NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BJJC-2NOTA
confEVID 1BJJC-2NOTA
pdbIDA 1BJJ
pdbIDB 2NOT
pdbChainA C
pdbChainB A
identity 0.319999992847443
indelSize 2
alignment <alignment>
<seq1>NLLQFNKMIKEETG--KNAIPFYAFYGCYCGWGGQGKPKDGTDRCCFVHDCCYGRLVNCNTK--SDIYSYSLKEGYITCG-KGTNCEEQICECDRVAAECFRRN---LDTYNNGYMFYRDSK-CTETSEEC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKAPYNNAN-----WNIDTKKRCQ------</seq2>
<ss_1> HHHHHHHHH -- HHHHHHHHHHHHHH EEE-- EEE - HHHHHHHHHHHHHHHHHHH ---GGG GGG- </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH GGG----- HHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1BJJC</entryIDChain>
<sequence>NCNTK--SDIYS</sequence>
<secondary-structure> EEE-- E</secondary-structure>
<atom-coordinate>
<line>ATOM 2383 CA ASN C 59 26.070 81.683 17.440 1.00 38.31 C </line>
<line>ATOM 2391 CA CYS C 61 25.392 81.984 21.168 1.00 29.31 C </line>
<line>ATOM 2397 CA ASN C 67 22.541 83.843 22.827 1.00 21.93 C </line>
<line>ATOM 2405 CA THR C 68 25.018 85.897 24.786 1.00 20.94 C </line>
<line>ATOM 2412 CA LYS C 69 22.226 87.879 26.459 1.00 20.53 C </line>
<line>ATOM 2421 CA SER C 70 19.790 85.247 27.735 1.00 24.32 C </line>
<line>ATOM 2427 CA ASP C 71 21.682 81.930 27.788 1.00 19.07 C </line>
<line>ATOM 2435 CA ILE C 72 21.887 80.845 31.444 1.00 18.92 C </line>
<line>ATOM 2443 CA TYR C 73 25.261 79.476 32.524 1.00 17.83 C </line>
<line>ATOM 2455 CA SER C 74 26.541 77.979 35.732 1.00 27.90 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR ILE ASP SER LYS THR ASN CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 18.67 15.27 14.64 11.24 12.57 11.60 8.53 6.79 3.80 </line>
<line>CYS CA 15.15 11.63 10.92 7.59 9.23 8.53 5.34 3.79 </line>
<line>ASN CA 14.73 10.98 9.15 5.39 5.80 5.44 3.77 </line>
<line>THR CA 13.60 10.06 8.92 5.99 6.04 3.81 </line>
<line>LYS CA 14.23 10.80 8.63 6.12 3.81 </line>
<line>SER CA 12.74 9.28 6.13 3.82 </line>
<line>ASP CA 10.12 6.42 3.82 </line>
<line>ILE CA 6.95 3.80 </line>
<line>TYR CA 3.76 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASN CA 157</line>
<line>CYS CA 230</line>
<line>ASN CA 235</line>
<line>THR CA 301</line>
<line>LYS CA 283</line>
<line>SER CA 229</line>
<line>ASP CA 264</line>
<line>ILE CA 261</line>
<line>TYR CA 298</line>
<line>SER CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>KKGCSPKMSAYD</sequence>
<secondary-structure> HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
<line>ATOM 482 CA PRO A 68 -0.869 11.496 36.172 1.00 4.23 C </line>
<line>ATOM 489 CA LYS A 69 -2.915 8.416 35.297 1.00 11.82 C </line>
<line>ATOM 498 CA MET A 70 -5.278 10.186 32.885 1.00 20.43 C </line>
<line>ATOM 506 CA SER A 71 -2.610 12.470 31.288 1.00 7.12 C </line>
<line>ATOM 512 CA ALA A 72 -1.671 11.215 27.801 1.00 3.72 C </line>
<line>ATOM 517 CA TYR A 73 1.079 13.607 26.784 1.00 2.00 C </line>
<line>ATOM 529 CA ASP A 74 3.395 14.130 23.825 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP TYR ALA SER MET LYS PRO SER CYS GLY LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 21.18 18.01 17.64 13.95 14.18 13.54 10.75 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 18.89 15.94 16.06 12.60 13.63 13.80 10.73 8.78 5.58 3.82 </line>
<line>GLY CA 18.17 14.84 14.19 10.57 10.89 11.71 9.41 6.37 3.79 </line>
<line>CYS CA 14.78 11.36 10.77 7.13 8.13 8.76 6.06 3.82 </line>
<line>SER CA 15.14 11.41 9.69 5.91 5.25 5.35 3.86 </line>
<line>PRO CA 13.33 9.82 8.41 5.28 5.65 3.80 </line>
<line>LYS CA 14.29 10.74 8.10 5.71 3.81 </line>
<line>MET CA 13.15 9.45 6.32 3.86 </line>
<line>SER CA 9.72 5.93 3.82 </line>
<line>ALA CA 7.07 3.78 </line>
<line>TYR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
<line>PRO CA 321</line>
<line>LYS CA 267</line>
<line>MET CA 220</line>
<line>SER CA 300</line>
<line>ALA CA 276</line>
<line>TYR CA 321</line>
<line>ASP CA 287</line>
</n14>
</entryChain>
<parallel>
<x>26.496000289916992</x>
<y>68.16200256347656</y>
<z>-11.081000328063965</z>
</parallel>
<rotation>
<x>0.8939999938011169</x>
<y>-0.2669999897480011</y>
<z>0.36000001430511475</z>
<x>0.03099999949336052</x>
<y>-0.7649999856948853</y>
<z>-0.6430000066757202</z>
<x>0.44699999690055847</x>
<y>0.5860000252723694</y>
<z>-0.6759999990463257</z>
</rotation>
<rmsd>2.9161040782928467</rmsd>
<dmax>3.591017007827759</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1BJJC</entryIDChain>
<sequence>YITCG-KGTNC</sequence>
<secondary-structure> - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2509 CA TYR C 81 36.582 84.249 43.221 1.00 48.56 C </line>
<line>ATOM 2521 CA ILE C 82 34.155 84.208 40.304 1.00 32.24 C </line>
<line>ATOM 2529 CA THR C 83 34.573 80.775 38.714 1.00 30.51 C </line>
<line>ATOM 2536 CA CYS C 84 32.695 79.603 35.664 1.00 23.29 C </line>
<line>ATOM 2542 CA GLY C 85 31.258 76.116 35.799 1.00 29.81 C </line>
<line>ATOM 2546 CA LYS C 86 31.200 73.408 33.148 1.00 31.79 C </line>
<line>ATOM 2555 CA GLY C 88 28.468 73.482 30.518 1.00 22.67 C </line>
<line>ATOM 2559 CA THR C 89 28.190 74.214 26.794 1.00 26.05 C </line>
<line>ATOM 2566 CA ASN C 90 30.940 76.030 24.763 1.00 26.19 C </line>
<line>ATOM 2574 CA CYS C 91 28.538 78.984 24.669 1.00 19.64 C </line>
</atom-coordinate>
<distance-map>
<line> CYS ASN THR GLY LYS GLY CYS THR ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 20.90 20.98 21.00 18.52 15.75 12.23 9.69 6.03 3.79 </line>
<line>ILE CA 17.42 17.85 17.83 15.59 13.29 9.70 6.70 3.81 </line>
<line>THR CA 15.39 15.18 15.03 12.56 9.83 6.42 3.77 </line>
<line>CYS CA 11.77 11.61 11.31 9.05 6.85 3.77 </line>
<line>GLY CA 11.81 11.04 9.70 6.53 3.79 </line>
<line>LYS CA 10.49 8.79 7.08 3.79 </line>
<line>GLY CA 8.03 6.76 3.81 </line>
<line>THR CA 5.23 3.87 </line>
<line>ASN CA 3.81 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>TYR CA 216</line>
<line>ILE CA 299</line>
<line>THR CA 275</line>
<line>CYS CA 304</line>
<line>GLY CA 226</line>
<line>LYS CA 179</line>
<line>GLY CA 174</line>
<line>THR CA 187</line>
<line>ASN CA 212</line>
<line>CYS CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>GPYCRNIKKKC</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA GLY A 81 16.782 9.559 25.415 1.00 2.51 C </line>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.49 21.66 21.93 22.26 18.87 16.48 13.34 10.62 6.97 3.85 </line>
<line>PRO CA 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.92 5.46 3.84 </line>
<line>LYS CA 5.98 3.82 </line>
<line>LYS CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLY CA 280</line>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
</n14>
</entryChain>
<parallel>
<x>24.395000457763672</x>
<y>60.61800003051758</y>
<z>9.781999588012695</z>
</parallel>
<rotation>
<x>0.7129999995231628</x>
<y>-0.03500000014901161</y>
<z>0.699999988079071</z>
<x>0.16300000250339508</x>
<y>-0.9629999995231628</y>
<z>-0.21400000154972076</z>
<x>0.6819999814033508</x>
<y>0.2669999897480011</y>
<z>-0.6809999942779541</z>
</rotation>
<rmsd>1.4689639806747437</rmsd>
<dmax>2.6713929176330566</dmax>
</indel>