NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BU1D-1OOTA
confEVID 1BU1D-1OOTA
pdbIDA 1BU1
pdbIDB 1OOT
pdbChainA D
pdbChainB A
identity 0.372900009155273
indelSize 2
alignment <alignment>
<seq1>-IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVARV</seq1>
<seq2>SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV</seq2>
<ss_1>- EEE EEEE EEEEE---EEEEEE EEEEEEE </ss_1>
<ss_2> EEE EEEE EEEEEEE-- EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1BU1D</entryIDChain>
<sequence>EESGE---WWKAR</sequence>
<secondary-structure>EEEEE---EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1631 CA GLU D 109 16.059 9.257 50.062 1.00 52.08 C </line>
<line>ATOM 1640 CA GLU D 110 14.502 6.775 52.491 1.00 52.17 C </line>
<line>ATOM 1649 CA SER D 111 11.664 8.926 53.843 1.00 47.26 C </line>
<line>ATOM 1655 CA GLY D 112 9.577 6.188 55.494 1.00 41.70 C </line>
<line>ATOM 1659 CA GLU D 113 6.898 4.376 53.470 1.00 35.90 C </line>
<line>ATOM 1668 CA TRP D 114 7.743 6.407 50.311 1.00 26.68 C </line>
<line>ATOM 1682 CA TRP D 115 11.335 6.555 49.013 1.00 27.73 C </line>
<line>ATOM 1696 CA LYS D 116 12.729 8.950 46.420 1.00 27.33 C </line>
<line>ATOM 1705 CA ALA D 117 14.429 7.119 43.577 1.00 26.92 C </line>
<line>ATOM 1710 CA ARG D 118 16.113 7.442 40.213 1.00 24.98 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ALA LYS TRP TRP GLU GLY SER GLU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 10.01 7.02 4.94 5.54 8.79 10.93 9.00 5.81 3.81 </line>
<line>GLU CA 12.40 8.92 6.69 4.71 7.11 8.03 5.80 3.81 </line>
<line>SER CA 14.41 10.78 7.50 5.39 5.85 6.60 3.82 </line>
<line>GLY CA 16.67 12.90 10.00 6.73 5.50 3.82 </line>
<line>GLU CA 16.43 12.73 10.23 6.66 3.85 </line>
<line>TRP CA 13.16 9.52 6.82 3.82 </line>
<line>TRP CA 10.05 6.28 3.80 </line>
<line>LYS CA 7.23 3.78 </line>
<line>ALA CA 3.78 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 223</line>
<line>GLU CA 221</line>
<line>SER CA 173</line>
<line>GLY CA 156</line>
<line>GLU CA 196</line>
<line>TRP CA 277</line>
<line>TRP CA 316</line>
<line>LYS CA 330</line>
<line>ALA CA 359</line>
<line>ARG CA 299</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>KKSDSQNDWWTGR</sequence>
<secondary-structure> EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 257 CA LYS A 30 30.764 11.959 -5.173 1.00 13.36 C </line>
<line>ATOM 266 CA LYS A 31 33.102 11.629 -2.265 1.00 15.36 C </line>
<line>ATOM 275 CA SER A 32 36.224 13.447 -1.131 1.00 14.67 C </line>
<line>ATOM 281 CA ASP A 33 39.287 12.345 0.823 1.00 17.32 C </line>
<line>ATOM 289 CA SER A 34 37.729 13.385 4.149 1.00 14.38 C </line>
<line>ATOM 295 CA GLN A 35 34.703 12.088 5.911 1.00 15.60 C </line>
<line>ATOM 304 CA ASN A 36 34.223 15.582 7.383 1.00 13.71 C </line>
<line>ATOM 312 CA ASP A 37 33.352 17.118 4.040 1.00 12.06 C </line>
<line>ATOM 321 CA ATRP A 38 30.044 17.295 2.367 0.50 9.55 C </line>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLY THR TRP TRP ASP ASN GLN SER ASP SER LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 10.25 6.85 4.91 5.82 9.27 10.87 13.52 11.76 11.72 10.43 6.95 3.75 </line>
<line>LYS CA 12.39 8.74 6.59 5.04 7.93 8.36 10.49 8.34 8.10 6.95 3.79 </line>
<line>SER CA 15.88 12.15 9.42 6.84 8.08 6.96 9.00 7.33 5.49 3.80 </line>
<line>ASP CA 19.03 15.36 12.94 10.00 10.60 8.27 8.90 6.85 3.82 </line>
<line>SER CA 18.75 15.18 12.82 9.26 8.80 5.75 5.25 3.73 </line>
<line>GLN CA 16.77 13.51 11.81 8.22 7.83 5.53 3.82 </line>
<line>ASN CA 17.98 14.78 12.61 8.85 6.75 3.78 </line>
<line>ASP CA 16.11 12.69 9.86 6.20 3.71 </line>
<line>TRP CA 12.97 9.73 6.86 3.79 </line>
<line>TRP CA 10.23 6.63 3.80 </line>
<line>THR CA 7.27 3.77 </line>
<line>GLY CA 3.76 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>LYS CA 246</line>
<line>LYS CA 254</line>
<line>SER CA 192</line>
<line>ASP CA 140</line>
<line>SER CA 167</line>
<line>GLN CA 237</line>
<line>ASN CA 195</line>
<line>ASP CA 208</line>
<line>TRP CA 284</line>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
</n14>
</entryChain>
<parallel>
<x>-21.645000457763672</x>
<y>-6.38100004196167</y>
<z>51.89799880981445</z>
</parallel>
<rotation>
<x>-0.22699999809265137</x>
<y>0.08500000089406967</y>
<z>0.9700000286102295</z>
<x>-0.7129999995231628</x>
<y>0.6639999747276306</y>
<z>-0.22499999403953552</z>
<x>-0.6629999876022339</x>
<y>-0.7429999709129333</y>
<z>-0.09000000357627869</z>
</rotation>
<rmsd>1.7855950593948364</rmsd>
<dmax>2.998634099960327</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>WTGRV--NGREG</sequence>
<secondary-structure>EEEEE-- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
<line>ATOM 384 CA VAL A 43 18.123 8.330 -1.442 1.00 10.45 C </line>
<line>ATOM 391 CA ASN A 44 14.332 8.377 -1.332 1.00 13.67 C </line>
<line>ATOM 399 CA GLY A 45 14.145 9.895 -4.799 1.00 11.79 C </line>
<line>ATOM 403 CA ARG A 46 16.115 12.989 -3.764 1.00 12.10 C </line>
<line>ATOM 414 CA GLU A 47 19.630 14.058 -4.665 1.00 12.05 C </line>
<line>ATOM 423 CA GLY A 48 21.940 16.436 -2.885 1.00 12.85 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU ARG GLY ASN VAL ARG GLY THR TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.36 10.94 14.01 16.74 16.42 13.02 10.23 6.63 3.80 </line>
<line>THR CA 5.59 7.58 10.95 13.62 13.92 10.60 7.27 3.77 </line>
<line>GLY CA 5.72 5.83 8.51 10.53 10.56 7.04 3.76 </line>
<line>ARG CA 6.41 4.32 5.55 6.87 7.04 3.77 </line>
<line>VAL CA 9.08 6.74 5.58 5.44 3.79 </line>
<line>ASN CA 11.19 8.45 5.51 3.79 </line>
<line>GLY CA 10.35 6.89 3.81 </line>
<line>ARG CA 6.83 3.78 </line>
<line>GLU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
<line>VAL CA 274</line>
<line>ASN CA 200</line>
<line>GLY CA 152</line>
<line>ARG CA 213</line>
<line>GLU CA 243</line>
<line>GLY CA 271</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1BU1D</entryIDChain>
<sequence>WKARSLATRKEG</sequence>
<secondary-structure>EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1682 CA TRP D 115 11.335 6.555 49.013 1.00 27.73 C </line>
<line>ATOM 1696 CA LYS D 116 12.729 8.950 46.420 1.00 27.33 C </line>
<line>ATOM 1705 CA ALA D 117 14.429 7.119 43.577 1.00 26.92 C </line>
<line>ATOM 1710 CA ARG D 118 16.113 7.442 40.213 1.00 24.98 C </line>
<line>ATOM 1721 CA SER D 119 15.322 4.680 37.747 1.00 22.49 C </line>
<line>ATOM 1727 CA LEU D 120 18.261 2.948 36.084 1.00 21.57 C </line>
<line>ATOM 1735 CA ALA D 121 15.949 1.916 33.270 1.00 20.14 C </line>
<line>ATOM 1740 CA THR D 122 14.201 5.192 32.411 1.00 17.34 C </line>
<line>ATOM 1747 CA ARG D 123 16.515 7.587 34.313 1.00 17.55 C </line>
<line>ATOM 1758 CA LYS D 124 13.410 9.381 35.661 1.00 19.84 C </line>
<line>ATOM 1767 CA GLU D 125 12.837 10.302 39.295 1.00 21.55 C </line>
<line>ATOM 1776 CA GLY D 126 10.137 10.253 41.868 1.00 23.29 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU LYS ARG THR ALA LEU SER ARG ALA LYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.13 10.52 13.80 15.62 16.90 17.05 15.10 12.10 10.05 6.28 3.80 </line>
<line>LYS CA 5.40 7.25 10.79 12.76 14.58 15.26 13.17 10.01 7.23 3.78 </line>
<line>ALA CA 5.58 5.57 8.30 9.51 11.33 11.65 9.39 6.38 3.78 </line>
<line>ARG CA 6.81 4.44 5.64 5.92 8.34 8.88 6.47 3.79 </line>
<line>SER CA 8.66 6.34 5.49 4.65 5.48 5.30 3.80 </line>
<line>LEU CA 12.36 9.69 8.07 5.26 5.92 3.79 </line>
<line>ALA CA 13.31 10.78 8.24 5.79 3.81 </line>
<line>THR CA 11.47 8.68 5.36 3.84 </line>
<line>ARG CA 10.24 6.76 3.83 </line>
<line>LYS CA 7.07 3.79 </line>
<line>GLU CA 3.73 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 316</line>
<line>LYS CA 330</line>
<line>ALA CA 359</line>
<line>ARG CA 299</line>
<line>SER CA 304</line>
<line>LEU CA 226</line>
<line>ALA CA 204</line>
<line>THR CA 187</line>
<line>ARG CA 193</line>
<line>LYS CA 230</line>
<line>GLU CA 282</line>
<line>GLY CA 321</line>
</n14>
</entryChain>
<parallel>
<x>6.302000045776367</x>
<y>4.064000129699707</y>
<z>-42.45500183105469</z>
</parallel>
<rotation>
<x>0.08399999886751175</x>
<y>-0.6959999799728394</y>
<z>-0.7129999995231628</z>
<x>-0.08399999886751175</x>
<y>0.7080000042915344</y>
<z>-0.7009999752044678</z>
<x>0.9929999709129333</x>
<y>0.11900000274181366</y>
<z>0.0010000000474974513</z>
</rotation>
<rmsd>0.7575700283050537</rmsd>
<dmax>1.2357009649276733</dmax>
</indel>