NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BB4B-2G4NF
confEVID 1BB4B-2G4NF
pdbIDA 1BB4
pdbIDB 2G4N
pdbChainA B
pdbChainB F
identity 0.335900008678436
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACLKRVVRDPQGIRAHVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSEK-LDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH -GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BB4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BB4B</entryIDChain>
<sequence>TNYNAGDRSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1372 CA THR B 43 15.860 7.800 47.148 1.00 13.70 C </line>
<line>ATOM 1379 CA ASN B 44 12.339 7.513 45.740 1.00 10.80 C </line>
<line>ATOM 1387 CA TYR B 45 9.429 5.456 47.050 1.00 21.39 C </line>
<line>ATOM 1399 CA ASN B 46 7.189 3.864 44.430 1.00 19.06 C </line>
<line>ATOM 1407 CA ALA B 47 3.616 3.762 45.712 1.00 21.58 C </line>
<line>ATOM 1412 CA GLY B 48 2.867 1.301 42.937 1.00 27.87 C </line>
<line>ATOM 1416 CA ASP B 49 4.585 -1.787 44.310 1.00 30.60 C </line>
<line>ATOM 1424 CA ARG B 50 5.570 -0.210 47.623 1.00 8.28 C </line>
<line>ATOM 1435 CA SER B 51 9.211 -0.413 46.587 1.00 16.14 C </line>
<line>ATOM 1441 CA THR B 52 11.988 2.164 46.802 1.00 8.65 C </line>
<line>ATOM 1448 CA ASP B 53 14.725 3.186 44.327 1.00 4.85 C </line>
<line>ATOM 1456 CA TYR B 54 18.099 3.598 46.045 1.00 13.18 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.89 5.53 6.85 10.58 13.05 15.07 15.13 12.97 9.90 6.85 3.80 </line>
<line>ASN CA 6.97 5.14 5.46 8.56 10.44 12.19 11.67 9.50 6.45 3.80 </line>
<line>TYR CA 8.92 6.37 4.18 5.89 6.88 9.13 8.79 6.20 3.80 </line>
<line>ASN CA 11.03 7.57 5.62 5.20 5.42 6.22 5.24 3.80 </line>
<line>ALA CA 14.49 11.21 8.59 7.04 4.82 5.80 3.78 </line>
<line>GLY CA 15.71 12.09 9.94 7.52 5.62 3.79 </line>
<line>ASP CA 14.65 11.29 8.75 5.34 3.80 </line>
<line>ARG CA 13.19 10.31 6.89 3.79 </line>
<line>SER CA 9.77 6.96 3.79 </line>
<line>THR CA 6.32 3.83 </line>
<line>ASP CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 297</line>
<line>ASN CA 269</line>
<line>TYR CA 231</line>
<line>ASN CA 214</line>
<line>ALA CA 145</line>
<line>GLY CA 139</line>
<line>ASP CA 181</line>
<line>ARG CA 193</line>
<line>SER CA 261</line>
<line>THR CA 321</line>
<line>ASP CA 413</line>
<line>TYR CA 442</line>
</n14>
</entryChain>
<parallel>
<x>49.479000091552734</x>
<y>11.753000259399414</y>
<z>71.61599731445312</z>
</parallel>
<rotation>
<x>-0.8700000047683716</x>
<y>0.32199999690055847</y>
<z>-0.37299999594688416</z>
<x>0.4790000021457672</x>
<y>0.7319999933242798</y>
<z>-0.48399999737739563</z>
<x>0.11699999868869781</x>
<y>-0.6000000238418579</y>
<z>-0.7910000085830688</z>
</rotation>
<rmsd>0.7713919878005981</rmsd>
<dmax>1.3394720554351807</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BB4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BB4B</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 1786 CA ARG B 98 24.082 -7.016 37.088 1.00 20.51 C </line>
<line>ATOM 1797 CA VAL B 99 20.856 -5.127 36.355 1.00 10.72 C </line>
<line>ATOM 1804 CA VAL B 100 22.140 -4.323 32.882 1.00 22.23 C </line>
<line>ATOM 1811 CA ARG B 101 23.268 -7.896 32.218 1.00 20.24 C </line>
<line>ATOM 1822 CA ASP B 102 19.648 -8.727 31.426 1.00 28.45 C </line>
<line>ATOM 1830 CA PRO B 103 17.926 -8.873 27.992 1.00 37.59 C </line>
<line>ATOM 1837 CA GLN B 104 16.939 -5.186 27.947 1.00 51.73 C </line>
<line>ATOM 1846 CA GLY B 105 20.008 -3.708 29.626 1.00 26.73 C </line>
<line>ATOM 1850 CA ILE B 106 20.070 0.036 30.320 1.00 15.18 C </line>
<line>ATOM 1858 CA ARG B 107 16.616 0.416 28.742 1.00 7.50 C </line>
<line>ATOM 1869 CA ALA B 108 15.403 -0.936 32.083 1.00 31.24 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.72 13.44 10.57 9.12 11.74 11.14 7.39 5.02 5.36 3.81 </line>
<line>VAL CA 8.10 10.33 7.98 6.93 9.28 9.62 6.22 5.53 3.79 </line>
<line>VAL CA 7.58 8.37 5.46 3.94 7.22 7.90 5.27 3.81 </line>
<line>ARG CA 10.50 11.20 8.76 5.91 8.10 6.88 3.80 </line>
<line>ASP CA 8.90 10.00 8.84 5.34 5.66 3.84 </line>
<line>PRO CA 9.28 9.41 9.45 5.80 3.82 </line>
<line>GLN CA 6.13 5.67 6.53 3.80 </line>
<line>GLY CA 5.91 5.41 3.81 </line>
<line>ILE CA 5.08 3.82 </line>
<line>ARG CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 329</line>
<line>VAL CA 385</line>
<line>VAL CA 357</line>
<line>ARG CA 250</line>
<line>ASP CA 220</line>
<line>PRO CA 164</line>
<line>GLN CA 216</line>
<line>GLY CA 307</line>
<line>ILE CA 389</line>
<line>ARG CA 309</line>
<line>ALA CA 328</line>
</n14>
</entryChain>
<parallel>
<x>19.55500030517578</x>
<y>21.8799991607666</y>
<z>94.79299926757812</z>
</parallel>
<rotation>
<x>-0.9290000200271606</x>
<y>0.28299999237060547</y>
<z>-0.2370000034570694</z>
<x>0.335999995470047</x>
<y>0.9139999747276306</y>
<z>-0.22699999809265137</z>
<x>0.15199999511241913</x>
<y>-0.29100000858306885</y>
<z>-0.9449999928474426</z>
</rotation>
<rmsd>1.167343020439148</rmsd>
<dmax>2.5761029720306396</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>LCSEK-LDQWL</sequence>
<secondary-structure> -GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
<line>ATOM 5839 CA LEU F 119 39.177 39.086 118.690 1.00 43.75 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TRP GLN ASP LEU LYS GLU SER CYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.93 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 12.41 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 14.01 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 13.07 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 10.75 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 7.42 5.66 5.44 3.81 </line>
<line>ASP CA 5.57 5.39 3.86 </line>
<line>GLN CA 5.66 3.83 </line>
<line>TRP CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
<line>LEU CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BB4</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BB4B</entryIDChain>
<sequence>RCQNRDVRQYV</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 1929 CA ARG B 115 16.292 11.697 29.074 1.00 12.30 C </line>
<line>ATOM 1940 CA CYS B 116 19.257 10.008 27.350 1.00 13.47 C </line>
<line>ATOM 1946 CA GLN B 117 18.383 7.296 24.821 1.00 11.63 C </line>
<line>ATOM 1955 CA ASN B 118 18.860 8.505 21.244 1.00 17.60 C </line>
<line>ATOM 1963 CA ARG B 119 20.080 11.965 22.347 1.00 6.96 C </line>
<line>ATOM 1974 CA ASP B 120 23.545 13.517 22.218 1.00 15.02 C </line>
<line>ATOM 1982 CA VAL B 121 25.211 12.783 25.552 1.00 8.48 C </line>
<line>ATOM 1989 CA ARG B 122 28.789 13.696 24.705 1.00 7.11 C </line>
<line>ATOM 2000 CA GLN B 123 28.577 16.630 27.097 1.00 33.92 C </line>
<line>ATOM 2009 CA TYR B 124 28.645 14.344 30.149 1.00 8.00 C </line>
<line>ATOM 2021 CA VAL B 125 32.232 13.241 29.549 1.00 13.75 C </line>
</atom-coordinate>
<distance-map>
<line> VAL TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 16.02 12.68 13.39 13.39 9.65 10.15 7.72 8.84 6.47 3.82 </line>
<line>CYS CA 13.55 10.71 11.44 10.56 6.81 7.55 5.43 6.30 3.81 </line>
<line>GLN CA 15.80 13.54 14.01 12.22 8.79 8.49 5.55 3.81 </line>
<line>ASN CA 16.44 14.46 13.95 11.73 8.79 6.93 3.83 </line>
<line>ARG CA 14.18 11.83 10.79 9.19 6.10 3.80 </line>
<line>ASP CA 11.37 9.47 7.67 5.81 3.80 </line>
<line>VAL CA 8.09 5.95 5.34 3.79 </line>
<line>ARG CA 5.96 5.48 3.79 </line>
<line>GLN CA 5.55 3.81 </line>
<line>TYR CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 259</line>
<line>CYS CA 305</line>
<line>GLN CA 273</line>
<line>ASN CA 206</line>
<line>ARG CA 208</line>
<line>ASP CA 198</line>
<line>VAL CA 278</line>
<line>ARG CA 236</line>
<line>GLN CA 236</line>
<line>TYR CA 336</line>
<line>VAL CA 291</line>
</n14>
</entryChain>
<parallel>
<x>22.10099983215332</x>
<y>25.316999435424805</y>
<z>101.58200073242188</z>
</parallel>
<rotation>
<x>-0.7509999871253967</x>
<y>0.3610000014305115</y>
<z>-0.5529999732971191</z>
<x>0.5960000157356262</x>
<y>0.7300000190734863</y>
<z>-0.3330000042915344</z>
<x>0.2840000092983246</x>
<y>-0.5799999833106995</y>
<z>-0.7630000114440918</z>
</rotation>
<rmsd>1.5771390199661255</rmsd>
<dmax>2.3407669067382812</dmax>
</indel>