
<line>THR CA 141</line>
<line>ASP CA 157</line>
<line>GLY CA 189</line>
<line>SER CA 258</line>
<line>THR CA 317</line>
<line>ASP CA 403</line>
<line>TYR CA 431</line>
</n14>
</entryChain>
<parallel>
<x>1.437999963760376</x>
<y>10.998000144958496</y>
<z>-1.1549999713897705</z>
</parallel>
<rotation>
<x>0.9620000123977661</x>
<y>0.23399999737739563</y>
<z>-0.14100000262260437</z>
<x>0.11999999731779099</x>
<y>-0.8240000009536743</y>
<z>-0.5529999732971191</z>
<x>-0.2460000067949295</x>
<y>0.5149999856948853</y>
<z>-0.8209999799728394</z>
</rotation>
<rmsd>0.9036980271339417</rmsd>
<dmax>1.5833189487457275</dmax>
</indel>