NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BBDH-1RUPH
confEVID 1BBDH-1RUPH
pdbIDA 1BBD
pdbIDB 1RUP
pdbChainA H
pdbChainB H
identity 0.672699987888336
indelSize 3
alignment <alignment>
<seq1>EVQLQQSGAELVRPGASVKLSCTTSGFNIKD-IYIHWVKQRPEQGLEWIGRLDPANGYTKYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDGYYSYY-DMDYWGPGTSVTVSSAKTTAPSVYPLAPVC-----SSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR---</seq1>
<seq2>RVQLQQSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYS-GFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYCAGLLWYDGGAGSWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPT</seq2>
<ss_1> EEE EEE EEEEEEEE GGG- EEEEEEEE EEEEEEEEE EEEEE EEEEEEE EEEEEEE GGG EEEEEEEEE - EEE EEEE EEEEE ----- EEEEEEEEEEE EEEEE EEE EEEEEEEEEE EEEEEEE EEEEEE ---</ss_1>
<ss_2> EEEEE EEEEEEEE EEEEEEEEEE EEEEEEEEE - EEEEE EEEEEEE EEEEEEE GGG EEEEEEEEE EEEE EEEEE GGG EEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEEGG EEEEEEE EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BBD</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1BBDH</entryIDChain>
<sequence>YYSYY-DMDYW</sequence>
<secondary-structure>EE - EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 2469 CA TYR H 99 64.294 51.017 113.801 1.00 21.42 C </line>
<line>ATOM 2481 CA TYR H 100 67.285 51.324 111.500 1.00 25.50 C </line>
<line>ATOM 2493 CA SER H 101 67.087 49.125 108.372 1.00 27.00 C </line>
<line>ATOM 2499 CA TYR H 102 70.742 48.884 107.538 1.00 28.48 C </line>
<line>ATOM 2511 CA TYR H 103 71.473 47.287 110.896 1.00 27.69 C </line>
<line>ATOM 2523 CA ASP H 104 68.067 45.604 111.157 1.00 26.51 C </line>
<line>ATOM 2531 CA MET H 105 67.997 46.868 114.693 1.00 23.98 C </line>
<line>ATOM 2539 CA ASP H 106 65.771 48.978 116.977 1.00 18.43 C </line>
<line>ATOM 2547 CA TYR H 107 68.179 51.179 118.977 1.00 16.89 C </line>
<line>ATOM 2559 CA TRP H 108 66.910 52.215 122.457 1.00 13.94 C </line>
</atom-coordinate>
<distance-map>
<line> TRP TYR ASP MET ASP TYR TYR SER TYR TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 9.12 6.47 4.05 5.63 7.11 8.60 9.24 6.39 3.79 </line>
<line>TYR CA 11.00 7.53 6.15 5.53 5.78 5.85 5.80 3.83 </line>
<line>SER CA 14.42 10.86 8.71 6.77 4.60 5.38 3.76 </line>
<line>TYR CA 15.76 11.95 10.67 7.92 5.57 3.79 </line>
<line>TYR CA 13.37 9.56 8.51 5.16 3.81 </line>
<line>ASP CA 13.14 9.60 7.11 3.76 </line>
<line>MET CA 9.49 6.08 3.82 </line>
<line>ASP CA 6.47 3.83 </line>
<line>TYR CA 3.85 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>TYR CA 297</line>
<line>TYR CA 271</line>
<line>SER CA 188</line>
<line>TYR CA 168</line>
<line>TYR CA 176</line>
<line>ASP CA 158</line>
<line>MET CA 213</line>
<line>ASP CA 280</line>
<line>TYR CA 326</line>
<line>TRP CA 346</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1RUP</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1RUPH</entryIDChain>
<sequence>LLWYDGGAGSW</sequence>
<secondary-structure>EE </secondary-structure>
<atom-coordinate>
<line>ATOM 2495 CA LEU H 95 51.849 26.469 32.154 1.00 12.13 C </line>
<line>ATOM 2503 CA LEU H 96 49.884 24.354 34.569 1.00 12.68 C </line>
<line>ATOM 2511 CA TRP H 97 50.204 25.504 38.161 1.00 15.01 C </line>
<line>ATOM 2525 CA TYR H 98 50.364 21.938 39.494 1.00 15.77 C </line>
<line>ATOM 2537 CA ASP H 99 53.318 20.673 37.536 1.00 15.12 C </line>
<line>ATOM 2545 CA GLY H 100 54.555 23.142 34.880 1.00 14.60 C </line>
<line>ATOM 2549 CA GLY H 100A 52.905 20.979 32.201 1.00 15.05 C </line>
<line>ATOM 2553 CA ALA H 100B 50.994 21.671 28.980 1.00 13.66 C </line>
<line>ATOM 2558 CA GLY H 101 53.044 24.735 28.179 1.00 14.58 C </line>
<line>ATOM 2562 CA SER H 102 51.226 26.733 25.468 1.00 13.87 C </line>
<line>ATOM 2570 CA TRP H 103 52.782 29.890 23.998 1.00 13.66 C </line>
</atom-coordinate>
<distance-map>
<line> TRP SER GLY ALA GLY GLY ASP TYR TRP LEU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 8.89 6.72 4.50 5.82 5.59 5.08 8.04 8.75 6.30 3.76 </line>
<line>LEU CA 12.28 9.50 7.14 6.30 5.11 4.84 5.84 5.51 3.79 </line>
<line>TRP CA 15.05 12.79 10.41 9.98 7.96 5.94 5.78 3.81 </line>
<line>TYR CA 17.58 14.85 11.96 10.54 7.78 6.35 3.76 </line>
<line>ASP CA 16.39 13.67 10.20 8.92 5.36 3.83 </line>
<line>GLY CA 12.93 10.61 7.05 7.05 3.82 </line>
<line>GLY CA 12.11 9.01 5.50 3.81 </line>
<line>ALA CA 9.78 6.17 3.77 </line>
<line>GLY CA 6.64 3.83 </line>
<line>SER CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>LEU CA 345</line>
<line>LEU CA 283</line>
<line>TRP CA 263</line>
<line>TYR CA 172</line>
<line>ASP CA 138</line>
<line>GLY CA 206</line>
<line>GLY CA 186</line>
<line>ALA CA 214</line>
<line>GLY CA 277</line>
<line>SER CA 307</line>
<line>TRP CA 349</line>
</n14>
</entryChain>
<parallel>
<x>16.33300018310547</x>
<y>24.625999450683594</y>
<z>78.81700134277344</z>
</parallel>
<rotation>
<x>0.8360000252723694</x>
<y>0.125</y>
<z>0.5339999794960022</z>
<x>-0.33000001311302185</x>
<y>0.8920000195503235</y>
<z>0.3070000112056732</z>
<x>0.43799999356269836</x>
<y>0.43299999833106995</y>
<z>-0.7870000004768372</z>
</rotation>
<rmsd>2.7600929737091064</rmsd>
<dmax>3.4728879928588867</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BBD</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1BBDH</entryIDChain>
<sequence>LAPVC-----SSVTL</sequence>
<secondary-structure>E ----- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2706 CA LEU H 129 83.989 49.511 152.844 1.00 18.08 C </line>
<line>ATOM 2714 CA ALA H 130 87.169 47.516 153.568 1.00 26.23 C </line>
<line>ATOM 2719 CA PRO H 131 86.898 44.129 155.241 1.00 34.59 C </line>
<line>ATOM 2726 CA VAL H 132 87.421 43.636 158.971 1.00 44.50 C </line>
<line>ATOM 2733 CA CYS H 133 91.061 42.980 159.962 1.00 52.62 C </line>
<line>ATOM 2739 CA SER H 139 91.205 32.853 148.496 1.00 53.07 C </line>
<line>ATOM 2745 CA SER H 140 88.534 35.499 147.920 1.00 50.89 C </line>
<line>ATOM 2751 CA VAL H 141 87.852 38.817 149.742 1.00 44.99 C </line>
<line>ATOM 2758 CA THR H 142 84.753 40.949 149.246 1.00 36.51 C </line>
<line>ATOM 2765 CA LEU H 143 84.526 44.744 149.337 1.00 30.85 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR VAL SER SER CYS VAL PRO ALA LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 5.94 9.32 11.79 15.53 18.67 11.97 9.16 6.57 3.82 </line>
<line>ALA CA 5.71 8.22 9.53 13.35 16.03 8.75 6.66 3.79 </line>
<line>PRO CA 6.39 7.12 7.70 11.43 13.83 6.40 3.80 </line>
<line>VAL CA 10.12 10.44 10.42 13.77 15.50 3.83 </line>
<line>CYS CA 12.60 12.60 11.49 14.40 15.30 </line>
<line>SER CA 13.66 10.38 6.95 3.80 </line>
<line>SER CA 10.18 6.76 3.85 </line>
<line>VAL CA 6.81 3.79 </line>
<line>THR CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 309</line>
<line>ALA CA 270</line>
<line>PRO CA 221</line>
<line>VAL CA 126</line>
<line>CYS CA 109</line>
<line>SER CA 112</line>
<line>SER CA 169</line>
<line>VAL CA 244</line>
<line>THR CA 303</line>
<line>LEU CA 370</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1RUP</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1RUPH</entryIDChain>
<sequence>LAPVCGDTTGSSVTL</sequence>
<secondary-structure>E GGG EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2720 CA LEU H 124 63.272 41.145 -9.012 1.00 14.66 C </line>
<line>ATOM 2728 CA ALA H 125 62.966 39.816 -12.556 1.00 15.32 C </line>
<line>ATOM 2733 CA PRO H 126 65.650 37.444 -13.751 1.00 16.87 C </line>
<line>ATOM 2740 CA VAL H 127 68.135 38.398 -16.371 1.00 17.57 C </line>
<line>ATOM 2747 CA CYS H 128 67.353 36.847 -19.778 1.00 20.88 C </line>
<line>ATOM 2753 CA GLY H 129 70.527 34.718 -19.749 1.00 24.65 C </line>
<line>ATOM 2757 CA ASP H 130 69.324 33.076 -16.506 1.00 23.51 C </line>
<line>ATOM 2765 CA THR H 133 65.882 31.946 -17.863 1.00 21.22 C </line>
<line>ATOM 2772 CA THR H 134 67.027 29.225 -20.301 1.00 21.91 C </line>
<line>ATOM 2779 CA GLY H 135 67.591 26.465 -17.787 1.00 25.55 C </line>
<line>ATOM 2783 CA SER H 136 65.126 24.074 -16.249 1.00 24.26 C </line>
<line>ATOM 2789 CA SER H 137 64.303 26.230 -13.158 1.00 21.05 C </line>
<line>ATOM 2795 CA VAL H 138 64.119 29.996 -12.815 1.00 16.28 C </line>
<line>ATOM 2802 CA THR H 139 64.439 32.211 -9.763 1.00 15.12 C </line>
<line>ATOM 2809 CA LEU H 140 62.494 35.435 -9.183 1.00 13.26 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR VAL SER SER GLY THR THR ASP GLY CYS VAL PRO ALA LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 5.77 9.04 11.81 15.51 18.63 17.64 16.84 13.03 12.57 14.46 12.29 9.24 6.47 3.80 </line>
<line>ALA CA 5.55 8.23 9.89 13.66 16.31 15.07 13.73 9.93 10.07 11.61 8.96 6.58 3.78 </line>
<line>PRO CA 5.90 6.69 7.66 11.31 13.61 11.86 10.60 6.87 6.34 8.20 6.29 3.73 </line>
<line>VAL CA 9.61 9.78 9.97 13.16 14.64 12.03 10.04 7.00 5.45 5.54 3.82 </line>
<line>CYS CA 11.74 11.41 10.29 12.88 13.44 10.57 7.65 5.46 5.37 3.82 </line>
<line>GLY CA 13.29 11.96 10.56 12.42 12.44 8.98 6.54 5.73 3.83 </line>
<line>ASP CA 10.29 8.37 7.09 9.13 9.94 6.95 5.87 3.87 </line>
<line>THR CA 9.95 8.23 5.69 7.57 8.07 5.74 3.83 </line>
<line>THR CA 13.52 11.25 8.07 8.21 6.82 3.78 </line>
<line>GLY CA 13.43 10.36 7.02 5.68 3.76 </line>
<line>SER CA 13.64 10.43 6.92 3.86 </line>
<line>SER CA 10.19 6.88 3.79 </line>
<line>VAL CA 6.74 3.78 </line>
<line>THR CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 338</line>
<line>ALA CA 311</line>
<line>PRO CA 274</line>
<line>VAL CA 185</line>
<line>CYS CA 170</line>
<line>GLY CA 132</line>
<line>ASP CA 176</line>
<line>THR CA 210</line>
<line>THR CA 159</line>
<line>GLY CA 140</line>
<line>SER CA 134</line>
<line>SER CA 199</line>
<line>VAL CA 275</line>
<line>THR CA 327</line>
<line>LEU CA 396</line>
</n14>
</entryChain>
<parallel>
<x>22.900999069213867</x>
<y>7.624000072479248</y>
<z>167.5540008544922</z>
</parallel>
<rotation>
<x>-0.5379999876022339</x>
<y>-0.49799999594688416</y>
<z>0.6800000071525574</z>
<x>-0.1420000046491623</x>
<y>0.8489999771118164</y>
<z>0.5090000033378601</z>
<x>-0.8309999704360962</x>
<y>0.1770000010728836</y>
<z>-0.5270000100135803</z>
</rotation>
<rmsd>0.6197270154953003</rmsd>
<dmax>1.3080580234527588</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1RUP</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1RUPH</entryIDChain>
<sequence>YINYS-GFTSH</sequence>
<secondary-structure>EEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2108 CA TYR H 50 52.685 35.511 35.772 1.00 11.73 C </line>
<line>ATOM 2120 CA ILE H 51 49.150 35.955 36.921 1.00 11.85 C </line>
<line>ATOM 2128 CA ASN H 52 47.636 32.661 37.932 1.00 12.11 C </line>
<line>ATOM 2136 CA TYR H 53 44.144 31.266 37.764 1.00 13.79 C </line>
<line>ATOM 2148 CA SER H 54 43.191 32.793 41.090 1.00 17.94 C </line>
<line>ATOM 2156 CA GLY H 55 44.551 36.275 40.245 1.00 14.69 C </line>
<line>ATOM 2160 CA PHE H 56 47.828 35.945 42.250 1.00 14.69 C </line>
<line>ATOM 2171 CA THR H 57 50.894 37.444 40.553 1.00 13.12 C </line>
<line>ATOM 2178 CA SER H 58 54.659 37.209 40.585 1.00 12.92 C </line>
<line>ATOM 2184 CA HIS H 59 57.288 39.049 38.583 1.00 12.59 C </line>
</atom-coordinate>
<distance-map>
<line> HIS SER THR PHE GLY SER TYR ASN ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 6.45 5.47 5.46 8.11 9.31 11.22 9.74 6.19 3.74 </line>
<line>ILE CA 8.86 6.73 4.30 5.49 5.68 7.93 6.91 3.76 </line>
<line>ASN CA 11.59 8.78 6.35 5.43 5.28 5.45 3.76 </line>
<line>TYR CA 15.30 12.40 9.57 7.46 5.60 3.78 </line>
<line>SER CA 15.63 12.30 9.01 5.73 3.83 </line>
<line>GLY CA 13.14 10.16 6.46 3.86 </line>
<line>PHE CA 10.61 7.14 3.81 </line>
<line>THR CA 6.88 3.77 </line>
<line>SER CA 3.78 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>TYR CA 438</line>
<line>ILE CA 393</line>
<line>ASN CA 370</line>
<line>TYR CA 326</line>
<line>SER CA 249</line>
<line>GLY CA 275</line>
<line>PHE CA 247</line>
<line>THR CA 304</line>
<line>SER CA 298</line>
<line>HIS CA 304</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BBD</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1BBDH</entryIDChain>
<sequence>RLDPANGYTKY</sequence>
<secondary-structure>EEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2091 CA ARG H 50 56.239 59.138 117.358 1.00 21.80 C </line>
<line>ATOM 2102 CA LEU H 51 58.055 61.515 115.037 1.00 21.67 C </line>
<line>ATOM 2110 CA ASP H 52 58.815 61.681 111.371 1.00 27.32 C </line>
<line>ATOM 2118 CA PRO H 53 61.966 63.880 110.924 1.00 29.89 C </line>
<line>ATOM 2125 CA ALA H 54 61.361 64.052 107.107 1.00 29.70 C </line>
<line>ATOM 2130 CA ASN H 55 58.099 66.201 107.377 1.00 31.53 C </line>
<line>ATOM 2138 CA GLY H 56 58.043 67.046 111.111 1.00 28.36 C </line>
<line>ATOM 2142 CA TYR H 57 54.618 65.384 111.636 1.00 24.39 C </line>
<line>ATOM 2154 CA THR H 58 54.293 63.798 115.122 1.00 19.64 C </line>
<line>ATOM 2161 CA LYS H 59 51.429 61.544 116.238 1.00 19.61 C </line>
<line>ATOM 2170 CA TYR H 60 50.620 60.752 119.925 1.00 21.72 C </line>
</atom-coordinate>
<distance-map>
<line> TYR LYS THR TYR GLY ASN ALA PRO ASP LEU ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 6.38 5.49 5.52 8.62 10.24 12.37 12.47 9.83 7.00 3.79 </line>
<line>LEU CA 8.93 6.73 4.40 6.19 6.78 8.98 8.96 6.15 3.75 </line>
<line>ASP CA 11.88 8.85 6.25 5.60 5.43 6.07 5.50 3.87 </line>
<line>PRO CA 14.82 12.03 8.75 7.53 5.04 5.74 3.87 </line>
<line>ALA CA 17.05 13.72 10.69 8.23 6.00 3.92 </line>
<line>ASN CA 15.59 12.03 8.96 5.56 3.83 </line>
<line>GLY CA 13.13 10.02 6.38 3.84 </line>
<line>TYR CA 10.30 6.79 3.84 </line>
<line>THR CA 6.77 3.81 </line>
<line>LYS CA 3.86 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ARG CA 385</line>
<line>LEU CA 363</line>
<line>ASP CA 300</line>
<line>PRO CA 314</line>
<line>ALA CA 203</line>
<line>ASN CA 171</line>
<line>GLY CA 238</line>
<line>TYR CA 221</line>
<line>THR CA 297</line>
<line>LYS CA 270</line>
<line>TYR CA 280</line>
</n14>
</entryChain>
<parallel>
<x>-10.413999557495117</x>
<y>-28.58099937438965</y>
<z>-73.39199829101562</z>
</parallel>
<rotation>
<x>-0.6679999828338623</x>
<y>-0.3140000104904175</y>
<z>-0.6740000247955322</z>
<x>-0.6399999856948853</x>
<y>0.7059999704360962</y>
<z>0.3050000071525574</z>
<x>0.3799999952316284</x>
<y>0.6349999904632568</y>
<z>-0.6729999780654907</z>
</rotation>
<rmsd>1.1888459920883179</rmsd>
<dmax>2.1381399631500244</dmax>
</indel>