NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BFTA-1NFKB
confEVID 1BFTA-1NFKB
pdbIDA 1BFT
pdbIDB 1NFK
pdbChainA A
pdbChainB B
identity 0.509400010108948
indelSize 1
alignment <alignment>
<seq1>--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-----GWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD</seq1>
<seq2>GPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE</seq2>
<ss_1>-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- EE EEEEEE GGG EEEEEE ----- EEE GGGEE EEEEEEE EEEEEEEEE EEEEEE </ss_1>
<ss_2> EEE EEGGG EEEEE EEEEEEE EEE EEEEEEEEE EEE EEEE HHHHHHHHHHHHH GGG HHHHHHHHHHHHH EEEEEEEEEEE EEEEE EEEEEE EEEEE EEEEEE EE EEEEEE EEEEEEEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BFT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BFTA</entryIDChain>
<sequence>YFTGP-----GWEAR</sequence>
<secondary-structure>EEEE ----- EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 344 CA TYR A 227 30.655 35.011 35.149 1.00 14.04 C </line>
<line>ATOM 358 CA PHE A 228 33.846 32.975 35.008 1.00 12.88 C </line>
<line>ATOM 370 CA THR A 229 36.842 35.227 35.381 1.00 13.19 C </line>
<line>ATOM 379 CA GLY A 230 40.601 34.689 35.180 1.00 9.12 C </line>
<line>ATOM 384 CA PRO A 231 43.751 36.576 34.215 1.00 14.75 C </line>
<line>ATOM 391 CA GLY A 232 42.866 38.222 30.918 1.00 20.74 C </line>
<line>ATOM 396 CA TRP A 233 39.866 35.885 30.562 1.00 19.28 C </line>
<line>ATOM 412 CA GLU A 234 36.182 35.758 31.309 1.00 19.14 C </line>
<line>ATOM 422 CA ALA A 235 33.709 33.215 29.976 1.00 15.93 C </line>
<line>ATOM 428 CA ARG A 236 30.047 32.677 30.853 1.00 17.01 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ALA GLU TRP GLY PRO GLY THR PHE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 4.93 6.27 6.77 10.33 13.32 13.22 9.95 6.20 3.79 </line>
<line>PHE CA 5.64 5.04 5.19 8.03 11.21 10.57 6.97 3.77 </line>
<line>THR CA 8.55 6.56 4.16 5.73 8.07 7.14 3.80 </line>
<line>GLY CA 11.58 8.76 5.97 4.83 5.98 3.80 </line>
<line>PRO CA 14.64 11.41 8.15 5.38 3.79 </line>
<line>GLY CA 13.97 10.48 7.13 3.82 </line>
<line>TRP CA 10.33 6.74 3.76 </line>
<line>GLU CA 6.88 3.79 </line>
<line>ALA CA 3.80 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>TYR CA 492</line>
<line>PHE CA 483</line>
<line>THR CA 366</line>
<line>GLY CA 306</line>
<line>PRO CA 190</line>
<line>GLY CA 156</line>
<line>TRP CA 247</line>
<line>GLU CA 322</line>
<line>ALA CA 372</line>
<line>ARG CA 421</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1NFK</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1NFKB</entryIDChain>
<sequence>RFYEEEENGGVWEGF</sequence>
<secondary-structure>EEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5819 CA ARG B 281 -27.261 29.275 24.051 1.00 40.83 C </line>
<line>ATOM 5836 CA PHE B 282 -28.354 32.471 25.791 1.00 44.77 C </line>
<line>ATOM 5848 CA TYR B 283 -31.332 31.687 28.122 1.00 44.08 C </line>
<line>ATOM 5862 CA GLU B 284 -33.020 32.954 31.297 1.00 25.00 C </line>
<line>ATOM 5872 CA GLU B 285 -35.186 31.880 34.226 1.00 25.00 C </line>
<line>ATOM 5882 CA GLU B 286 -38.957 32.258 33.865 1.00 25.00 C </line>
<line>ATOM 5892 CA GLU B 287 -42.311 30.541 34.435 1.00 25.00 C </line>
<line>ATOM 5902 CA ASN B 288 -44.190 27.989 32.308 1.00 25.00 C </line>
<line>ATOM 5913 CA GLY B 289 -43.824 28.330 28.548 1.00 25.00 C </line>
<line>ATOM 5918 CA GLY B 290 -41.011 28.775 26.058 1.00 25.00 C </line>
<line>ATOM 5923 CA VAL B 291 -39.917 32.338 26.781 1.00 25.00 C </line>
<line>ATOM 5931 CA TRP B 292 -36.360 33.329 25.832 1.00 58.36 C </line>
<line>ATOM 5947 CA GLU B 293 -33.697 31.163 24.258 1.00 53.82 C </line>
<line>ATOM 5957 CA GLY B 294 -31.266 32.673 21.753 1.00 49.08 C </line>
<line>ATOM 5962 CA PHE B 295 -28.249 31.183 19.952 1.00 43.94 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLY GLU TRP VAL GLY GLY ASN GLU GLU GLU GLU TYR PHE ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 4.63 5.73 6.71 10.12 13.30 13.90 17.19 18.88 18.33 15.56 13.16 9.96 6.24 3.80 </line>
<line>PHE CA 5.98 4.98 5.71 8.05 11.61 13.19 16.25 17.70 16.53 13.33 10.87 7.23 3.86 </line>
<line>TYR CA 8.75 6.45 4.56 5.76 8.71 10.32 12.94 14.02 12.72 9.56 7.22 3.81 </line>
<line>GLU CA 12.43 9.71 7.29 6.42 8.27 10.43 12.07 12.27 10.10 6.51 3.80 </line>
<line>GLU CA 15.89 13.10 10.10 8.60 8.83 10.50 10.93 9.99 7.25 3.81 </line>
<line>GLU CA 17.59 14.35 11.01 8.51 7.15 8.79 8.21 6.93 3.81 </line>
<line>GLU CA 20.20 16.95 13.35 10.83 8.22 8.66 6.47 3.82 </line>
<line>ASN CA 20.42 17.33 13.60 11.48 8.23 7.06 3.79 </line>
<line>GLY CA 18.02 14.92 11.36 9.38 5.87 3.78 </line>
<line>GLY CA 14.35 11.34 7.90 6.51 3.80 </line>
<line>VAL CA 13.57 10.01 6.81 3.81 </line>
<line>TRP CA 10.25 6.56 3.78 </line>
<line>GLU CA 6.94 3.80 </line>
<line>GLY CA 3.82 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ARG CA 494</line>
<line>PHE CA 513</line>
<line>TYR CA 419</line>
<line>GLU CA 343</line>
<line>GLU CA 247</line>
<line>GLU CA 173</line>
<line>GLU CA 101</line>
<line>ASN CA 90</line>
<line>GLY CA 117</line>
<line>GLY CA 171</line>
<line>VAL CA 230</line>
<line>TRP CA 327</line>
<line>GLU CA 374</line>
<line>GLY CA 422</line>
<line>PHE CA 439</line>
</n14>
</entryChain>
<parallel>
<x>71.21700286865234</x>
<y>3.6559998989105225</y>
<z>5.920000076293945</z>
</parallel>
<rotation>
<x>-0.6470000147819519</x>
<y>-0.4749999940395355</y>
<z>0.597000002861023</z>
<x>0.3230000138282776</x>
<y>-0.8790000081062317</y>
<z>-0.3499999940395355</z>
<x>0.6909999847412109</x>
<y>-0.032999999821186066</y>
<z>0.722000002861023</z>
</rotation>
<rmsd>1.4459480047225952</rmsd>
<dmax>2.882735013961792</dmax>
</indel>