NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BJJA-1KVXA
confEVID 1BJJA-1KVXA
pdbIDA 1BJJ
pdbIDB 1KVX
pdbChainA A
pdbChainB A
identity 0.375999987125397
indelSize 2
alignment <alignment>
<seq1>NLLQFNKMIKEET-GKNAIPFYAFYGCYCGWGGQGKPKDGTDRCCFVHDCCYGRLVN--------CNTKSDIYSYSLKEGYITCGK-GTNCEEQICECDRVAAECFRRNLDTYNNGYMFYRDSKCTETSEEC</seq1>
<seq2>ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCARNAAICFSKV--PYNKEHKNLDKKNC-------</seq2>
<ss_1> HHHHHHHHH - EEE HHHHHHHHHHHHHH -------- EEE EEEE EEE - HHHHHHHHHHHHHHHHHHH GGG GGG GGG </ss_1>
<ss_2> HHHHHHHHHH HHHHHHHHHHHHHHHGGG HHHH EEEEE EEEEE HHHHHHHHHHHHHHHHGGG -- GGG -------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BJJA</entryIDChain>
<sequence>ITCGK-GTNCE</sequence>
<secondary-structure>EE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 575 CA ILE A 82 39.249 43.200 21.686 1.00 27.60 C </line>
<line>ATOM 583 CA THR A 83 41.591 45.705 20.017 1.00 19.87 C </line>
<line>ATOM 590 CA CYS A 84 41.263 49.502 20.151 1.00 15.76 C </line>
<line>ATOM 596 CA GLY A 85 41.232 51.287 16.839 1.00 21.26 C </line>
<line>ATOM 600 CA LYS A 86 42.964 54.535 15.920 1.00 25.43 C </line>
<line>ATOM 609 CA GLY A 88 41.195 57.831 16.601 1.00 16.52 C </line>
<line>ATOM 613 CA THR A 89 41.700 60.708 19.029 1.00 19.06 C </line>
<line>ATOM 620 CA ASN A 90 43.855 60.501 22.212 1.00 20.63 C </line>
<line>ATOM 628 CA CYS A 91 40.623 60.466 24.186 1.00 21.08 C </line>
<line>ATOM 634 CA GLU A 92 38.974 57.733 22.177 1.00 17.72 C </line>
</atom-coordinate>
<distance-map>
<line> GLU CYS ASN THR GLY LYS GLY CYS THR ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.54 17.50 17.91 17.88 15.61 13.25 9.63 6.79 3.81 </line>
<line>THR CA 12.50 15.37 15.13 15.04 12.60 9.83 6.43 3.81 </line>
<line>CYS CA 8.78 11.70 11.49 11.27 9.05 6.79 3.76 </line>
<line>GLY CA 8.67 11.77 10.98 9.68 6.55 3.79 </line>
<line>LYS CA 8.08 10.44 8.72 7.03 3.80 </line>
<line>GLY CA 6.00 8.05 6.76 3.80 </line>
<line>THR CA 5.12 5.27 3.85 </line>
<line>ASN CA 5.61 3.79 </line>
<line>CYS CA 3.77 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>THR CA 272</line>
<line>CYS CA 304</line>
<line>GLY CA 229</line>
<line>LYS CA 182</line>
<line>GLY CA 177</line>
<line>THR CA 187</line>
<line>ASN CA 211</line>
<line>CYS CA 264</line>
<line>GLU CA 302</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1KVX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1KVXA</entryIDChain>
<sequence>ITCSSENNACE</sequence>
<secondary-structure>EEEE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 632 CA ILE A 82 15.883 27.175 21.379 1.00 16.62 C </line>
<line>ATOM 640 CA THR A 83 17.880 29.093 23.964 1.00 20.40 C </line>
<line>ATOM 647 CA CYS A 84 18.795 27.387 27.264 1.00 19.92 C </line>
<line>ATOM 653 CA SER A 85 18.597 29.858 30.097 1.00 23.55 C </line>
<line>ATOM 659 CA SER A 86 21.698 31.686 31.341 1.00 22.33 C </line>
<line>ATOM 665 CA GLU A 87 20.104 31.273 34.725 1.00 23.10 C </line>
<line>ATOM 674 CA ASN A 88 20.425 27.495 34.672 1.00 19.49 C </line>
<line>ATOM 682 CA ASN A 89 23.031 26.203 37.103 1.00 20.69 C </line>
<line>ATOM 690 CA ALA A 90 25.804 23.839 35.827 1.00 18.53 C </line>
<line>ATOM 695 CA CYS A 91 23.639 20.709 36.153 1.00 16.59 C </line>
<line>ATOM 701 CA GLU A 92 20.437 22.163 34.701 1.00 13.25 C </line>
</atom-coordinate>
<distance-map>
<line> GLU CYS ALA ASN ASN GLU SER SER CYS THR ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.94 17.90 17.84 17.30 14.05 14.59 12.39 9.52 6.57 3.79 </line>
<line>THR CA 13.03 15.88 15.20 14.41 11.12 11.20 8.70 6.22 3.83 </line>
<line>CYS CA 9.24 12.13 11.62 10.78 7.59 8.51 6.60 3.76 </line>
<line>SER CA 9.15 12.07 11.00 9.06 5.46 5.07 3.81 </line>
<line>SER CA 10.18 12.14 9.93 8.06 5.50 3.76 </line>
<line>GLU CA 9.12 11.23 9.43 6.32 3.79 </line>
<line>ASN CA 5.33 7.65 6.61 3.79 </line>
<line>ASN CA 5.37 5.61 3.86 </line>
<line>ALA CA 5.73 3.82 </line>
<line>CYS CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>ILE CA 304</line>
<line>THR CA 272</line>
<line>CYS CA 308</line>
<line>SER CA 233</line>
<line>SER CA 163</line>
<line>GLU CA 155</line>
<line>ASN CA 227</line>
<line>ASN CA 216</line>
<line>ALA CA 237</line>
<line>CYS CA 307</line>
<line>GLU CA 365</line>
</n14>
</entryChain>
<parallel>
<x>21.367000579833984</x>
<y>25.066999435424805</y>
<z>-11.14900016784668</z>
</parallel>
<rotation>
<x>0.8980000019073486</x>
<y>0.3479999899864197</y>
<z>0.2680000066757202</z>
<x>0.36500000953674316</x>
<y>-0.2540000081062317</y>
<z>-0.8949999809265137</z>
<x>-0.24300000071525574</x>
<y>0.9020000100135803</y>
<z>-0.35600000619888306</z>
</rotation>
<rmsd>0.9021000266075134</rmsd>
<dmax>1.5654150247573853</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1KVX</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1KVXA</entryIDChain>
<sequence>CFSKV--PYNKE</sequence>
<secondary-structure>HGGG -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 796 CA CYS A 105 19.389 16.712 15.684 1.00 9.87 C </line>
<line>ATOM 802 CA PHE A 106 15.750 15.500 15.313 1.00 12.09 C </line>
<line>ATOM 813 CA SER A 107 15.006 18.429 13.028 1.00 15.18 C </line>
<line>ATOM 819 CA LYS A 108 17.969 17.588 10.740 1.00 16.64 C </line>
<line>ATOM 828 CA VAL A 109 17.430 13.929 9.889 1.00 16.29 C </line>
<line>ATOM 835 CA PRO A 110 14.975 11.907 7.819 1.00 17.63 C </line>
<line>ATOM 842 CA TYR A 111 12.090 10.171 9.585 1.00 18.32 C </line>
<line>ATOM 854 CA ASN A 112 11.659 6.556 8.548 1.00 20.24 C </line>
<line>ATOM 862 CA LYS A 113 8.279 5.231 9.582 1.00 24.58 C </line>
<line>ATOM 871 CA GLU A 114 9.325 1.637 8.950 1.00 26.26 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LYS ASN TYR PRO VAL LYS SER PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.34 17.10 14.62 11.54 10.22 6.72 5.22 5.40 3.85 </line>
<line>PHE CA 16.55 13.93 11.94 8.64 8.35 5.89 5.50 3.79 </line>
<line>SER CA 18.19 15.21 13.12 9.41 8.35 6.00 3.84 </line>
<line>LYS CA 18.23 15.75 12.90 9.53 7.05 3.80 </line>
<line>VAL CA 14.75 12.63 9.46 6.54 3.79 </line>
<line>PRO CA 11.78 9.62 6.34 3.80 </line>
<line>TYR CA 8.99 6.24 3.79 </line>
<line>ASN CA 5.46 3.77 </line>
<line>LYS CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>CYS CA 333</line>
<line>PHE CA 402</line>
<line>SER CA 320</line>
<line>LYS CA 237</line>
<line>VAL CA 254</line>
<line>PRO CA 228</line>
<line>TYR CA 290</line>
<line>ASN CA 238</line>
<line>LYS CA 212</line>
<line>GLU CA 201</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BJJA</entryIDChain>
<sequence>CFRRNLDTYNNG</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 735 CA CYS A 105 39.684 41.933 34.213 1.00 25.14 C </line>
<line>ATOM 741 CA PHE A 106 36.085 40.911 34.787 1.00 29.59 C </line>
<line>ATOM 752 CA ARG A 107 36.720 37.690 32.880 1.00 31.59 C </line>
<line>ATOM 763 CA ARG A 108 39.865 36.877 34.818 1.00 32.47 C </line>
<line>ATOM 774 CA ASN A 109 37.887 37.314 38.038 1.00 30.19 C </line>
<line>ATOM 782 CA LEU A 110 34.825 35.279 37.104 1.00 28.60 C </line>
<line>ATOM 790 CA ASP A 111 35.916 32.484 39.434 1.00 37.92 C </line>
<line>ATOM 798 CA THR A 112 35.578 34.705 42.501 1.00 29.00 C </line>
<line>ATOM 805 CA TYR A 113 32.428 36.492 41.336 1.00 31.47 C </line>
<line>ATOM 817 CA ASN A 114 29.999 36.716 44.252 1.00 29.17 C </line>
<line>ATOM 825 CA ASN A 115 26.270 37.155 43.635 1.00 39.61 C </line>
<line>ATOM 833 CA GLY A 116 26.047 38.263 47.240 1.00 42.95 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN ASN TYR THR ASP LEU ASN ARG ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.21 17.07 14.89 11.53 11.74 11.43 8.73 6.26 5.10 5.34 3.79 </line>
<line>PHE CA 16.21 13.74 12.01 8.71 9.91 9.62 6.22 5.17 5.53 3.80 </line>
<line>ARG CA 17.90 15.01 13.25 9.56 10.14 8.41 5.22 5.30 3.78 </line>
<line>ARG CA 18.63 16.21 13.65 9.90 9.06 7.50 5.76 3.80 </line>
<line>ASN CA 15.03 12.90 10.06 6.43 5.66 5.40 3.79 </line>
<line>LEU CA 13.74 10.93 8.74 5.01 5.48 3.80 </line>
<line>ASP CA 13.85 11.51 8.73 5.64 3.80 </line>
<line>THR CA 11.22 9.69 6.18 3.80 </line>
<line>TYR CA 8.87 6.61 3.80 </line>
<line>ASN CA 5.19 3.81 </line>
<line>ASN CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 409</line>
<line>ARG CA 324</line>
<line>ARG CA 242</line>
<line>ASN CA 289</line>
<line>LEU CA 281</line>
<line>ASP CA 193</line>
<line>THR CA 223</line>
<line>TYR CA 303</line>
<line>ASN CA 264</line>
<line>ASN CA 249</line>
<line>GLY CA 222</line>
</n14>
</entryChain>
<parallel>
<x>-20.496999740600586</x>
<y>-23.981000900268555</y>
<z>-26.527000427246094</z>
</parallel>
<rotation>
<x>0.9169999957084656</x>
<y>0.33899998664855957</y>
<z>-0.21199999749660492</z>
<x>0.3330000042915344</x>
<y>-0.35499998927116394</y>
<z>0.8730000257492065</z>
<x>0.2199999988079071</x>
<y>-0.8709999918937683</y>
<z>-0.43799999356269836</z>
</rotation>
<rmsd>0.7571510076522827</rmsd>
<dmax>1.6420120000839233</dmax>
</indel>