NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BU1F-1OOTA
confEVID 1BU1F-1OOTA
pdbIDA 1BU1
pdbIDB 1OOT
pdbChainA F
pdbChainB A
identity 0.372900009155273
indelSize 2
alignment <alignment>
<seq1>-IIVVALYDYEAIHHEDLSFQKGDQMVVLEES---GEWWKARSLATRKEGYIPSNYVARV</seq1>
<seq2>SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV--NGREGIFPANYVELV</seq2>
<ss_1>- EEE EEEE --- EEEEEE EEEEE </ss_1>
<ss_2> EEE EEEE EEEEEEE-- EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1BU1F</entryIDChain>
<sequence>VLEES---GEWWK</sequence>
<secondary-structure> --- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2547 CA VAL F 107 35.079 20.992 48.247 1.00 31.91 C </line>
<line>ATOM 2554 CA LEU F 108 35.419 24.646 49.222 1.00 42.52 C </line>
<line>ATOM 2562 CA GLU F 109 31.709 25.553 48.936 1.00 54.05 C </line>
<line>ATOM 2571 CA GLU F 110 28.535 23.484 48.467 1.00 57.87 C </line>
<line>ATOM 2580 CA SER F 111 26.637 26.316 46.709 1.00 61.96 C </line>
<line>ATOM 2586 CA GLY F 112 23.928 24.048 45.249 1.00 60.50 C </line>
<line>ATOM 2590 CA GLU F 113 24.107 21.739 42.243 1.00 54.57 C </line>
<line>ATOM 2599 CA TRP F 114 27.423 23.452 41.526 1.00 44.25 C </line>
<line>ATOM 2613 CA TRP F 115 30.194 23.275 44.123 1.00 35.58 C </line>
<line>ATOM 2627 CA LYS F 116 33.406 25.237 44.401 1.00 31.07 C </line>
</atom-coordinate>
<distance-map>
<line> LYS TRP TRP GLU GLY SER GLU GLU LEU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 5.97 6.79 10.48 12.53 11.94 10.10 7.01 5.71 3.80 </line>
<line>LEU CA 5.26 7.43 11.16 13.61 12.17 9.29 7.02 3.83 </line>
<line>GLU CA 4.85 5.54 8.81 10.82 8.74 5.59 3.82 </line>
<line>GLU CA 6.58 4.65 7.03 7.84 5.65 3.84 </line>
<line>SER CA 7.23 5.35 5.97 6.88 3.82 </line>
<line>GLY CA 9.59 6.41 5.14 3.79 </line>
<line>GLU CA 10.17 6.55 3.80 </line>
<line>TRP CA 6.87 3.80 </line>
<line>TRP CA 3.77 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>VAL CA 303</line>
<line>LEU CA 244</line>
<line>GLU CA 218</line>
<line>GLU CA 220</line>
<line>SER CA 178</line>
<line>GLY CA 161</line>
<line>GLU CA 197</line>
<line>TRP CA 278</line>
<line>TRP CA 307</line>
<line>LYS CA 328</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>ILKKSDSQNDWWT</sequence>
<secondary-structure> EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 234 CA AILE A 28 27.296 7.965 -2.964 0.50 11.82 C </line>
<line>ATOM 249 CA LEU A 29 27.690 9.939 -6.177 1.00 14.24 C </line>
<line>ATOM 257 CA LYS A 30 30.764 11.959 -5.173 1.00 13.36 C </line>
<line>ATOM 266 CA LYS A 31 33.102 11.629 -2.265 1.00 15.36 C </line>
<line>ATOM 275 CA SER A 32 36.224 13.447 -1.131 1.00 14.67 C </line>
<line>ATOM 281 CA ASP A 33 39.287 12.345 0.823 1.00 17.32 C </line>
<line>ATOM 289 CA SER A 34 37.729 13.385 4.149 1.00 14.38 C </line>
<line>ATOM 295 CA GLN A 35 34.703 12.088 5.911 1.00 15.60 C </line>
<line>ATOM 304 CA ASN A 36 34.223 15.582 7.383 1.00 13.71 C </line>
<line>ATOM 312 CA ASP A 37 33.352 17.118 4.040 1.00 12.06 C </line>
<line>ATOM 321 CA ATRP A 38 30.044 17.295 2.367 0.50 9.55 C </line>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
</atom-coordinate>
<distance-map>
<line> THR TRP TRP ASP ASN GLN SER ASP SER LYS LYS LEU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.05 7.43 11.09 13.02 14.60 12.27 13.74 13.32 10.64 6.90 5.73 3.79 </line>
<line>LEU CA 5.33 7.82 11.52 13.71 16.07 14.14 14.81 13.76 10.52 6.89 3.81 </line>
<line>LYS CA 4.91 5.82 9.27 10.87 13.52 11.76 11.72 10.43 6.95 3.75 </line>
<line>LYS CA 6.59 5.04 7.93 8.36 10.49 8.34 8.10 6.95 3.79 </line>
<line>SER CA 9.42 6.84 8.08 6.96 9.00 7.33 5.49 3.80 </line>
<line>ASP CA 12.94 10.00 10.60 8.27 8.90 6.85 3.82 </line>
<line>SER CA 12.82 9.26 8.80 5.75 5.25 3.73 </line>
<line>GLN CA 11.81 8.22 7.83 5.53 3.82 </line>
<line>ASN CA 12.61 8.85 6.75 3.78 </line>
<line>ASP CA 9.86 6.20 3.71 </line>
<line>TRP CA 6.86 3.79 </line>
<line>TRP CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ILE CA 317</line>
<line>LEU CA 244</line>
<line>LYS CA 246</line>
<line>LYS CA 254</line>
<line>SER CA 192</line>
<line>ASP CA 140</line>
<line>SER CA 167</line>
<line>GLN CA 237</line>
<line>ASN CA 195</line>
<line>ASP CA 208</line>
<line>TRP CA 284</line>
<line>TRP CA 327</line>
<line>THR CA 334</line>
</n14>
</entryChain>
<parallel>
<x>-2.4820001125335693</x>
<y>10.661999702453613</y>
<z>46.814998626708984</z>
</parallel>
<rotation>
<x>-0.7350000143051147</x>
<y>0.4880000054836273</y>
<z>0.4699999988079071</z>
<x>-0.17800000309944153</x>
<y>0.531000018119812</y>
<z>-0.8289999961853027</z>
<x>-0.6539999842643738</x>
<y>-0.6930000185966492</y>
<z>-0.30300000309944153</z>
</rotation>
<rmsd>2.081804037094116</rmsd>
<dmax>4.446619033813477</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1OOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1OOTA</entryIDChain>
<sequence>WTGRV--NGREG</sequence>
<secondary-structure>EEEEE-- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 348 CA TRP A 39 29.542 14.417 -0.042 1.00 11.08 C </line>
<line>ATOM 362 CA THR A 40 26.975 14.007 -2.809 1.00 10.29 C </line>
<line>ATOM 369 CA GLY A 41 24.388 11.265 -2.771 1.00 11.54 C </line>
<line>ATOM 373 CA ARG A 42 20.849 10.134 -3.329 1.00 11.53 C </line>
<line>ATOM 384 CA VAL A 43 18.123 8.330 -1.442 1.00 10.45 C </line>
<line>ATOM 391 CA ASN A 44 14.332 8.377 -1.332 1.00 13.67 C </line>
<line>ATOM 399 CA GLY A 45 14.145 9.895 -4.799 1.00 11.79 C </line>
<line>ATOM 403 CA ARG A 46 16.115 12.989 -3.764 1.00 12.10 C </line>
<line>ATOM 414 CA GLU A 47 19.630 14.058 -4.665 1.00 12.05 C </line>
<line>ATOM 423 CA GLY A 48 21.940 16.436 -2.885 1.00 12.85 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU ARG GLY ASN VAL ARG GLY THR TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.36 10.94 14.01 16.74 16.42 13.02 10.23 6.63 3.80 </line>
<line>THR CA 5.59 7.58 10.95 13.62 13.92 10.60 7.27 3.77 </line>
<line>GLY CA 5.72 5.83 8.51 10.53 10.56 7.04 3.76 </line>
<line>ARG CA 6.41 4.32 5.55 6.87 7.04 3.77 </line>
<line>VAL CA 9.08 6.74 5.58 5.44 3.79 </line>
<line>ASN CA 11.19 8.45 5.51 3.79 </line>
<line>GLY CA 10.35 6.89 3.81 </line>
<line>ARG CA 6.83 3.78 </line>
<line>GLU CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 327</line>
<line>THR CA 334</line>
<line>GLY CA 348</line>
<line>ARG CA 299</line>
<line>VAL CA 274</line>
<line>ASN CA 200</line>
<line>GLY CA 152</line>
<line>ARG CA 213</line>
<line>GLU CA 243</line>
<line>GLY CA 271</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BU1</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1BU1F</entryIDChain>
<sequence>WKARSLATRKEG</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2613 CA TRP F 115 30.194 23.275 44.123 1.00 35.58 C </line>
<line>ATOM 2627 CA LYS F 116 33.406 25.237 44.401 1.00 31.07 C </line>
<line>ATOM 2636 CA ALA F 117 36.444 22.969 44.669 1.00 30.36 C </line>
<line>ATOM 2641 CA ARG F 118 40.215 22.665 44.471 1.00 34.66 C </line>
<line>ATOM 2652 CA SER F 119 41.973 19.786 42.721 1.00 40.21 C </line>
<line>ATOM 2658 CA LEU F 120 44.472 17.985 44.933 1.00 47.19 C </line>
<line>ATOM 2666 CA ALA F 121 46.423 16.927 41.837 1.00 52.78 C </line>
<line>ATOM 2671 CA THR F 122 46.719 19.987 39.564 1.00 59.90 C </line>
<line>ATOM 2678 CA ARG F 123 46.228 22.521 42.416 1.00 59.97 C </line>
<line>ATOM 2689 CA LYS F 124 43.809 24.647 40.277 1.00 50.89 C </line>
<line>ATOM 2698 CA GLU F 125 40.305 25.530 41.487 1.00 40.32 C </line>
<line>ATOM 2707 CA GLY F 126 36.734 26.326 40.443 1.00 32.62 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU LYS ARG THR ALA LEU SER ARG ALA LYS TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 8.10 10.69 14.21 16.14 17.45 17.58 15.25 12.36 10.05 6.28 3.77 </line>
<line>LYS CA 5.28 7.49 11.21 13.26 15.11 15.65 13.24 10.29 7.28 3.80 </line>
<line>ALA CA 5.40 5.62 8.74 10.05 11.85 12.00 9.45 6.67 3.79 </line>
<line>ARG CA 6.46 4.14 5.87 6.36 8.58 8.85 6.34 3.80 </line>
<line>SER CA 8.68 6.11 5.74 5.07 5.70 5.36 3.79 </line>
<line>LEU CA 12.23 9.28 8.15 5.48 6.15 3.81 </line>
<line>ALA CA 13.57 10.56 8.30 5.63 3.82 </line>
<line>THR CA 11.86 8.69 5.54 3.85 </line>
<line>ARG CA 10.42 6.71 3.87 </line>
<line>LYS CA 7.27 3.81 </line>
<line>GLU CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 307</line>
<line>LYS CA 328</line>
<line>ALA CA 362</line>
<line>ARG CA 304</line>
<line>SER CA 297</line>
<line>LEU CA 220</line>
<line>ALA CA 189</line>
<line>THR CA 175</line>
<line>ARG CA 177</line>
<line>LYS CA 217</line>
<line>GLU CA 289</line>
<line>GLY CA 321</line>
</n14>
</entryChain>
<parallel>
<x>-19.315000534057617</x>
<y>-11.458999633789062</y>
<z>-45.36600112915039</z>
</parallel>
<rotation>
<x>-0.8700000047683716</x>
<y>-0.3109999895095825</y>
<z>-0.382999986410141</z>
<x>-0.003000000026077032</x>
<y>0.7799999713897705</y>
<z>-0.6259999871253967</z>
<x>0.49300000071525574</x>
<y>-0.5429999828338623</y>
<z>-0.6790000200271606</z>
</rotation>
<rmsd>0.691739022731781</rmsd>
<dmax>1.3861490488052368</dmax>
</indel>