NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BU1D-1QLYA
confEVID 1BU1D-1QLYA
pdbIDA 1BU1
pdbIDB 1QLY
pdbChainA D
pdbChainB A
identity 0.508800029754639
indelSize 2
alignment <alignment>
<seq1>-IIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARV-</seq1>
<seq2>LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEAE</seq2>
<ss_1>- EEE EEEE EEEE-EEEEEEE EEEEEEE -</ss_1>
<ss_2> EEE EEEEE - EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1BU1D</entryIDChain>
<sequence>LEESG-EWWKA</sequence>
<secondary-structure> EEEE-EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1623 CA LEU D 108 18.026 8.858 46.820 1.00 39.95 C </line>
<line>ATOM 1631 CA GLU D 109 16.059 9.257 50.062 1.00 52.08 C </line>
<line>ATOM 1640 CA GLU D 110 14.502 6.775 52.491 1.00 52.17 C </line>
<line>ATOM 1649 CA SER D 111 11.664 8.926 53.843 1.00 47.26 C </line>
<line>ATOM 1655 CA GLY D 112 9.577 6.188 55.494 1.00 41.70 C </line>
<line>ATOM 1659 CA GLU D 113 6.898 4.376 53.470 1.00 35.90 C </line>
<line>ATOM 1668 CA TRP D 114 7.743 6.407 50.311 1.00 26.68 C </line>
<line>ATOM 1682 CA TRP D 115 11.335 6.555 49.013 1.00 27.73 C </line>
<line>ATOM 1696 CA LYS D 116 12.729 8.950 46.420 1.00 27.33 C </line>
<line>ATOM 1705 CA ALA D 117 14.429 7.119 43.577 1.00 26.92 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS TRP TRP GLU GLY SER GLU GLU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 5.15 5.31 7.41 11.13 13.72 12.40 9.48 6.99 3.81 </line>
<line>GLU CA 7.02 4.94 5.54 8.79 10.93 9.00 5.81 3.81 </line>
<line>GLU CA 8.92 6.69 4.71 7.11 8.03 5.80 3.81 </line>
<line>SER CA 10.78 7.50 5.39 5.85 6.60 3.82 </line>
<line>GLY CA 12.90 10.00 6.73 5.50 3.82 </line>
<line>GLU CA 12.73 10.23 6.66 3.85 </line>
<line>TRP CA 9.52 6.82 3.82 </line>
<line>TRP CA 6.28 3.80 </line>
<line>LYS CA 3.78 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LEU CA 241</line>
<line>GLU CA 223</line>
<line>GLU CA 221</line>
<line>SER CA 173</line>
<line>GLY CA 156</line>
<line>GLU CA 196</line>
<line>TRP CA 277</line>
<line>TRP CA 316</line>
<line>LYS CA 330</line>
<line>ALA CA 359</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1QLY</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1QLYA</entryIDChain>
<sequence>LEESNLPWWRA</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 474 CA LEU A 29 47.499 53.275 -41.846 1.00 0.00 C </line>
<line>ATOM 493 CA GLU A 30 50.257 54.603 -39.541 1.00 0.00 C </line>
<line>ATOM 508 CA GLU A 31 50.786 57.138 -36.725 1.00 0.00 C </line>
<line>ATOM 523 CA SER A 32 53.625 59.151 -35.138 1.00 0.00 C </line>
<line>ATOM 534 CA ASN A 33 54.482 61.536 -32.275 1.00 0.00 C </line>
<line>ATOM 548 CA LEU A 34 52.640 64.366 -34.072 1.00 0.00 C </line>
<line>ATOM 567 CA PRO A 35 48.944 65.186 -34.541 1.00 0.00 C </line>
<line>ATOM 580 CA TRP A 36 48.967 64.354 -38.270 1.00 0.00 C </line>
<line>ATOM 604 CA TRP A 37 49.262 60.615 -39.030 1.00 0.00 C </line>
<line>ATOM 628 CA ARG A 38 49.266 58.498 -42.209 1.00 0.00 C </line>
<line>ATOM 652 CA ALA A 39 45.625 57.603 -42.822 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG TRP TRP PRO LEU ASN SER GLU GLU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 4.82 5.53 8.06 11.73 14.05 14.49 14.44 10.82 7.21 3.83 </line>
<line>GLU CA 6.42 4.82 6.12 9.92 11.78 11.44 10.90 7.17 3.83 </line>
<line>GLU CA 8.00 5.85 4.44 7.60 8.54 7.92 7.27 3.83 </line>
<line>SER CA 11.20 8.33 6.03 7.65 7.66 5.41 3.82 </line>
<line>ASN CA 14.32 11.62 8.59 8.62 7.01 3.83 </line>
<line>LEU CA 13.10 10.58 7.08 5.58 3.81 </line>
<line>PRO CA 11.71 10.18 6.41 3.82 </line>
<line>TRP CA 8.80 7.06 3.83 </line>
<line>TRP CA 6.06 3.82 </line>
<line>ARG CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LEU CA 510</line>
<line>GLU CA 495</line>
<line>GLU CA 503</line>
<line>SER CA 372</line>
<line>ASN CA 276</line>
<line>LEU CA 379</line>
<line>PRO CA 535</line>
<line>TRP CA 665</line>
<line>TRP CA 669</line>
<line>ARG CA 645</line>
<line>ALA CA 725</line>
</n14>
</entryChain>
<parallel>
<x>-38.50199890136719</x>
<y>-52.31399917602539</y>
<z>88.60900115966797</z>
</parallel>
<rotation>
<x>-0.1550000011920929</x>
<y>0.7870000004768372</y>
<z>0.597000002861023</z>
<x>-0.9869999885559082</x>
<y>-0.15000000596046448</y>
<z>-0.057999998331069946</z>
<x>0.04399999976158142</x>
<y>-0.5979999899864197</y>
<z>0.800000011920929</z>
</rotation>
<rmsd>1.254791021347046</rmsd>
<dmax>2.311821937561035</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1QLY</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1QLYA</entryIDChain>
<sequence>RARDK-NGQEG</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 628 CA ARG A 38 49.266 58.498 -42.209 1.00 0.00 C </line>
<line>ATOM 652 CA ALA A 39 45.625 57.603 -42.822 1.00 0.00 C </line>
<line>ATOM 662 CA ARG A 40 43.467 57.176 -45.935 1.00 0.00 C </line>
<line>ATOM 686 CA ASP A 41 40.271 59.254 -45.742 1.00 0.00 C </line>
<line>ATOM 698 CA LYS A 42 36.991 57.745 -46.981 1.00 0.00 C </line>
<line>ATOM 720 CA ASN A 43 37.789 59.293 -50.377 1.00 0.00 C </line>
<line>ATOM 734 CA GLY A 44 40.255 56.426 -50.913 1.00 0.00 C </line>
<line>ATOM 741 CA GLN A 45 43.284 58.727 -50.662 1.00 0.00 C </line>
<line>ATOM 758 CA GLU A 46 46.311 58.148 -48.422 1.00 0.00 C </line>
<line>ATOM 773 CA GLY A 47 47.659 61.326 -46.810 1.00 0.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU GLN GLY ASN LYS ASP ARG ALA ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 5.63 6.89 10.36 12.70 14.11 13.19 9.69 7.02 3.80 </line>
<line>ALA CA 5.82 5.67 8.26 9.78 11.02 9.58 6.32 3.81 </line>
<line>ARG CA 5.96 3.90 4.98 5.97 7.51 6.58 3.82 </line>
<line>ASP CA 7.75 6.70 5.79 5.89 5.26 3.82 </line>
<line>LYS CA 11.25 9.44 7.36 5.28 3.82 </line>
<line>ASN CA 10.69 8.82 5.53 3.82 </line>
<line>GLY CA 9.78 6.77 3.81 </line>
<line>GLN CA 6.38 3.81 </line>
<line>GLU CA 3.81 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ARG CA 645</line>
<line>ALA CA 725</line>
<line>ARG CA 657</line>
<line>ASP CA 698</line>
<line>LYS CA 518</line>
<line>ASN CA 439</line>
<line>GLY CA 402</line>
<line>GLN CA 470</line>
<line>GLU CA 529</line>
<line>GLY CA 623</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1BU1D</entryIDChain>
<sequence>KARSLATRKEG</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1696 CA LYS D 116 12.729 8.950 46.420 1.00 27.33 C </line>
<line>ATOM 1705 CA ALA D 117 14.429 7.119 43.577 1.00 26.92 C </line>
<line>ATOM 1710 CA ARG D 118 16.113 7.442 40.213 1.00 24.98 C </line>
<line>ATOM 1721 CA SER D 119 15.322 4.680 37.747 1.00 22.49 C </line>
<line>ATOM 1727 CA LEU D 120 18.261 2.948 36.084 1.00 21.57 C </line>
<line>ATOM 1735 CA ALA D 121 15.949 1.916 33.270 1.00 20.14 C </line>
<line>ATOM 1740 CA THR D 122 14.201 5.192 32.411 1.00 17.34 C </line>
<line>ATOM 1747 CA ARG D 123 16.515 7.587 34.313 1.00 17.55 C </line>
<line>ATOM 1758 CA LYS D 124 13.410 9.381 35.661 1.00 19.84 C </line>
<line>ATOM 1767 CA GLU D 125 12.837 10.302 39.295 1.00 21.55 C </line>
<line>ATOM 1776 CA GLY D 126 10.137 10.253 41.868 1.00 23.29 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU LYS ARG THR ALA LEU SER ARG ALA LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 5.40 7.25 10.79 12.76 14.58 15.26 13.17 10.01 7.23 3.78 </line>
<line>ALA CA 5.58 5.57 8.30 9.51 11.33 11.65 9.39 6.38 3.78 </line>
<line>ARG CA 6.81 4.44 5.64 5.92 8.34 8.88 6.47 3.79 </line>
<line>SER CA 8.66 6.34 5.49 4.65 5.48 5.30 3.80 </line>
<line>LEU CA 12.36 9.69 8.07 5.26 5.92 3.79 </line>
<line>ALA CA 13.31 10.78 8.24 5.79 3.81 </line>
<line>THR CA 11.47 8.68 5.36 3.84 </line>
<line>ARG CA 10.24 6.76 3.83 </line>
<line>LYS CA 7.07 3.79 </line>
<line>GLU CA 3.73 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>LYS CA 330</line>
<line>ALA CA 359</line>
<line>ARG CA 299</line>
<line>SER CA 304</line>
<line>LEU CA 226</line>
<line>ALA CA 204</line>
<line>THR CA 187</line>
<line>ARG CA 193</line>
<line>LYS CA 230</line>
<line>GLU CA 282</line>
<line>GLY CA 321</line>
</n14>
</entryChain>
<parallel>
<x>26.996000289916992</x>
<y>51.428001403808594</y>
<z>-85.25800323486328</z>
</parallel>
<rotation>
<x>-0.40700000524520874</x>
<y>-0.8939999938011169</y>
<z>0.1860000044107437</z>
<x>0.7170000076293945</x>
<y>-0.4390000104904175</y>
<z>-0.5410000085830688</z>
<x>0.5649999976158142</x>
<y>-0.08699999749660492</y>
<z>0.8199999928474426</z>
</rotation>
<rmsd>0.706030011177063</rmsd>
<dmax>1.1529179811477661</dmax>
</indel>