NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BEDA-2B6MA
confEVID 1BEDA-2B6MA
pdbIDA 1BED
pdbIDB 2B6M
pdbChainA A
pdbChainB A
identity 0.356400012969971
indelSize 2
alignment <alignment>
<seq1>AQFKEGEHYQVLKTPASSSPVVSEFFSFYCPHCNTF---EPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVVNNRYLVQGQSVK------SLDEYFDLVNYLLTLK</seq1>
<seq2>-QYEDGKQYTTLEKPVAGAPQVLEFFSFFCAHAYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALGVEDKVTVPLFEGVQKTQT-IRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEK-</seq2>
<ss_1> EEEEE EEEEEE ---HHHHHHHHH EEE GGGHHHHHHHHHHHHH HHHHHHHHHIIIII HHHHHHHHH HHHHHHHH HHHHHHHHHHHHHHHH EEEEEEEEEEEGGG ------ HHHHHHHHHHH </ss_1>
<ss_2>- EEE EEEEEE HHHHH HHHHHHH HHHHHHHHHHHHHHH HHHHHHHHH - HHHHHHH HHHHHHHH HHHHHHHHHHHHHHHH EEEE EEEEE HHHHHHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BEDA</entryIDChain>
<sequence>HCNTF---EPIIA</sequence>
<secondary-structure> ---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 235 CA HIS A 32 -10.093 -26.116 51.132 1.00 31.96 C </line>
<line>ATOM 245 CA CYS A 33 -11.175 -28.342 48.203 1.00 30.31 C </line>
<line>ATOM 251 CA ASN A 34 -14.571 -28.214 49.871 1.00 33.66 C </line>
<line>ATOM 259 CA THR A 35 -14.382 -24.434 50.207 1.00 35.11 C </line>
<line>ATOM 266 CA PHE A 36 -13.261 -24.312 46.569 1.00 35.23 C </line>
<line>ATOM 277 CA GLU A 37 -16.453 -25.923 45.205 1.00 40.50 C </line>
<line>ATOM 286 CA PRO A 38 -18.548 -22.769 44.656 1.00 39.97 C </line>
<line>ATOM 293 CA ILE A 39 -15.634 -21.264 42.696 1.00 35.34 C </line>
<line>ATOM 301 CA ILE A 40 -15.383 -24.446 40.630 1.00 43.53 C </line>
<line>ATOM 309 CA ALA A 41 -19.122 -24.250 39.859 1.00 48.83 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ILE ILE PRO GLU PHE THR ASN CYS HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 14.56 11.88 11.20 11.16 8.70 5.84 4.70 5.10 3.83 </line>
<line>CYS CA 12.23 9.50 10.02 9.90 6.53 4.82 5.44 3.79 </line>
<line>ASN CA 11.69 10.01 10.05 8.52 5.53 5.28 3.80 </line>
<line>THR CA 11.38 9.63 8.25 7.14 5.61 3.81 </line>
<line>PHE CA 8.91 6.31 5.47 5.83 3.83 </line>
<line>GLU CA 6.21 4.93 5.35 3.83 </line>
<line>PRO CA 5.05 5.39 3.82 </line>
<line>ILE CA 5.40 3.80 </line>
<line>ILE CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 247</line>
<line>CYS CA 353</line>
<line>ASN CA 323</line>
<line>THR CA 255</line>
<line>PHE CA 315</line>
<line>GLU CA 346</line>
<line>PRO CA 238</line>
<line>ILE CA 295</line>
<line>ILE CA 375</line>
<line>ALA CA 277</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2B6M</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2B6MA</entryIDChain>
<sequence>HAYQFEEVLHISD</sequence>
<secondary-structure>HHHH HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 235 CA HIS A 32 40.725 23.887 -4.887 1.00 61.28 C </line>
<line>ATOM 239 CA ALA A 33 38.727 21.114 -3.200 1.00 69.32 C </line>
<line>ATOM 244 CA TYR A 34 35.772 22.469 -5.181 1.00 75.68 C </line>
<line>ATOM 256 CA GLN A 35 37.358 21.872 -8.604 1.00 76.67 C </line>
<line>ATOM 265 CA PHE A 36 38.089 18.269 -7.632 1.00 78.37 C </line>
<line>ATOM 276 CA GLU A 37 34.451 17.326 -8.195 1.00 80.18 C </line>
<line>ATOM 285 CA GLU A 38 32.720 20.226 -9.930 1.00 79.32 C </line>
<line>ATOM 294 CA VAL A 39 35.229 20.773 -12.706 1.00 75.27 C </line>
<line>ATOM 301 CA LEU A 40 37.402 17.646 -12.516 1.00 75.95 C </line>
<line>ATOM 309 CA HIS A 41 34.617 15.388 -11.236 1.00 79.07 C </line>
<line>ATOM 319 CA ILE A 42 37.539 13.135 -10.318 1.00 80.01 C </line>
<line>ATOM 327 CA SER A 43 35.142 11.667 -7.797 1.00 80.05 C </line>
<line>ATOM 333 CA ASP A 44 33.076 10.565 -10.821 1.00 78.31 C </line>
</atom-coordinate>
<distance-map>
<line> ASP SER ILE HIS LEU VAL GLU GLU PHE GLN TYR ALA HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 16.47 13.75 12.46 12.24 10.40 10.05 10.14 9.66 6.79 5.40 5.16 3.81 </line>
<line>ALA CA 14.19 11.10 10.76 10.69 10.03 10.13 9.06 7.59 5.31 5.63 3.81 </line>
<line>TYR CA 13.45 11.13 10.80 9.39 8.93 7.73 6.07 6.11 5.39 3.82 </line>
<line>GLN CA 12.29 10.47 8.91 7.52 5.76 4.75 5.10 5.41 3.80 </line>
<line>PHE CA 9.73 7.23 5.82 5.77 4.97 6.34 6.16 3.80 </line>
<line>GLU CA 7.38 5.71 5.62 3.61 5.24 5.73 3.80 </line>
<line>GLU CA 9.71 9.15 8.58 5.36 5.94 3.78 </line>
<line>VAL CA 10.60 10.35 8.33 5.62 3.81 </line>
<line>LEU CA 8.47 7.95 5.02 3.81 </line>
<line>HIS CA 5.08 5.09 3.80 </line>
<line>ILE CA 5.17 3.78 </line>
<line>SER CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>HIS CA 283</line>
<line>ALA CA 377</line>
<line>TYR CA 354</line>
<line>GLN CA 308</line>
<line>PHE CA 382</line>
<line>GLU CA 380</line>
<line>GLU CA 296</line>
<line>VAL CA 242</line>
<line>LEU CA 310</line>
<line>HIS CA 331</line>
<line>ILE CA 400</line>
<line>SER CA 421</line>
<line>ASP CA 327</line>
</n14>
</entryChain>
<parallel>
<x>-51.792999267578125</x>
<y>-44.39400100708008</y>
<z>55.263999938964844</z>
</parallel>
<rotation>
<x>0.7720000147819519</x>
<y>0.6240000128746033</y>
<z>0.125</z>
<x>0.009999999776482582</x>
<y>-0.20800000429153442</y>
<z>0.9779999852180481</z>
<x>0.6359999775886536</x>
<y>-0.753000020980835</y>
<z>-0.16699999570846558</z>
</rotation>
<rmsd>1.926427960395813</rmsd>
<dmax>4.707873821258545</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2B6M</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2B6MA</entryIDChain>
<sequence>QKTQT-IRSAS</sequence>
<secondary-structure> - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 725 CA GLN A 97 31.718 29.549 -1.639 1.00 69.80 C </line>
<line>ATOM 734 CA LYS A 98 29.747 30.715 -4.667 1.00 71.72 C </line>
<line>ATOM 743 CA THR A 99 26.502 32.226 -3.305 1.00 69.94 C </line>
<line>ATOM 750 CA GLN A 100 28.209 32.270 0.113 1.00 73.67 C </line>
<line>ATOM 759 CA THR A 101 24.918 32.005 1.989 1.00 70.47 C </line>
<line>ATOM 766 CA ILE A 102 25.993 29.361 4.503 1.00 70.08 C </line>
<line>ATOM 774 CA ARG A 103 27.153 31.118 7.684 1.00 72.31 C </line>
<line>ATOM 785 CA SER A 104 25.484 28.950 10.331 1.00 68.76 C </line>
<line>ATOM 791 CA ALA A 105 24.304 25.467 11.192 1.00 67.19 C </line>
<line>ATOM 796 CA SER A 106 20.813 26.642 10.242 1.00 67.65 C </line>
</atom-coordinate>
<distance-map>
<line> SER ALA SER ARG ILE THR GLN THR LYS GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 16.39 15.37 13.51 10.50 8.40 8.09 4.77 6.09 3.80 </line>
<line>LYS CA 17.85 17.57 15.69 12.63 10.00 8.32 5.26 3.83 </line>
<line>THR CA 15.72 16.15 14.06 11.06 8.33 5.53 3.82 </line>
<line>GLN CA 13.75 13.57 11.08 7.73 5.71 3.80 </line>
<line>THR CA 10.66 11.31 8.90 6.18 3.80 </line>
<line>ILE CA 8.20 7.92 5.86 3.81 </line>
<line>ARG CA 8.17 7.24 3.81 </line>
<line>SER CA 5.21 3.78 </line>
<line>ALA CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLN CA 270</line>
<line>LYS CA 210</line>
<line>THR CA 189</line>
<line>GLN CA 219</line>
<line>THR CA 218</line>
<line>ILE CA 310</line>
<line>ARG CA 248</line>
<line>SER CA 255</line>
<line>ALA CA 306</line>
<line>SER CA 272</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BEDA</entryIDChain>
<sequence>HTLRKPPKDEQ</sequence>
<secondary-structure>II HH</secondary-structure>
<atom-coordinate>
<line>ATOM 711 CA HIS A 94 -16.549 -32.135 56.787 1.00 45.71 C </line>
<line>ATOM 721 CA THR A 95 -19.819 -30.687 58.127 1.00 49.35 C </line>
<line>ATOM 728 CA LEU A 96 -21.094 -33.941 59.689 1.00 45.69 C </line>
<line>ATOM 736 CA ARG A 97 -17.492 -34.837 60.592 1.00 44.18 C </line>
<line>ATOM 741 CA LYS A 98 -18.463 -38.521 60.175 1.00 43.34 C </line>
<line>ATOM 746 CA PRO A 99 -15.856 -40.135 57.784 1.00 37.19 C </line>
<line>ATOM 753 CA PRO A 100 -16.575 -43.585 56.308 1.00 36.66 C </line>
<line>ATOM 760 CA LYS A 101 -14.498 -45.987 58.417 1.00 41.09 C </line>
<line>ATOM 769 CA ASP A 102 -14.503 -48.632 55.689 1.00 33.44 C </line>
<line>ATOM 777 CA GLU A 103 -15.762 -49.789 52.275 1.00 36.08 C </line>
<line>ATOM 786 CA GLN A 104 -19.129 -50.970 53.581 1.00 41.73 C </line>
</atom-coordinate>
<distance-map>
<line> GLN GLU ASP LYS PRO PRO LYS ARG LEU THR HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 19.28 18.24 16.66 14.10 11.46 8.09 7.48 4.76 5.69 3.82 </line>
<line>THR CA 20.80 20.39 18.87 16.20 13.42 10.25 8.21 5.36 3.83 </line>
<line>LEU CA 18.20 18.29 16.59 13.79 11.17 8.33 5.30 3.82 </line>
<line>ARG CA 17.67 17.20 14.94 11.75 9.78 6.22 3.83 </line>
<line>LYS CA 14.10 14.02 11.75 8.63 6.65 3.89 </line>
<line>PRO CA 12.07 11.12 8.86 6.04 3.82 </line>
<line>PRO CA 8.28 7.44 5.49 3.81 </line>
<line>LYS CA 8.35 7.33 3.80 </line>
<line>ASP CA 5.60 3.82 </line>
<line>GLU CA 3.80 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>HIS CA 234</line>
<line>THR CA 183</line>
<line>LEU CA 174</line>
<line>ARG CA 179</line>
<line>LYS CA 217</line>
<line>PRO CA 293</line>
<line>PRO CA 319</line>
<line>LYS CA 210</line>
<line>ASP CA 233</line>
<line>GLU CA 281</line>
<line>GLN CA 241</line>
</n14>
</entryChain>
<parallel>
<x>44.84000015258789</x>
<y>69.31500244140625</y>
<z>-56.34700012207031</z>
</parallel>
<rotation>
<x>0.824999988079071</x>
<y>0.18299999833106995</y>
<z>0.5350000262260437</z>
<x>0.5339999794960022</x>
<y>0.0560000017285347</y>
<z>-0.8429999947547913</z>
<x>-0.18400000035762787</x>
<y>0.9819999933242798</y>
<z>-0.052000001072883606</z>
</rotation>
<rmsd>1.7962900400161743</rmsd>
<dmax>2.4029150009155273</dmax>
</indel>