NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BIJA-1YGDD
confEVID 1BIJA-1YGDD
pdbIDA 1BIJ
pdbIDB 1YGD
pdbChainA A
pdbChainB D
identity 0.393299996852875
indelSize 3
alignment <alignment>
<seq1>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-HG----SAQVKGHGKKVADALTNA---VAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>MHLTPEEKSAVTALWGKVN--VDEVGGEALGRLLVVYPETQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGT---FATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG - - ---- HHHHHHHHHHHHHH---GGG IIIII HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHGGG --HHHHHHHHHHHHHHH GGGGGGGG HHHHHH HHHHHHHHHHHHHHHHHH GGGHHHH--- HHHHHHHH HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BIJ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BIJA</entryIDChain>
<sequence>ALTNA---VAHVD</sequence>
<secondary-structure>HHHHH---GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 487 CA ALA A 65 -35.696 -32.835 79.188 1.00 18.33 C </line>
<line>ATOM 492 CA LEU A 66 -38.812 -33.041 81.366 1.00 17.91 C </line>
<line>ATOM 500 CA THR A 67 -40.395 -35.569 78.990 1.00 19.97 C </line>
<line>ATOM 507 CA ASN A 68 -37.206 -37.649 79.016 1.00 19.05 C </line>
<line>ATOM 515 CA ALA A 69 -37.219 -37.513 82.841 1.00 21.12 C </line>
<line>ATOM 520 CA VAL A 70 -40.825 -38.771 82.929 1.00 16.61 C </line>
<line>ATOM 527 CA ALA A 71 -40.004 -41.461 80.309 1.00 18.96 C </line>
<line>ATOM 532 CA HIS A 72 -37.186 -42.722 82.578 1.00 22.85 C </line>
<line>ATOM 542 CA VAL A 73 -38.706 -42.027 85.912 1.00 23.08 C </line>
<line>ATOM 549 CA ASP A 74 -35.986 -44.170 87.517 1.00 26.47 C </line>
</atom-coordinate>
<distance-map>
<line> ASP VAL HIS ALA VAL ALA ASN THR LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 14.07 11.78 10.56 9.71 8.69 6.13 5.05 5.44 3.81 </line>
<line>LEU CA 13.03 10.07 9.89 8.57 6.27 4.97 5.42 3.81 </line>
<line>THR CA 12.89 9.62 8.62 6.05 5.09 5.36 3.81 </line>
<line>ASN CA 10.78 8.30 6.20 4.90 5.45 3.83 </line>
<line>ALA CA 8.23 5.66 5.22 5.45 3.82 </line>
<line>VAL CA 8.58 4.90 5.38 3.84 </line>
<line>ALA CA 8.69 5.78 3.83 </line>
<line>HIS CA 5.28 3.73 </line>
<line>VAL CA 3.82 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>ALA CA 350</line>
<line>LEU CA 432</line>
<line>THR CA 331</line>
<line>ASN CA 281</line>
<line>ALA CA 330</line>
<line>VAL CA 331</line>
<line>ALA CA 235</line>
<line>HIS CA 215</line>
<line>VAL CA 288</line>
<line>ASP CA 212</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1YGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1YGDD</entryIDChain>
<sequence>AFSDGLAHLDNLK</sequence>
<secondary-structure>HHHHHH GGGHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3786 CA ALA D 70 29.408 32.882 -39.093 1.00 25.62 C </line>
<line>ATOM 3791 CA PHE D 71 29.726 29.568 -37.311 1.00 27.61 C </line>
<line>ATOM 3802 CA SER D 72 32.029 28.323 -40.074 1.00 31.47 C </line>
<line>ATOM 3808 CA ASP D 73 34.382 31.245 -39.478 1.00 35.38 C </line>
<line>ATOM 3816 CA GLY D 74 34.582 30.338 -35.809 1.00 36.64 C </line>
<line>ATOM 3820 CA LEU D 75 35.545 26.789 -36.707 1.00 38.15 C </line>
<line>ATOM 3828 CA ALA D 76 38.512 28.293 -38.486 1.00 40.35 C </line>
<line>ATOM 3833 CA HIS D 77 39.381 30.501 -35.497 1.00 42.56 C </line>
<line>ATOM 3843 CA LEU D 78 38.816 27.889 -32.750 1.00 42.36 C </line>
<line>ATOM 3851 CA ASP D 79 41.891 29.128 -30.895 1.00 41.89 C </line>
<line>ATOM 3859 CA ASN D 80 40.479 32.651 -30.589 1.00 39.80 C </line>
<line>ATOM 3867 CA LEU D 81 36.694 32.455 -30.560 1.00 36.80 C </line>
<line>ATOM 3875 CA LYS D 82 36.335 35.508 -28.303 1.00 34.49 C </line>
</atom-coordinate>
<distance-map>
<line> LYS LEU ASN ASP LEU HIS ALA LEU GLY ASP SER PHE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 13.09 11.23 13.96 15.40 12.40 10.87 10.21 8.97 6.64 5.25 5.35 3.78 </line>
<line>PHE CA 12.65 10.12 13.05 13.76 10.31 9.87 8.96 6.48 5.14 5.40 3.81 </line>
<line>SER CA 14.45 11.37 13.42 13.50 9.99 8.93 6.67 5.10 5.36 3.80 </line>
<line>ASP CA 12.12 9.29 10.87 11.60 8.73 6.43 5.17 5.37 3.78 </line>
<line>GLY CA 9.28 6.04 8.21 8.89 5.77 4.81 5.18 3.79 </line>
<line>LEU CA 12.14 8.44 9.80 8.92 5.25 5.47 3.77 </line>
<line>ALA CA 12.67 9.14 9.23 8.35 5.76 3.82 </line>
<line>HIS CA 9.28 5.95 5.47 5.42 3.83 </line>
<line>LEU CA 9.16 5.49 5.49 3.80 </line>
<line>ASP CA 8.85 6.18 3.81 </line>
<line>ASN CA 5.53 3.79 </line>
<line>LEU CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ALA CA 332</line>
<line>PHE CA 422</line>
<line>SER CA 327</line>
<line>ASP CA 264</line>
<line>GLY CA 331</line>
<line>LEU CA 349</line>
<line>ALA CA 245</line>
<line>HIS CA 237</line>
<line>LEU CA 312</line>
<line>ASP CA 227</line>
<line>ASN CA 225</line>
<line>LEU CA 286</line>
<line>LYS CA 272</line>
</n14>
</entryChain>
<parallel>
<x>-73.58200073242188</x>
<y>-67.697998046875</y>
<z>116.6520004272461</z>
</parallel>
<rotation>
<x>-0.20000000298023224</x>
<y>-0.9169999957084656</y>
<z>-0.34599998593330383</z>
<x>0.9789999723434448</x>
<y>-0.17499999701976776</y>
<z>-0.10300000011920929</z>
<x>0.03400000184774399</x>
<y>-0.35899999737739563</y>
<z>0.9330000281333923</z>
</rotation>
<rmsd>2.7454519271850586</rmsd>
<dmax>4.757552146911621</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1YGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1YGDD</entryIDChain>
<sequence>WGKVN--VDEVG</sequence>
<secondary-structure>GGG --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3367 CA TRP D 15 31.867 20.045 -41.223 1.00 26.21 C </line>
<line>ATOM 3381 CA GLY D 16 33.410 19.742 -44.672 1.00 24.67 C </line>
<line>ATOM 3385 CA LYS D 17 30.534 17.506 -45.739 1.00 22.99 C </line>
<line>ATOM 3394 CA VAL D 18 27.872 19.946 -44.603 1.00 21.25 C </line>
<line>ATOM 3401 CA ASN D 19 25.285 21.522 -46.836 1.00 20.42 C </line>
<line>ATOM 3409 CA VAL D 20 25.284 25.020 -45.411 1.00 21.32 C </line>
<line>ATOM 3416 CA ASP D 21 22.082 25.886 -47.290 1.00 21.98 C </line>
<line>ATOM 3424 CA GLU D 22 20.040 22.958 -45.872 1.00 21.31 C </line>
<line>ATOM 3433 CA VAL D 23 21.576 22.783 -42.377 1.00 19.99 C </line>
<line>ATOM 3440 CA GLY D 24 21.379 26.505 -41.753 1.00 19.39 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL GLU ASP VAL ASN VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.33 10.71 13.04 12.91 9.25 8.78 5.23 5.35 3.79 </line>
<line>GLY CA 14.11 12.43 13.80 13.15 9.72 8.59 5.54 3.80 </line>
<line>LYS CA 13.44 10.93 11.83 12.00 9.17 6.70 3.79 </line>
<line>VAL CA 9.66 7.26 8.49 8.72 5.75 3.76 </line>
<line>ASN CA 8.12 5.94 5.52 5.43 3.78 </line>
<line>VAL CA 5.55 5.29 5.65 3.81 </line>
<line>ASP CA 5.62 5.83 3.84 </line>
<line>GLU CA 5.60 3.82 </line>
<line>VAL CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 337</line>
<line>GLY CA 230</line>
<line>LYS CA 217</line>
<line>VAL CA 290</line>
<line>ASN CA 252</line>
<line>VAL CA 282</line>
<line>ASP CA 257</line>
<line>GLU CA 288</line>
<line>VAL CA 359</line>
<line>GLY CA 379</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BIJ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BIJA</entryIDChain>
<sequence>WGKVGAHAGEYG</sequence>
<secondary-structure>HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 93 CA TRP A 14 -47.693 -34.932 81.115 1.00 23.85 C </line>
<line>ATOM 107 CA GLY A 15 -49.230 -37.292 78.562 1.00 23.82 C </line>
<line>ATOM 111 CA LYS A 16 -52.274 -35.026 78.592 1.00 23.46 C </line>
<line>ATOM 120 CA VAL A 17 -49.900 -32.110 77.968 1.00 20.56 C </line>
<line>ATOM 127 CA GLY A 18 -48.934 -33.998 74.819 1.00 18.74 C </line>
<line>ATOM 131 CA ALA A 19 -47.462 -31.859 72.041 1.00 18.63 C </line>
<line>ATOM 136 CA HIS A 20 -48.144 -28.764 74.173 1.00 19.90 C </line>
<line>ATOM 146 CA ALA A 21 -44.981 -29.465 76.205 1.00 18.08 C </line>
<line>ATOM 151 CA GLY A 22 -42.736 -26.847 74.503 1.00 15.19 C </line>
<line>ATOM 155 CA GLU A 23 -45.608 -24.383 74.477 1.00 18.07 C </line>
<line>ATOM 164 CA TYR A 24 -45.772 -24.791 78.258 1.00 18.29 C </line>
<line>ATOM 176 CA GLY A 25 -42.039 -24.725 78.977 1.00 18.69 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 11.86 10.71 12.64 11.56 7.83 9.30 9.58 6.48 4.77 5.23 3.80 </line>
<line>GLY CA 14.48 12.97 14.02 12.95 9.21 9.65 8.67 4.99 5.26 3.79 </line>
<line>LYS CA 14.53 12.13 13.22 13.21 9.48 8.71 8.72 5.14 3.81 </line>
<line>VAL CA 10.83 8.41 9.50 9.54 5.86 5.36 6.41 3.80 </line>
<line>GLY CA 12.28 10.32 10.18 9.47 6.17 5.33 3.80 </line>
<line>ALA CA 11.33 9.56 8.08 7.32 5.41 3.82 </line>
<line>HIS CA 8.76 6.17 5.07 5.75 3.82 </line>
<line>ALA CA 6.23 5.17 5.40 3.85 </line>
<line>GLY CA 5.00 5.25 3.78 </line>
<line>GLU CA 5.75 3.81 </line>
<line>TYR CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 381</line>
<line>GLY CA 252</line>
<line>LYS CA 245</line>
<line>VAL CA 306</line>
<line>GLY CA 220</line>
<line>ALA CA 190</line>
<line>HIS CA 254</line>
<line>ALA CA 317</line>
<line>GLY CA 287</line>
<line>GLU CA 304</line>
<line>TYR CA 359</line>
<line>GLY CA 404</line>
</n14>
</entryChain>
<parallel>
<x>74.71600341796875</x>
<y>53.334999084472656</y>
<z>-122.23600006103516</z>
</parallel>
<rotation>
<x>0.007000000216066837</x>
<y>0.9959999918937683</y>
<z>0.09399999678134918</z>
<x>-0.9739999771118164</x>
<y>-0.014000000432133675</y>
<z>0.22599999606609344</z>
<x>0.22599999606609344</x>
<y>-0.09300000220537186</y>
<z>0.9700000286102295</z>
</rotation>
<rmsd>1.704921007156372</rmsd>
<dmax>3.7462000846862793</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1YGD</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1YGDD</entryIDChain>
<sequence>NLKGT---FATLS</sequence>
<secondary-structure>GHHHH--- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3859 CA ASN D 80 40.479 32.651 -30.589 1.00 39.80 C </line>
<line>ATOM 3867 CA LEU D 81 36.694 32.455 -30.560 1.00 36.80 C </line>
<line>ATOM 3875 CA LYS D 82 36.335 35.508 -28.303 1.00 34.49 C </line>
<line>ATOM 3884 CA GLY D 83 38.052 37.762 -30.810 1.00 31.76 C </line>
<line>ATOM 3888 CA THR D 84 36.197 36.351 -33.784 1.00 29.44 C </line>
<line>ATOM 3895 CA PHE D 85 32.702 36.972 -32.378 1.00 27.54 C </line>
<line>ATOM 3906 CA ALA D 86 33.316 40.239 -30.485 1.00 26.54 C </line>
<line>ATOM 3911 CA THR D 87 31.393 42.283 -33.048 1.00 25.57 C </line>
<line>ATOM 3918 CA LEU D 88 28.562 39.836 -33.431 1.00 24.01 C </line>
<line>ATOM 3926 CA SER D 89 28.481 40.013 -29.640 1.00 22.89 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU THR ALA PHE THR GLY LYS LEU ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 14.11 14.20 13.47 10.44 9.07 6.50 5.66 5.53 3.79 </line>
<line>LEU CA 11.20 11.35 11.44 8.49 6.30 5.08 5.48 3.81 </line>
<line>LYS CA 9.15 10.27 9.64 6.02 5.65 5.55 3.78 </line>
<line>GLY CA 9.90 10.06 8.35 5.35 5.63 3.78 </line>
<line>THR CA 9.49 8.40 7.67 5.86 3.82 </line>
<line>PHE CA 5.88 5.14 5.51 3.83 </line>
<line>ALA CA 4.91 5.61 3.80 </line>
<line>THR CA 5.02 3.76 </line>
<line>LEU CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASN CA 225</line>
<line>LEU CA 286</line>
<line>LYS CA 272</line>
<line>GLY CA 216</line>
<line>THR CA 257</line>
<line>PHE CA 319</line>
<line>ALA CA 257</line>
<line>THR CA 240</line>
<line>LEU CA 317</line>
<line>SER CA 304</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BIJ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BIJA</entryIDChain>
<sequence>HVDDMPNALSALS</sequence>
<secondary-structure>G </secondary-structure>
<atom-coordinate>
<line>ATOM 532 CA HIS A 72 -37.186 -42.722 82.578 1.00 22.85 C </line>
<line>ATOM 542 CA VAL A 73 -38.706 -42.027 85.912 1.00 23.08 C </line>
<line>ATOM 549 CA ASP A 74 -35.986 -44.170 87.517 1.00 26.47 C </line>
<line>ATOM 557 CA ASP A 75 -33.277 -41.796 86.258 1.00 27.93 C </line>
<line>ATOM 565 CA MET A 76 -33.441 -37.949 85.883 1.00 28.64 C </line>
<line>ATOM 573 CA PRO A 77 -30.492 -36.375 84.024 1.00 28.06 C </line>
<line>ATOM 580 CA ASN A 78 -28.786 -36.364 80.634 1.00 29.87 C </line>
<line>ATOM 588 CA ALA A 79 -30.199 -34.675 77.528 1.00 31.63 C </line>
<line>ATOM 593 CA LEU A 80 -29.524 -32.288 74.642 1.00 34.22 C </line>
<line>ATOM 601 CA SER A 81 -26.170 -31.266 73.171 1.00 35.23 C </line>
<line>ATOM 607 CA ALA A 82 -24.709 -30.438 76.632 1.00 29.88 C </line>
<line>ATOM 612 CA LEU A 83 -26.714 -31.333 79.833 1.00 31.59 C </line>
<line>ATOM 620 CA SER A 84 -25.559 -34.440 81.751 1.00 30.13 C </line>
</atom-coordinate>
<distance-map>
<line> SER LEU ALA SER LEU ALA ASN PRO MET ASP ASP VAL HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 14.30 15.71 18.49 18.47 15.18 11.79 10.71 9.34 6.91 5.45 5.28 3.73 </line>
<line>VAL CA 15.74 17.18 20.40 20.86 17.50 14.03 12.58 10.15 6.66 5.44 3.82 </line>
<line>ASP CA 15.38 17.60 20.84 21.65 18.67 14.95 12.66 10.16 6.92 3.82 </line>
<line>ASP CA 11.58 13.92 17.18 18.24 15.47 11.68 9.02 6.49 3.87 </line>
<line>MET CA 9.57 11.21 14.77 16.10 13.18 9.54 7.19 3.82 </line>
<line>PRO CA 5.77 7.57 11.11 12.75 10.28 6.72 3.80 </line>
<line>ASN CA 3.92 5.50 8.23 9.41 7.28 3.81 </line>
<line>ALA CA 6.28 5.35 6.99 6.84 3.81 </line>
<line>LEU CA 8.42 5.98 5.53 3.80 </line>
<line>SER CA 9.17 6.68 3.85 </line>
<line>ALA CA 6.55 3.88 </line>
<line>LEU CA 3.83 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>HIS CA 215</line>
<line>VAL CA 288</line>
<line>ASP CA 212</line>
<line>ASP CA 227</line>
<line>MET CA 312</line>
<line>PRO CA 299</line>
<line>ASN CA 261</line>
<line>ALA CA 236</line>
<line>LEU CA 188</line>
<line>SER CA 145</line>
<line>ALA CA 176</line>
<line>LEU CA 267</line>
<line>SER CA 242</line>
</n14>
</entryChain>
<parallel>
<x>68.02100372314453</x>
<y>74.61000061035156</y>
<z>-112.81900024414062</z>
</parallel>
<rotation>
<x>0.12399999797344208</x>
<y>0.984000027179718</y>
<z>0.12399999797344208</z>
<x>-0.47999998927116394</x>
<y>0.16899999976158142</y>
<z>-0.8610000014305115</z>
<x>0.8690000176429749</x>
<y>-0.04699999839067459</y>
<z>-0.49300000071525574</z>
</rotation>
<rmsd>5.802280902862549</rmsd>
<dmax>8.573470115661621</dmax>
</indel>