NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BFOH-2V7NF
confEVID 1BFOH-2V7NF
pdbIDA 1BFO
pdbIDB 2V7N
pdbChainA H
pdbChainB F
identity 0.637600004673004
indelSize 3
alignment <alignment>
<seq1>EVKLLESGGGLVQPGGSMRLSCAGSGFTFTDFYMNWIRQPAGKAPEWLGFIRDKAKGYTTEYNPSVKGRFTISRDNTQNMLYLQMNTLRAEDTATYYCAREGHTAAPFDYWGQGVMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQ-SGLYTLTSSVTSS--TWPSQTVTCNVAHPASSTKVDKKV--</seq1>
<seq2>-VQLVESGGGLVQPGGSLRLSCAASGFTFRNSAMHWVRQAPGKGLEWVSSIWY--SGSNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARFAGGWGAYDVWGQGTLVTVSSASTKGPSVFPLAP------GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP</seq2>
<ss_1> EEEEE EEEEEEEEEEEGGG EEEEEEE EEEEEE EEEEE EEEEEEEGGGEEEEEEE GGG EEEEEEE EEEE EEEEE EEEEEEEEEEE EEEEE EEE EEE- EEEEEEEEEE -- EEEEEE EEEEE --</ss_1>
<ss_2>- EEEEE EEEEEEEEEEEGGG EEEEEEEE EEEEEEEE -- EEE EEEEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE ------ EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEE EEEEEEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BFO</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1BFOH</entryIDChain>
<sequence>PAVLQ-SGLYT</sequence>
<secondary-structure> EEE- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 12838 CA PRO H 175 37.750 37.150 50.200 1.00 25.45 C </line>
<line>ATOM 12845 CA ALA H 176 41.363 36.688 49.201 1.00 36.20 C </line>
<line>ATOM 12850 CA VAL H 177 42.474 35.040 45.983 1.00 45.19 C </line>
<line>ATOM 12857 CA LEU H 178 45.526 32.957 44.995 1.00 45.43 C </line>
<line>ATOM 12865 CA GLN H 179 47.313 34.510 42.045 1.00 68.43 C </line>
<line>ATOM 12874 CA SER H 180 50.582 32.645 41.530 1.00 76.99 C </line>
<line>ATOM 12880 CA GLY H 181 51.304 31.708 45.139 1.00 60.26 C </line>
<line>ATOM 12884 CA LEU H 182 50.451 35.054 46.775 1.00 52.99 C </line>
<line>ATOM 12892 CA TYR H 183 47.236 36.371 48.215 1.00 41.74 C </line>
<line>ATOM 12904 CA THR H 184 45.557 39.543 46.904 1.00 29.71 C </line>
</atom-coordinate>
<distance-map>
<line> THR TYR LEU GLY SER GLN LEU VAL ALA PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 8.81 9.72 13.32 15.46 16.13 12.84 10.25 6.67 3.78 </line>
<line>ALA CA 5.57 5.96 9.55 11.84 12.66 9.56 7.00 3.78 </line>
<line>VAL CA 5.53 5.42 8.02 9.48 9.56 6.26 3.82 </line>
<line>LEU CA 6.86 4.99 5.64 5.91 6.14 3.78 </line>
<line>GLN CA 7.21 6.45 5.70 5.78 3.80 </line>
<line>SER CA 10.09 8.35 5.77 3.80 </line>
<line>GLY CA 9.88 6.91 3.82 </line>
<line>LEU CA 6.64 3.76 </line>
<line>TYR CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>PRO CA 219</line>
<line>ALA CA 269</line>
<line>VAL CA 218</line>
<line>LEU CA 213</line>
<line>GLN CA 168</line>
<line>SER CA 144</line>
<line>GLY CA 206</line>
<line>LEU CA 259</line>
<line>TYR CA 309</line>
<line>THR CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>PAVLQSSGLYS</sequence>
<secondary-structure> EEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 9328 CA PRO F 203 21.081 -5.127 -14.971 1.00 22.42 C </line>
<line>ATOM 9335 CA ALA F 204 17.781 -3.904 -13.536 1.00 24.54 C </line>
<line>ATOM 9340 CA VAL F 205 15.083 -2.572 -15.793 1.00 17.98 C </line>
<line>ATOM 9347 CA LEU F 206 13.075 0.485 -14.723 1.00 18.88 C </line>
<line>ATOM 9355 CA GLN F 207 9.463 -0.277 -15.632 1.00 19.53 C </line>
<line>ATOM 9364 CA SER F 208 6.920 2.401 -16.608 1.00 23.18 C </line>
<line>ATOM 9370 CA SER F 209 5.384 1.853 -13.174 1.00 16.30 C </line>
<line>ATOM 9376 CA GLY F 210 8.547 3.279 -11.622 1.00 24.29 C </line>
<line>ATOM 9380 CA LEU F 211 9.436 -0.091 -10.102 1.00 13.16 C </line>
<line>ATOM 9388 CA TYR F 212 12.533 -2.100 -10.963 1.00 19.45 C </line>
<line>ATOM 9400 CA SER F 213 12.711 -5.556 -12.515 1.00 20.75 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR LEU GLY SER SER GLN LEU VAL ALA PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 8.73 9.91 13.59 15.46 17.27 16.12 12.61 9.78 6.57 3.80 </line>
<line>ALA CA 5.43 6.12 9.80 11.85 13.67 12.93 9.31 6.54 3.76 </line>
<line>VAL CA 5.03 5.48 8.39 9.71 10.98 9.59 6.07 3.81 </line>
<line>LEU CA 6.44 4.59 5.91 6.16 7.96 6.72 3.80 </line>
<line>GLN CA 6.94 5.88 5.53 5.44 5.22 3.82 </line>
<line>SER CA 10.66 9.14 7.41 5.32 3.80 </line>
<line>SER CA 10.44 8.46 5.44 3.80 </line>
<line>GLY CA 9.81 6.73 3.80 </line>
<line>LEU CA 6.81 3.79 </line>
<line>TYR CA 3.79 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>PRO CA 226</line>
<line>ALA CA 298</line>
<line>VAL CA 253</line>
<line>LEU CA 285</line>
<line>GLN CA 216</line>
<line>SER CA 149</line>
<line>SER CA 174</line>
<line>GLY CA 254</line>
<line>LEU CA 284</line>
<line>TYR CA 334</line>
<line>SER CA 320</line>
</n14>
</entryChain>
<parallel>
<x>33.36399841308594</x>
<y>35.26300048828125</y>
<z>59.428001403808594</z>
</parallel>
<rotation>
<x>-0.7260000109672546</x>
<y>-0.1469999998807907</y>
<z>0.671999990940094</z>
<x>0.2460000067949295</x>
<y>-0.9679999947547913</y>
<z>0.054999999701976776</z>
<x>0.6420000195503235</x>
<y>0.20499999821186066</y>
<z>0.7379999756813049</z>
</rotation>
<rmsd>0.6730560064315796</rmsd>
<dmax>1.4589489698410034</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BFO</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1BFOH</entryIDChain>
<sequence>SVTSS--TWPSQ</sequence>
<secondary-structure>EEEE -- </secondary-structure>
<atom-coordinate>
<line>ATOM 12932 CA SER H 188 35.554 48.879 49.829 1.00 18.81 C </line>
<line>ATOM 12938 CA VAL H 189 34.035 51.609 51.904 1.00 20.06 C </line>
<line>ATOM 12945 CA THR H 190 31.532 54.403 51.367 1.00 25.14 C </line>
<line>ATOM 12952 CA SER H 191 31.655 58.064 52.290 1.00 27.01 C </line>
<line>ATOM 12958 CA SER H 192 29.412 61.076 51.830 1.00 46.65 C </line>
<line>ATOM 12964 CA THR H 193 31.548 64.135 52.509 1.00 51.72 C </line>
<line>ATOM 12971 CA TRP H 194 34.160 62.252 50.490 1.00 56.31 C </line>
<line>ATOM 12985 CA PRO H 195 37.147 64.589 50.106 1.00 44.81 C </line>
<line>ATOM 12992 CA SER H 196 36.919 66.946 52.983 1.00 55.73 C </line>
<line>ATOM 12998 CA GLN H 197 36.828 64.200 55.541 1.00 54.67 C </line>
</atom-coordinate>
<distance-map>
<line> GLN SER PRO TRP THR SER SER THR VAL SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 16.40 18.39 15.79 13.46 16.00 13.80 10.28 7.00 3.75 </line>
<line>VAL CA 13.40 15.64 13.47 10.74 12.78 10.54 6.89 3.79 </line>
<line>THR CA 11.89 13.75 11.70 8.32 9.80 7.02 3.78 </line>
<line>SER CA 8.66 10.35 8.80 5.20 6.08 3.78 </line>
<line>SER CA 8.86 9.60 8.67 5.07 3.79 </line>
<line>THR CA 6.09 6.08 6.11 3.80 </line>
<line>TRP CA 6.04 5.99 3.81 </line>
<line>PRO CA 5.46 3.73 </line>
<line>SER CA 3.75 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>SER CA 334</line>
<line>VAL CA 343</line>
<line>THR CA 301</line>
<line>SER CA 272</line>
<line>SER CA 196</line>
<line>THR CA 178</line>
<line>TRP CA 239</line>
<line>PRO CA 204</line>
<line>SER CA 136</line>
<line>GLN CA 185</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>VVTVPSSSLGTQ</sequence>
<secondary-structure>EEEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 9426 CA VAL F 217 19.729 -16.957 -14.808 1.00 20.35 C </line>
<line>ATOM 9433 CA VAL F 218 22.126 -19.905 -14.680 1.00 18.82 C </line>
<line>ATOM 9440 CA THR F 219 22.834 -22.550 -17.294 1.00 26.80 C </line>
<line>ATOM 9447 CA VAL F 220 23.243 -26.049 -15.846 1.00 30.87 C </line>
<line>ATOM 9454 CA PRO F 221 23.570 -29.657 -16.966 1.00 31.52 C </line>
<line>ATOM 9461 CA SER F 222 20.149 -31.119 -17.737 1.00 35.04 C </line>
<line>ATOM 9467 CA SER F 223 21.360 -34.146 -15.762 1.00 41.75 C </line>
<line>ATOM 9473 CA SER F 224 21.381 -31.923 -12.664 1.00 44.52 C </line>
<line>ATOM 9479 CA LEU F 225 17.641 -31.436 -13.011 1.00 40.90 C </line>
<line>ATOM 9487 CA GLY F 226 16.103 -33.826 -10.507 1.00 46.78 C </line>
<line>ATOM 9491 CA THR F 227 19.480 -34.145 -8.789 1.00 52.85 C </line>
<line>ATOM 9498 CA GLN F 228 20.761 -30.684 -7.946 1.00 38.80 C </line>
</atom-coordinate>
<distance-map>
<line> GLN THR GLY LEU SER SER SER PRO VAL THR VAL VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 15.38 18.21 17.78 14.74 15.21 17.29 14.47 13.44 9.80 6.86 3.80 </line>
<line>VAL CA 12.78 15.64 15.73 12.48 12.21 14.30 11.79 10.12 6.35 3.79 </line>
<line>THR CA 12.56 14.77 14.78 11.15 10.55 11.79 8.99 7.15 3.81 </line>
<line>VAL CA 9.49 11.38 11.83 8.27 6.94 8.31 6.23 3.79 </line>
<line>PRO CA 9.50 10.18 10.72 7.35 5.33 5.15 3.80 </line>
<line>SER CA 9.82 9.47 8.72 5.36 5.28 3.81 </line>
<line>SER CA 8.57 7.22 7.44 5.36 3.81 </line>
<line>SER CA 4.92 4.85 6.01 3.79 </line>
<line>LEU CA 6.00 5.34 3.79 </line>
<line>GLY CA 6.17 3.80 </line>
<line>THR CA 3.79 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 341</line>
<line>VAL CA 337</line>
<line>THR CA 269</line>
<line>VAL CA 258</line>
<line>PRO CA 192</line>
<line>SER CA 166</line>
<line>SER CA 142</line>
<line>SER CA 197</line>
<line>LEU CA 201</line>
<line>GLY CA 155</line>
<line>THR CA 144</line>
<line>GLN CA 215</line>
</n14>
</entryChain>
<parallel>
<x>12.302000045776367</x>
<y>84.66400146484375</y>
<z>65.76300048828125</z>
</parallel>
<rotation>
<x>-0.5950000286102295</x>
<y>-0.1420000046491623</y>
<z>0.7910000085830688</z>
<x>0.22699999809265137</x>
<y>-0.9739999771118164</y>
<z>-0.004000000189989805</z>
<x>0.7710000276565552</x>
<y>0.17800000309944153</y>
<z>0.6110000014305115</z>
</rotation>
<rmsd>1.3467539548873901</rmsd>
<dmax>2.020301103591919</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2V7N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2V7NF</entryIDChain>
<sequence>SSIWY--SGSNT</sequence>
<secondary-structure>EEE -- </secondary-structure>
<atom-coordinate>
<line>ATOM 8436 CA SER F 56 27.009 23.863 -14.391 1.00 19.89 C </line>
<line>ATOM 8442 CA SER F 57 30.274 25.821 -13.910 1.00 17.16 C </line>
<line>ATOM 8448 CA ILE F 58 31.663 28.452 -11.486 1.00 22.32 C </line>
<line>ATOM 8456 CA TRP F 59 34.820 30.575 -11.842 1.00 20.03 C </line>
<line>ATOM 8470 CA TYR F 60 37.472 30.780 -9.125 1.00 34.03 C </line>
<line>ATOM 8482 CA SER F 64 35.874 33.827 -7.518 1.00 51.03 C </line>
<line>ATOM 8488 CA GLY F 65 32.247 32.680 -7.287 1.00 47.66 C </line>
<line>ATOM 8492 CA SER F 66 31.285 35.007 -10.127 1.00 48.69 C </line>
<line>ATOM 8498 CA ASN F 67 30.172 33.896 -13.610 1.00 40.72 C </line>
<line>ATOM 8506 CA THR F 68 27.876 30.962 -12.839 1.00 29.59 C </line>
</atom-coordinate>
<distance-map>
<line> THR ASN SER GLY SER TYR TRP ILE SER SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 7.32 10.55 12.67 12.48 15.00 13.60 10.61 7.15 3.84 </line>
<line>SER CA 5.77 8.08 9.99 9.74 11.68 9.96 6.90 3.84 </line>
<line>ILE CA 4.74 6.03 6.71 5.99 7.90 6.69 3.82 </line>
<line>TRP CA 7.03 5.98 5.92 5.64 5.51 3.80 </line>
<line>TYR CA 10.29 9.12 7.56 5.86 3.80 </line>
<line>SER CA 10.02 8.34 5.41 3.81 </line>
<line>GLY CA 7.27 6.76 3.80 </line>
<line>SER CA 5.94 3.82 </line>
<line>ASN CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>SER CA 421</line>
<line>SER CA 426</line>
<line>ILE CA 378</line>
<line>TRP CA 321</line>
<line>TYR CA 306</line>
<line>SER CA 239</line>
<line>GLY CA 278</line>
<line>SER CA 205</line>
<line>ASN CA 204</line>
<line>THR CA 291</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BFO</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1BFOH</entryIDChain>
<sequence>GFIRDKAKGYTT</sequence>
<secondary-structure>EEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 11875 CA GLY H 49 40.556 11.878 67.260 1.00 15.97 C </line>
<line>ATOM 11879 CA PHE H 50 40.069 12.259 70.988 1.00 34.46 C </line>
<line>ATOM 11890 CA ILE H 51 41.758 11.355 74.267 1.00 33.51 C </line>
<line>ATOM 11898 CA ARG H 52 39.615 9.726 76.933 1.00 36.11 C </line>
<line>ATOM 11909 CA ASP H 53 38.596 10.477 80.578 1.00 61.61 C </line>
<line>ATOM 11917 CA LYS H 54 40.951 10.045 83.483 1.00 71.78 C </line>
<line>ATOM 11926 CA ALA H 55 38.565 7.227 84.284 1.00 58.08 C </line>
<line>ATOM 11931 CA LYS H 56 39.002 5.512 80.936 1.00 60.20 C </line>
<line>ATOM 11940 CA GLY H 57 42.754 5.898 81.309 1.00 49.34 C </line>
<line>ATOM 11944 CA TYR H 58 43.395 8.842 78.935 1.00 43.76 C </line>
<line>ATOM 11956 CA THR H 59 43.504 6.486 75.943 1.00 35.94 C </line>
<line>ATOM 11963 CA THR H 60 43.203 7.743 72.361 1.00 32.32 C </line>
</atom-coordinate>
<distance-map>
<line> THR THR TYR GLY LYS ALA LYS ASP ARG ILE PHE GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 7.08 10.64 12.39 15.43 15.16 17.76 16.33 13.53 9.95 7.13 3.78 </line>
<line>PHE CA 5.67 8.35 9.27 12.42 12.07 14.30 12.72 9.86 6.48 3.80 </line>
<line>ILE CA 4.33 5.44 5.55 8.96 9.29 11.29 9.34 7.11 3.79 </line>
<line>ARG CA 6.14 5.16 4.37 6.61 5.84 7.83 6.69 3.86 </line>
<line>ASP CA 9.81 7.84 5.33 6.23 4.99 4.93 3.76 </line>
<line>LYS CA 11.58 8.72 5.30 5.02 5.55 3.78 </line>
<line>ALA CA 12.80 9.72 7.39 5.31 3.79 </line>
<line>LYS CA 9.81 6.79 5.86 3.79 </line>
<line>GLY CA 9.15 5.45 3.84 </line>
<line>TYR CA 6.67 3.81 </line>
<line>THR CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 402</line>
<line>PHE CA 463</line>
<line>ILE CA 402</line>
<line>ARG CA 336</line>
<line>ASP CA 293</line>
<line>LYS CA 247</line>
<line>ALA CA 175</line>
<line>LYS CA 182</line>
<line>GLY CA 186</line>
<line>TYR CA 276</line>
<line>THR CA 244</line>
<line>THR CA 314</line>
</n14>
</entryChain>
<parallel>
<x>-8.137999534606934</x>
<y>20.631999969482422</y>
<z>-87.11100006103516</z>
</parallel>
<rotation>
<x>-0.7200000286102295</x>
<y>0.6610000133514404</y>
<z>-0.21199999749660492</z>
<x>0.25999999046325684</x>
<y>-0.026000000536441803</y>
<z>-0.9649999737739563</z>
<x>0.6430000066757202</x>
<y>0.75</y>
<z>0.15299999713897705</z>
</rotation>
<rmsd>1.7912739515304565</rmsd>
<dmax>2.811332941055298</dmax>
</indel>