NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BETA-1HCFA
confEVID 1BETA-1HCFA
pdbIDA 1BET
pdbIDB 1HCF
pdbChainA A
pdbChainB A
identity 0.509100019931793
indelSize 3
alignment <alignment>
<seq1>-----------GEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINN-SVFRQYFFETKCRASNPVE-SGCRGIDSKHWNSYCTTTHTFVKALTTDEK-QAAWRFIRIDTACVCVLSRKA</seq1>
<seq2>GVSETAPASRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADPGAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRT</seq2>
<ss_1>----------- EEEEE EEEEE EEEE EEEEE -EEE EEEEE - EEEEEEEEEEEEEEEEEE -EEEEEEEEE EEEEEEE </ss_1>
<ss_2> EEEEEEE EEEEE EEEE EEE EEE EEEEEEE EEEEEEEEEEEEEEEEEE EEEEEEEEE EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BET</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BETA</entryIDChain>
<sequence>VNINN-SVFRQ</sequence>
<secondary-structure>EEE -EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 237 CA VAL A 42 30.559 14.194 8.109 1.00 52.16 C </line>
<line>ATOM 244 CA ASN A 43 32.752 11.475 9.268 1.00 65.28 C </line>
<line>ATOM 252 CA ILE A 44 32.639 11.258 13.019 1.00 74.28 C </line>
<line>ATOM 260 CA ASN A 45 35.001 8.561 13.946 1.00 78.16 C </line>
<line>ATOM 268 CA ASN A 46 35.710 6.775 10.769 1.00 78.73 C </line>
<line>ATOM 276 CA SER A 47 32.058 6.485 9.927 1.00 75.14 C </line>
<line>ATOM 282 CA VAL A 48 30.107 8.921 7.847 1.00 68.04 C </line>
<line>ATOM 289 CA PHE A 49 26.747 10.704 8.204 1.00 54.10 C </line>
<line>ATOM 300 CA ARG A 50 24.880 12.736 5.602 1.00 35.01 C </line>
<line>ATOM 311 CA GLN A 51 23.824 15.991 7.267 1.00 27.42 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ARG PHE VAL SER ASN ASN ILE ASN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.02 6.38 5.17 5.30 8.06 9.42 9.25 6.09 3.68 </line>
<line>ASN CA 10.20 8.77 6.15 3.94 5.08 5.75 5.95 3.76 </line>
<line>ILE CA 11.54 10.84 7.63 6.21 5.72 5.88 3.70 </line>
<line>ASN CA 14.99 13.77 10.28 7.83 5.40 3.71 </line>
<line>ASN CA 15.44 13.40 10.12 6.67 3.76 </line>
<line>SER CA 12.85 10.45 7.00 3.75 </line>
<line>VAL CA 9.48 6.85 3.82 </line>
<line>PHE CA 6.11 3.79 </line>
<line>ARG CA 3.81 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 227</line>
<line>ASN CA 154</line>
<line>ILE CA 140</line>
<line>ASN CA 88</line>
<line>ASN CA 81</line>
<line>SER CA 102</line>
<line>VAL CA 139</line>
<line>PHE CA 181</line>
<line>ARG CA 218</line>
<line>GLN CA 288</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HCF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HCFA</entryIDChain>
<sequence>VPAAGGSPLRQ</sequence>
<secondary-structure>E EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 310 CA VAL A 44 6.942 -15.758 41.377 1.00 47.17 C </line>
<line>ATOM 317 CA PRO A 45 4.835 -17.108 44.264 1.00 52.65 C </line>
<line>ATOM 324 CA ALA A 46 1.172 -16.772 43.287 1.00 61.64 C </line>
<line>ATOM 329 CA ALA A 47 -1.497 -14.944 45.291 1.00 71.12 C </line>
<line>ATOM 334 CA GLY A 48 -0.640 -17.410 48.055 1.00 74.85 C </line>
<line>ATOM 338 CA GLY A 49 0.309 -20.740 46.513 1.00 73.44 C </line>
<line>ATOM 342 CA SER A 50 1.071 -22.343 43.120 1.00 70.37 C </line>
<line>ATOM 348 CA PRO A 51 3.956 -21.189 40.844 1.00 63.08 C </line>
<line>ATOM 355 CA LEU A 52 3.267 -18.246 38.529 1.00 54.35 C </line>
<line>ATOM 363 CA ARG A 53 5.457 -17.134 35.572 1.00 47.26 C </line>
<line>ATOM 374 CA GLN A 54 7.412 -13.918 36.050 1.00 41.28 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ARG LEU PRO SER GLY GLY ALA ALA PRO VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 5.66 6.15 5.27 6.22 8.99 9.76 10.24 9.34 6.16 3.82 </line>
<line>PRO CA 9.18 8.71 6.05 5.40 6.55 6.22 6.67 6.77 3.81 </line>
<line>ALA CA 9.97 8.83 5.40 5.76 5.57 5.19 5.14 3.81 </line>
<line>ALA CA 12.88 12.15 8.91 9.41 8.13 6.19 3.80 </line>
<line>GLY CA 14.87 13.90 10.33 9.35 7.18 3.79 </line>
<line>GLY CA 14.37 12.62 8.87 6.76 3.83 </line>
<line>SER CA 12.70 10.17 6.53 3.85 </line>
<line>PRO CA 9.37 6.82 3.81 </line>
<line>LEU CA 6.49 3.84 </line>
<line>ARG CA 3.79 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 229</line>
<line>PRO CA 163</line>
<line>ALA CA 124</line>
<line>ALA CA 88</line>
<line>GLY CA 76</line>
<line>GLY CA 76</line>
<line>SER CA 87</line>
<line>PRO CA 125</line>
<line>LEU CA 158</line>
<line>ARG CA 208</line>
<line>GLN CA 281</line>
</n14>
</entryChain>
<parallel>
<x>29.558000564575195</x>
<y>27.76799964904785</y>
<z>-32.959999084472656</z>
</parallel>
<rotation>
<x>0.008999999612569809</x>
<y>0.625</y>
<z>-0.781000018119812</z>
<x>0.2070000022649765</x>
<y>0.7630000114440918</y>
<z>0.6129999756813049</z>
<x>0.9779999852180481</x>
<y>-0.16699999570846558</y>
<z>-0.12200000137090683</z>
</rotation>
<rmsd>1.5110490322113037</rmsd>
<dmax>2.0196380615234375</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BET</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BETA</entryIDChain>
<sequence>SNPVE-SGCRG</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 401 CA SER A 61 2.631 35.488 4.045 1.00 32.10 C </line>
<line>ATOM 407 CA ASN A 62 -1.120 35.900 3.528 1.00 33.00 C </line>
<line>ATOM 415 CA PRO A 63 -2.847 32.454 3.609 1.00 25.61 C </line>
<line>ATOM 422 CA VAL A 64 -6.021 34.510 3.454 1.00 26.06 C </line>
<line>ATOM 429 CA GLU A 65 -6.339 37.981 1.772 1.00 37.36 C </line>
<line>ATOM 438 CA SER A 66 -6.294 39.903 5.118 1.00 36.48 C </line>
<line>ATOM 444 CA GLY A 67 -3.154 38.327 6.531 1.00 25.50 C </line>
<line>ATOM 448 CA CYS A 68 -3.131 35.351 8.935 1.00 24.27 C </line>
<line>ATOM 454 CA ARG A 69 -6.245 33.168 9.426 1.00 29.04 C </line>
<line>ATOM 465 CA GLY A 70 -8.680 34.062 12.191 1.00 32.92 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ARG CYS GLY SER GLU VAL PRO ASN SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 14.01 10.64 7.56 6.91 10.01 9.58 8.73 6.28 3.81 </line>
<line>ASN CA 11.64 8.28 5.79 4.36 6.73 5.89 5.09 3.86 </line>
<line>PRO CA 10.50 6.77 6.07 6.57 8.35 6.79 3.78 </line>
<line>VAL CA 9.14 6.13 6.25 5.68 5.65 3.87 </line>
<line>GLU CA 11.38 9.04 8.28 5.74 3.86 </line>
<line>SER CA 9.48 8.00 6.73 3.79 </line>
<line>GLY CA 8.99 6.67 3.83 </line>
<line>CYS CA 6.56 3.83 </line>
<line>ARG CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>SER CA 244</line>
<line>ASN CA 234</line>
<line>PRO CA 223</line>
<line>VAL CA 199</line>
<line>GLU CA 168</line>
<line>SER CA 225</line>
<line>GLY CA 260</line>
<line>CYS CA 276</line>
<line>ARG CA 251</line>
<line>GLY CA 220</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HCF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HCFA</entryIDChain>
<sequence>DPGAGGGGCRG</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 461 CA ASP A 64 15.458 2.885 12.418 1.00 76.46 C </line>
<line>ATOM 469 CA PRO A 71 12.932 11.667 12.989 1.00 91.37 C </line>
<line>ATOM 476 CA GLY A 72 11.591 9.711 15.957 1.00 89.94 C </line>
<line>ATOM 480 CA ALA A 73 13.810 6.620 15.767 1.00 89.20 C </line>
<line>ATOM 485 CA GLY A 74 16.408 5.416 18.274 1.00 85.24 C </line>
<line>ATOM 489 CA GLY A 75 19.874 6.917 18.042 1.00 79.34 C </line>
<line>ATOM 493 CA GLY A 76 18.555 9.320 15.435 1.00 70.02 C </line>
<line>ATOM 497 CA GLY A 77 17.306 12.844 16.112 1.00 53.07 C </line>
<line>ATOM 501 CA CYS A 78 13.892 13.431 17.682 1.00 40.41 C </line>
<line>ATOM 507 CA ARG A 79 10.844 14.694 15.828 1.00 35.38 C </line>
<line>ATOM 518 CA GLY A 80 10.049 18.358 16.417 1.00 36.01 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ARG CYS GLY GLY GLY GLY ALA GLY PRO ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 16.87 13.13 11.89 10.78 7.75 8.21 6.45 5.28 8.61 9.16 </line>
<line>PRO CA 8.05 4.65 5.10 5.50 6.57 9.81 8.89 5.83 3.80 </line>
<line>GLY CA 8.80 5.04 4.70 6.52 6.99 8.99 6.86 3.81 </line>
<line>ALA CA 12.34 8.60 7.08 7.15 5.47 6.48 3.81 </line>
<line>GLY CA 14.54 11.09 8.42 7.79 5.28 3.78 </line>
<line>GLY CA 15.17 12.12 8.85 6.74 3.78 </line>
<line>GLY CA 12.45 9.41 6.61 3.80 </line>
<line>GLY CA 9.12 6.73 3.80 </line>
<line>CYS CA 6.38 3.78 </line>
<line>ARG CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ASP CA 142</line>
<line>PRO CA 213</line>
<line>GLY CA 240</line>
<line>ALA CA 220</line>
<line>GLY CA 228</line>
<line>GLY CA 215</line>
<line>GLY CA 222</line>
<line>GLY CA 247</line>
<line>CYS CA 261</line>
<line>ARG CA 238</line>
<line>GLY CA 206</line>
</n14>
</entryChain>
<parallel>
<x>-18.277999877929688</x>
<y>27.253000259399414</y>
<z>-10.954999923706055</z>
</parallel>
<rotation>
<x>-0.13899999856948853</x>
<y>0.9900000095367432</y>
<z>-0.012000000104308128</z>
<x>-0.07500000298023224</x>
<y>0.0010000000474974513</y>
<z>0.996999979019165</z>
<x>-0.9869999885559082</x>
<y>-0.14000000059604645</y>
<z>-0.07400000095367432</z>
</rotation>
<rmsd>3.3047258853912354</rmsd>
<dmax>6.028748035430908</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1BET</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BETA</entryIDChain>
<sequence>TTDEK-QAAWR</sequence>
<secondary-structure>EE -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 634 CA THR A 91 30.556 23.961 6.905 1.00 32.90 C </line>
<line>ATOM 641 CA THR A 92 33.341 25.631 5.013 1.00 37.23 C </line>
<line>ATOM 648 CA ASP A 93 34.235 29.189 4.007 1.00 54.73 C </line>
<line>ATOM 656 CA GLU A 94 37.009 30.775 1.758 1.00 69.59 C </line>
<line>ATOM 665 CA LYS A 95 39.575 29.463 4.282 1.00 67.91 C </line>
<line>ATOM 674 CA GLN A 96 38.331 26.965 6.925 1.00 56.24 C </line>
<line>ATOM 683 CA ALA A 97 36.061 23.950 7.416 1.00 48.77 C </line>
<line>ATOM 688 CA ALA A 98 34.573 24.053 10.968 1.00 42.79 C </line>
<line>ATOM 693 CA TRP A 99 31.402 23.168 12.832 1.00 32.03 C </line>
<line>ATOM 707 CA ARG A 100 29.411 26.390 12.751 1.00 23.70 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ALA ALA GLN LYS GLU ASP THR THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 6.43 6.04 5.71 5.53 8.34 10.89 10.70 7.02 3.76 </line>
<line>THR CA 8.71 8.42 6.28 4.00 5.51 7.35 7.11 3.80 </line>
<line>ASP CA 10.37 11.05 8.66 6.51 5.50 5.35 3.91 </line>
<line>GLU CA 14.06 14.56 11.66 8.92 6.55 3.83 </line>
<line>LYS CA 13.58 13.40 9.95 7.25 3.84 </line>
<line>GLN CA 10.67 9.87 6.24 3.81 </line>
<line>ALA CA 8.87 7.19 3.85 </line>
<line>ALA CA 5.94 3.78 </line>
<line>TRP CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>THR CA 320</line>
<line>THR CA 249</line>
<line>ASP CA 205</line>
<line>GLU CA 133</line>
<line>LYS CA 116</line>
<line>GLN CA 154</line>
<line>ALA CA 209</line>
<line>ALA CA 234</line>
<line>TRP CA 272</line>
<line>ARG CA 289</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HCF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HCFA</entryIDChain>
<sequence>TADAQGRVGWR</sequence>
<secondary-structure>EE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 688 CA THR A 101 15.944 -12.554 41.936 1.00 36.35 C </line>
<line>ATOM 695 CA ALA A 102 19.108 -14.290 43.040 1.00 43.34 C </line>
<line>ATOM 700 CA ASP A 103 22.458 -12.541 43.547 1.00 54.08 C </line>
<line>ATOM 708 CA ALA A 104 26.060 -13.524 42.709 1.00 63.62 C </line>
<line>ATOM 713 CA GLN A 105 26.270 -15.736 45.788 1.00 65.45 C </line>
<line>ATOM 722 CA GLY A 106 22.887 -17.449 45.686 1.00 60.77 C </line>
<line>ATOM 726 CA ARG A 107 20.547 -15.471 47.927 1.00 55.91 C </line>
<line>ATOM 732 CA VAL A 108 17.034 -15.436 46.438 1.00 47.44 C </line>
<line>ATOM 739 CA GLY A 109 14.668 -12.537 47.041 1.00 42.64 C </line>
<line>ATOM 743 CA TRP A 110 12.907 -9.368 45.885 1.00 38.14 C </line>
<line>ATOM 757 CA ARG A 111 15.194 -6.695 44.467 1.00 32.12 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP GLY VAL ARG GLY GLN ALA ASP ALA THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 6.43 5.91 5.26 5.46 8.10 9.29 11.47 10.19 6.71 3.77 </line>
<line>ALA CA 8.66 8.41 6.23 4.14 5.23 5.59 7.81 7.00 3.81 </line>
<line>ASP CA 9.37 10.33 8.54 6.79 5.61 5.37 5.46 3.83 </line>
<line>ALA CA 12.95 14.15 12.23 9.95 7.84 5.86 3.80 </line>
<line>GLN CA 14.36 14.80 12.10 9.26 6.12 3.79 </line>
<line>GLY CA 13.28 12.84 9.67 6.24 3.80 </line>
<line>ARG CA 10.85 9.99 6.63 3.82 </line>
<line>VAL CA 9.15 7.36 3.79 </line>
<line>GLY CA 6.41 3.81 </line>
<line>TRP CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>THR CA 324</line>
<line>ALA CA 257</line>
<line>ASP CA 218</line>
<line>ALA CA 168</line>
<line>GLN CA 119</line>
<line>GLY CA 137</line>
<line>ARG CA 152</line>
<line>VAL CA 208</line>
<line>GLY CA 238</line>
<line>TRP CA 261</line>
<line>ARG CA 294</line>
</n14>
</entryChain>
<parallel>
<x>15.199000358581543</x>
<y>40.75899887084961</y>
<z>-38.89400100708008</z>
</parallel>
<rotation>
<x>0.4410000145435333</x>
<y>0.7400000095367432</y>
<z>-0.5070000290870667</z>
<x>-0.6050000190734863</x>
<y>0.6629999876022339</y>
<z>0.44200000166893005</z>
<x>0.6629999876022339</x>
<y>0.1120000034570694</y>
<z>0.7400000095367432</z>
</rotation>
<rmsd>0.9125270247459412</rmsd>
<dmax>1.6302690505981445</dmax>
</indel>