NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BFOB-2V7NF
confEVID 1BFOB-2V7NF
pdbIDA 1BFO
pdbIDB 2V7N
pdbChainA B
pdbChainB F
identity 0.637600004673004
indelSize 3
alignment <alignment>
<seq1>EVKLLESGGGLVQPGGSMRLSCAGSGFTFTDFYMNWIRQPAGKAPEWLGFIRDKAKGYTTEYNPSVKGRFTISRDNTQNMLYLQMNTLRAEDTATYYCAREGHTAAPFDYWGQGVMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQ-SGLYTLTSSVTSS--TWPSQTVTCNVAHPASSTKVDKKV--</seq1>
<seq2>-VQLVESGGGLVQPGGSLRLSCAASGFTFRNSAMHWVRQAPGKGLEWVSSIWY--SGSNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARFAGGWGAYDVWGQGTLVTVSSASTKGPSVFPLAP------GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP</seq2>
<ss_1> EEEEE EEEEEEEEEEEGGG EEEEEEE EEEEEE EEEEE EEEEEEEGGGEEEEEEE GGG EEEEEEE EEEE EEEEE EEEEEEEEEEE EEEEE EEE EEE- EEEEEEEEEE -- EEEEEE EEEEE --</ss_1>
<ss_2>- EEEEE EEEEEEEEEEEGGG EEEEEEEE EEEEEEEE -- EEE EEEEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE ------ EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEE EEEEEEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BFO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BFOB</entryIDChain>
<sequence>PAVLQ-SGLYT</sequence>
<secondary-structure> EEE- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2980 CA PRO B 175 37.746 35.944 91.353 1.00 28.37 C </line>
<line>ATOM 2987 CA ALA B 176 41.353 35.463 90.285 1.00 35.03 C </line>
<line>ATOM 2992 CA VAL B 177 42.449 33.978 87.006 1.00 46.68 C </line>
<line>ATOM 2999 CA LEU B 178 45.532 31.938 86.035 1.00 45.46 C </line>
<line>ATOM 3007 CA GLN B 179 47.310 33.566 83.143 1.00 72.77 C </line>
<line>ATOM 3016 CA SER B 180 50.539 31.666 82.500 1.00 79.06 C </line>
<line>ATOM 3022 CA GLY B 181 51.284 30.611 86.083 1.00 61.57 C </line>
<line>ATOM 3026 CA LEU B 182 50.452 33.924 87.770 1.00 55.22 C </line>
<line>ATOM 3034 CA TYR B 183 47.210 35.209 89.290 1.00 45.12 C </line>
<line>ATOM 3046 CA THR B 184 45.553 38.396 88.081 1.00 36.07 C </line>
</atom-coordinate>
<distance-map>
<line> THR TYR LEU GLY SER GLN LEU VAL ALA PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 8.81 9.71 13.36 15.48 16.13 12.83 10.24 6.70 3.79 </line>
<line>ALA CA 5.58 5.95 9.56 11.82 12.63 9.49 6.92 3.76 </line>
<line>VAL CA 5.51 5.42 8.04 9.50 9.54 6.22 3.82 </line>
<line>LEU CA 6.77 4.91 5.58 5.90 6.14 3.77 </line>
<line>GLN CA 7.13 6.36 5.60 5.76 3.80 </line>
<line>SER CA 10.06 8.35 5.73 3.81 </line>
<line>GLY CA 9.87 6.93 3.81 </line>
<line>LEU CA 6.64 3.80 </line>
<line>TYR CA 3.79 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>PRO CA 217</line>
<line>ALA CA 268</line>
<line>VAL CA 217</line>
<line>LEU CA 207</line>
<line>GLN CA 168</line>
<line>SER CA 143</line>
<line>GLY CA 202</line>
<line>LEU CA 256</line>
<line>TYR CA 303</line>
<line>THR CA 298</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>PAVLQSSGLYS</sequence>
<secondary-structure> EEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 9328 CA PRO F 203 21.081 -5.127 -14.971 1.00 22.42 C </line>
<line>ATOM 9335 CA ALA F 204 17.781 -3.904 -13.536 1.00 24.54 C </line>
<line>ATOM 9340 CA VAL F 205 15.083 -2.572 -15.793 1.00 17.98 C </line>
<line>ATOM 9347 CA LEU F 206 13.075 0.485 -14.723 1.00 18.88 C </line>
<line>ATOM 9355 CA GLN F 207 9.463 -0.277 -15.632 1.00 19.53 C </line>
<line>ATOM 9364 CA SER F 208 6.920 2.401 -16.608 1.00 23.18 C </line>
<line>ATOM 9370 CA SER F 209 5.384 1.853 -13.174 1.00 16.30 C </line>
<line>ATOM 9376 CA GLY F 210 8.547 3.279 -11.622 1.00 24.29 C </line>
<line>ATOM 9380 CA LEU F 211 9.436 -0.091 -10.102 1.00 13.16 C </line>
<line>ATOM 9388 CA TYR F 212 12.533 -2.100 -10.963 1.00 19.45 C </line>
<line>ATOM 9400 CA SER F 213 12.711 -5.556 -12.515 1.00 20.75 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR LEU GLY SER SER GLN LEU VAL ALA PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 8.73 9.91 13.59 15.46 17.27 16.12 12.61 9.78 6.57 3.80 </line>
<line>ALA CA 5.43 6.12 9.80 11.85 13.67 12.93 9.31 6.54 3.76 </line>
<line>VAL CA 5.03 5.48 8.39 9.71 10.98 9.59 6.07 3.81 </line>
<line>LEU CA 6.44 4.59 5.91 6.16 7.96 6.72 3.80 </line>
<line>GLN CA 6.94 5.88 5.53 5.44 5.22 3.82 </line>
<line>SER CA 10.66 9.14 7.41 5.32 3.80 </line>
<line>SER CA 10.44 8.46 5.44 3.80 </line>
<line>GLY CA 9.81 6.73 3.80 </line>
<line>LEU CA 6.81 3.79 </line>
<line>TYR CA 3.79 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>PRO CA 226</line>
<line>ALA CA 298</line>
<line>VAL CA 253</line>
<line>LEU CA 285</line>
<line>GLN CA 216</line>
<line>SER CA 149</line>
<line>SER CA 174</line>
<line>GLY CA 254</line>
<line>LEU CA 284</line>
<line>TYR CA 334</line>
<line>SER CA 320</line>
</n14>
</entryChain>
<parallel>
<x>33.35200119018555</x>
<y>34.180999755859375</y>
<z>100.46600341796875</z>
</parallel>
<rotation>
<x>-0.7250000238418579</x>
<y>-0.16599999368190765</y>
<z>0.6690000295639038</z>
<x>0.24400000274181366</x>
<y>-0.9700000286102295</y>
<z>0.024000000208616257</z>
<x>0.6439999938011169</x>
<y>0.18000000715255737</y>
<z>0.7429999709129333</z>
</rotation>
<rmsd>0.6724439859390259</rmsd>
<dmax>1.480294942855835</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BFO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BFOB</entryIDChain>
<sequence>SVTSS--TWPSQ</sequence>
<secondary-structure>EEEE -- </secondary-structure>
<atom-coordinate>
<line>ATOM 3074 CA SER B 188 35.622 47.717 91.356 1.00 20.03 C </line>
<line>ATOM 3080 CA VAL B 189 34.035 50.332 93.553 1.00 18.85 C </line>
<line>ATOM 3087 CA THR B 190 31.554 53.157 93.040 1.00 23.80 C </line>
<line>ATOM 3094 CA SER B 191 31.698 56.806 94.069 1.00 26.00 C </line>
<line>ATOM 3100 CA SER B 192 29.443 59.833 93.719 1.00 48.43 C </line>
<line>ATOM 3106 CA THR B 193 31.587 62.884 94.490 1.00 52.46 C </line>
<line>ATOM 3113 CA TRP B 194 34.206 61.067 92.404 1.00 55.31 C </line>
<line>ATOM 3127 CA PRO B 195 37.215 63.400 92.092 1.00 42.11 C </line>
<line>ATOM 3134 CA SER B 196 36.956 65.662 95.061 1.00 56.15 C </line>
<line>ATOM 3140 CA GLN B 197 36.892 62.830 97.518 1.00 59.94 C </line>
</atom-coordinate>
<distance-map>
<line> GLN SER PRO TRP THR SER SER THR VAL SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 16.37 18.37 15.78 13.47 16.00 13.80 10.26 7.00 3.77 </line>
<line>VAL CA 13.42 15.68 13.53 10.80 12.82 10.55 6.90 3.79 </line>
<line>THR CA 11.92 13.77 11.74 8.37 9.83 7.03 3.79 </line>
<line>SER CA 8.67 10.35 8.82 5.22 6.09 3.79 </line>
<line>SER CA 8.88 9.60 8.70 5.09 3.81 </line>
<line>THR CA 6.11 6.07 6.14 3.81 </line>
<line>TRP CA 6.04 5.98 3.82 </line>
<line>PRO CA 5.47 3.74 </line>
<line>SER CA 3.75 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>SER CA 335</line>
<line>VAL CA 341</line>
<line>THR CA 301</line>
<line>SER CA 270</line>
<line>SER CA 195</line>
<line>THR CA 176</line>
<line>TRP CA 238</line>
<line>PRO CA 202</line>
<line>SER CA 138</line>
<line>GLN CA 185</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>VVTVPSSSLGTQ</sequence>
<secondary-structure>EEEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 9426 CA VAL F 217 19.729 -16.957 -14.808 1.00 20.35 C </line>
<line>ATOM 9433 CA VAL F 218 22.126 -19.905 -14.680 1.00 18.82 C </line>
<line>ATOM 9440 CA THR F 219 22.834 -22.550 -17.294 1.00 26.80 C </line>
<line>ATOM 9447 CA VAL F 220 23.243 -26.049 -15.846 1.00 30.87 C </line>
<line>ATOM 9454 CA PRO F 221 23.570 -29.657 -16.966 1.00 31.52 C </line>
<line>ATOM 9461 CA SER F 222 20.149 -31.119 -17.737 1.00 35.04 C </line>
<line>ATOM 9467 CA SER F 223 21.360 -34.146 -15.762 1.00 41.75 C </line>
<line>ATOM 9473 CA SER F 224 21.381 -31.923 -12.664 1.00 44.52 C </line>
<line>ATOM 9479 CA LEU F 225 17.641 -31.436 -13.011 1.00 40.90 C </line>
<line>ATOM 9487 CA GLY F 226 16.103 -33.826 -10.507 1.00 46.78 C </line>
<line>ATOM 9491 CA THR F 227 19.480 -34.145 -8.789 1.00 52.85 C </line>
<line>ATOM 9498 CA GLN F 228 20.761 -30.684 -7.946 1.00 38.80 C </line>
</atom-coordinate>
<distance-map>
<line> GLN THR GLY LEU SER SER SER PRO VAL THR VAL VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 15.38 18.21 17.78 14.74 15.21 17.29 14.47 13.44 9.80 6.86 3.80 </line>
<line>VAL CA 12.78 15.64 15.73 12.48 12.21 14.30 11.79 10.12 6.35 3.79 </line>
<line>THR CA 12.56 14.77 14.78 11.15 10.55 11.79 8.99 7.15 3.81 </line>
<line>VAL CA 9.49 11.38 11.83 8.27 6.94 8.31 6.23 3.79 </line>
<line>PRO CA 9.50 10.18 10.72 7.35 5.33 5.15 3.80 </line>
<line>SER CA 9.82 9.47 8.72 5.36 5.28 3.81 </line>
<line>SER CA 8.57 7.22 7.44 5.36 3.81 </line>
<line>SER CA 4.92 4.85 6.01 3.79 </line>
<line>LEU CA 6.00 5.34 3.79 </line>
<line>GLY CA 6.17 3.80 </line>
<line>THR CA 3.79 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 341</line>
<line>VAL CA 337</line>
<line>THR CA 269</line>
<line>VAL CA 258</line>
<line>PRO CA 192</line>
<line>SER CA 166</line>
<line>SER CA 142</line>
<line>SER CA 197</line>
<line>LEU CA 201</line>
<line>GLY CA 155</line>
<line>THR CA 144</line>
<line>GLN CA 215</line>
</n14>
</entryChain>
<parallel>
<x>12.342000007629395</x>
<y>83.43699645996094</y>
<z>107.56199645996094</z>
</parallel>
<rotation>
<x>-0.597000002861023</x>
<y>-0.164000004529953</y>
<z>0.7850000262260437</z>
<x>0.22699999809265137</x>
<y>-0.9739999771118164</y>
<z>-0.03099999949336052</z>
<x>0.7699999809265137</x>
<y>0.1589999943971634</y>
<z>0.6179999709129333</z>
</rotation>
<rmsd>1.335731029510498</rmsd>
<dmax>2.0094048976898193</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>SSIWY--SGSNT</sequence>
<secondary-structure>EEE -- </secondary-structure>
<atom-coordinate>
<line>ATOM 8436 CA SER F 56 27.009 23.863 -14.391 1.00 19.89 C </line>
<line>ATOM 8442 CA SER F 57 30.274 25.821 -13.910 1.00 17.16 C </line>
<line>ATOM 8448 CA ILE F 58 31.663 28.452 -11.486 1.00 22.32 C </line>
<line>ATOM 8456 CA TRP F 59 34.820 30.575 -11.842 1.00 20.03 C </line>
<line>ATOM 8470 CA TYR F 60 37.472 30.780 -9.125 1.00 34.03 C </line>
<line>ATOM 8482 CA SER F 64 35.874 33.827 -7.518 1.00 51.03 C </line>
<line>ATOM 8488 CA GLY F 65 32.247 32.680 -7.287 1.00 47.66 C </line>
<line>ATOM 8492 CA SER F 66 31.285 35.007 -10.127 1.00 48.69 C </line>
<line>ATOM 8498 CA ASN F 67 30.172 33.896 -13.610 1.00 40.72 C </line>
<line>ATOM 8506 CA THR F 68 27.876 30.962 -12.839 1.00 29.59 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASN SER GLY SER TYR TRP ILE SER SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 7.32 10.55 12.67 12.48 15.00 13.60 10.61 7.15 3.84 </line>
<line>SER CA 5.77 8.08 9.99 9.74 11.68 9.96 6.90 3.84 </line>
<line>ILE CA 4.74 6.03 6.71 5.99 7.90 6.69 3.82 </line>
<line>TRP CA 7.03 5.98 5.92 5.64 5.51 3.80 </line>
<line>TYR CA 10.29 9.12 7.56 5.86 3.80 </line>
<line>SER CA 10.02 8.34 5.41 3.81 </line>
<line>GLY CA 7.27 6.76 3.80 </line>
<line>SER CA 5.94 3.82 </line>
<line>ASN CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>SER CA 421</line>
<line>SER CA 426</line>
<line>ILE CA 378</line>
<line>TRP CA 321</line>
<line>TYR CA 306</line>
<line>SER CA 239</line>
<line>GLY CA 278</line>
<line>SER CA 205</line>
<line>ASN CA 204</line>
<line>THR CA 291</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BFO</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BFOB</entryIDChain>
<sequence>GFIRDKAKGYTT</sequence>
<secondary-structure>EEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2017 CA GLY B 49 40.574 10.461 108.353 1.00 21.26 C </line>
<line>ATOM 2021 CA PHE B 50 40.073 10.887 112.079 1.00 37.68 C </line>
<line>ATOM 2032 CA ILE B 51 41.751 10.086 115.383 1.00 34.69 C </line>
<line>ATOM 2040 CA ARG B 52 39.562 8.499 118.056 1.00 39.37 C </line>
<line>ATOM 2051 CA ASP B 53 38.586 9.290 121.726 1.00 60.88 C </line>
<line>ATOM 2059 CA LYS B 54 40.927 8.934 124.645 1.00 72.24 C </line>
<line>ATOM 2068 CA ALA B 55 38.558 6.152 125.504 1.00 57.10 C </line>
<line>ATOM 2073 CA LYS B 56 38.982 4.332 122.177 1.00 57.95 C </line>
<line>ATOM 2082 CA GLY B 57 42.727 4.772 122.562 1.00 50.00 C </line>
<line>ATOM 2086 CA TYR B 58 43.373 7.660 120.100 1.00 40.21 C </line>
<line>ATOM 2098 CA THR B 59 43.491 5.265 117.154 1.00 38.62 C </line>
<line>ATOM 2105 CA THR B 60 43.229 6.445 113.528 1.00 31.38 C </line>
</atom-coordinate>
<distance-map>
<line> THR THR TYR GLY LYS ALA LYS ASP ARG ILE PHE GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 7.07 10.63 12.40 15.46 15.21 17.80 16.37 13.57 9.95 7.14 3.78 </line>
<line>PHE CA 5.64 8.31 9.25 12.42 12.09 14.32 12.75 9.89 6.46 3.79 </line>
<line>ILE CA 4.35 5.42 5.55 8.98 9.32 11.32 9.37 7.13 3.80 </line>
<line>ARG CA 6.18 5.17 4.41 6.65 5.89 7.87 6.74 3.88 </line>
<line>ASP CA 9.84 7.82 5.31 6.19 4.99 4.91 3.76 </line>
<line>LYS CA 11.62 8.73 5.32 4.99 5.57 3.75 </line>
<line>ALA CA 12.86 9.74 7.39 5.29 3.82 </line>
<line>LYS CA 9.86 6.81 5.89 3.79 </line>
<line>GLY CA 9.20 5.48 3.85 </line>
<line>TYR CA 6.68 3.80 </line>
<line>THR CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 402</line>
<line>PHE CA 463</line>
<line>ILE CA 405</line>
<line>ARG CA 337</line>
<line>ASP CA 295</line>
<line>LYS CA 247</line>
<line>ALA CA 176</line>
<line>LYS CA 182</line>
<line>GLY CA 188</line>
<line>TYR CA 276</line>
<line>THR CA 247</line>
<line>THR CA 314</line>
</n14>
</entryChain>
<parallel>
<x>-8.123000144958496</x>
<y>21.87700080871582</y>
<z>-128.26499938964844</z>
</parallel>
<rotation>
<x>-0.7250000238418579</x>
<y>0.6570000052452087</y>
<z>-0.20600000023841858</z>
<x>0.2680000066757202</x>
<y>-0.006000000052154064</y>
<z>-0.9629999995231628</z>
<x>0.6340000033378601</x>
<y>0.7540000081062317</y>
<z>0.1720000058412552</z>
</rotation>
<rmsd>1.800379991531372</rmsd>
<dmax>2.825545072555542</dmax>
</indel>