NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BJJE-2NOTA
confEVID 1BJJE-2NOTA
pdbIDA 1BJJ
pdbIDB 2NOT
pdbChainA E
pdbChainB A
identity 0.35249999165535
indelSize 3
alignment <alignment>
<seq1>NLLQFNKMIKEETG--KNAIPFYAFYGCYCGWGGQGKPKDGTDRCCFVHDCCYGRLVNCNTK--SDIYSYSLKEGYITCG-KGTNCEEQICECDRVAAECFRRNLDTYNNGYMFYRDSK-CTETSEEC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ------</seq2>
<ss_1> HHHHHHHHH -- EEE HHHHHHHHHHHHHH EEE-- EEEE EEE - HHHHHHHHHHHHHHHHHHH GGG GGG GGG- </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1BJJE</entryIDChain>
<sequence>NCNTK--SDIYS</sequence>
<secondary-structure> EEE-- E</secondary-structure>
<atom-coordinate>
<line>ATOM 4329 CA ASN E 59 35.083 73.120 20.265 1.00 36.91 C </line>
<line>ATOM 4337 CA CYS E 61 34.905 69.833 18.361 1.00 31.70 C </line>
<line>ATOM 4343 CA ASN E 67 37.645 67.803 16.702 1.00 25.50 C </line>
<line>ATOM 4351 CA THR E 68 35.638 67.886 13.477 1.00 24.69 C </line>
<line>ATOM 4358 CA LYS E 69 38.254 65.990 11.473 1.00 25.26 C </line>
<line>ATOM 4367 CA SER E 70 39.283 63.185 13.839 1.00 25.85 C </line>
<line>ATOM 4373 CA ASP E 71 36.278 62.592 16.128 1.00 18.47 C </line>
<line>ATOM 4381 CA ILE E 72 34.654 59.247 15.301 1.00 20.22 C </line>
<line>ATOM 4389 CA TYR E 73 30.860 59.367 15.237 1.00 17.34 C </line>
<line>ATOM 4401 CA SER E 74 28.135 56.783 14.777 1.00 21.36 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR ILE ASP SER LYS THR ASN CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 18.58 15.24 14.74 11.37 12.56 11.76 8.59 6.89 3.80 </line>
<line>CYS CA 15.13 11.65 11.02 7.70 9.15 8.57 5.31 3.79 </line>
<line>ASN CA 14.68 10.92 9.17 5.42 5.68 5.57 3.80 </line>
<line>THR CA 13.46 9.92 8.88 5.96 5.96 3.80 </line>
<line>LYS CA 14.07 10.62 8.55 6.09 3.81 </line>
<line>SER CA 12.89 9.35 6.25 3.82 </line>
<line>ASP CA 10.09 6.37 3.81 </line>
<line>ILE CA 6.99 3.80 </line>
<line>TYR CA 3.78 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASN CA 158</line>
<line>CYS CA 228</line>
<line>ASN CA 235</line>
<line>THR CA 306</line>
<line>LYS CA 287</line>
<line>SER CA 226</line>
<line>ASP CA 262</line>
<line>ILE CA 261</line>
<line>TYR CA 296</line>
<line>SER CA 265</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>KKGCSPKMSAYD</sequence>
<secondary-structure> HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
<line>ATOM 482 CA PRO A 68 -0.869 11.496 36.172 1.00 4.23 C </line>
<line>ATOM 489 CA LYS A 69 -2.915 8.416 35.297 1.00 11.82 C </line>
<line>ATOM 498 CA MET A 70 -5.278 10.186 32.885 1.00 20.43 C </line>
<line>ATOM 506 CA SER A 71 -2.610 12.470 31.288 1.00 7.12 C </line>
<line>ATOM 512 CA ALA A 72 -1.671 11.215 27.801 1.00 3.72 C </line>
<line>ATOM 517 CA TYR A 73 1.079 13.607 26.784 1.00 2.00 C </line>
<line>ATOM 529 CA ASP A 74 3.395 14.130 23.825 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP TYR ALA SER MET LYS PRO SER CYS GLY LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 21.18 18.01 17.64 13.95 14.18 13.54 10.75 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 18.89 15.94 16.06 12.60 13.63 13.80 10.73 8.78 5.58 3.82 </line>
<line>GLY CA 18.17 14.84 14.19 10.57 10.89 11.71 9.41 6.37 3.79 </line>
<line>CYS CA 14.78 11.36 10.77 7.13 8.13 8.76 6.06 3.82 </line>
<line>SER CA 15.14 11.41 9.69 5.91 5.25 5.35 3.86 </line>
<line>PRO CA 13.33 9.82 8.41 5.28 5.65 3.80 </line>
<line>LYS CA 14.29 10.74 8.10 5.71 3.81 </line>
<line>MET CA 13.15 9.45 6.32 3.86 </line>
<line>SER CA 9.72 5.93 3.82 </line>
<line>ALA CA 7.07 3.78 </line>
<line>TYR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
<line>PRO CA 321</line>
<line>LYS CA 267</line>
<line>MET CA 220</line>
<line>SER CA 300</line>
<line>ALA CA 276</line>
<line>TYR CA 321</line>
<line>ASP CA 287</line>
</n14>
</entryChain>
<parallel>
<x>39.887001037597656</x>
<y>50.70600128173828</y>
<z>-20.3439998626709</z>
</parallel>
<rotation>
<x>-0.9909999966621399</x>
<y>-0.03099999949336052</y>
<z>-0.12999999523162842</z>
<x>-0.13300000131130219</x>
<y>0.28299999237060547</y>
<z>0.949999988079071</z>
<x>0.007000000216066837</x>
<y>0.9589999914169312</y>
<z>-0.2840000092983246</z>
</rotation>
<rmsd>2.908673048019409</rmsd>
<dmax>3.5665760040283203</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1BJJE</entryIDChain>
<sequence>YITCG-KGTNC</sequence>
<secondary-structure>EEE - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 4455 CA TYR E 81 19.519 56.706 3.863 1.00 48.03 C </line>
<line>ATOM 4467 CA ILE E 82 22.661 58.000 5.544 1.00 29.81 C </line>
<line>ATOM 4475 CA THR E 83 21.399 58.391 9.112 1.00 30.30 C </line>
<line>ATOM 4482 CA CYS E 84 23.360 59.867 11.995 1.00 24.22 C </line>
<line>ATOM 4488 CA GLY E 85 23.446 57.801 15.161 1.00 22.42 C </line>
<line>ATOM 4492 CA LYS E 86 23.232 59.203 18.670 1.00 25.27 C </line>
<line>ATOM 4501 CA GLY E 88 26.278 60.269 20.652 1.00 24.02 C </line>
<line>ATOM 4505 CA THR E 89 27.943 63.475 21.839 1.00 20.95 C </line>
<line>ATOM 4512 CA ASN E 90 26.782 66.916 20.618 1.00 23.59 C </line>
<line>ATOM 4520 CA CYS E 91 30.033 67.021 18.634 1.00 22.82 C </line>
</atom-coordinate>
<distance-map>
<line> CYS ASN THR GLY LYS GLY CYS THR ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 20.86 20.92 20.97 18.45 15.47 12.01 9.53 5.82 3.79 </line>
<line>ILE CA 17.52 17.99 17.98 15.70 13.19 9.65 6.75 3.80 </line>
<line>THR CA 15.48 15.30 15.19 12.67 9.77 6.41 3.79 </line>
<line>CYS CA 11.82 11.65 11.44 9.14 6.71 3.78 </line>
<line>GLY CA 11.85 11.14 9.85 6.65 3.78 </line>
<line>LYS CA 10.36 8.71 7.11 3.79 </line>
<line>GLY CA 7.99 6.67 3.80 </line>
<line>THR CA 5.22 3.83 </line>
<line>ASN CA 3.81 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>TYR CA 214</line>
<line>ILE CA 303</line>
<line>THR CA 269</line>
<line>CYS CA 301</line>
<line>GLY CA 231</line>
<line>LYS CA 183</line>
<line>GLY CA 176</line>
<line>THR CA 186</line>
<line>ASN CA 210</line>
<line>CYS CA 265</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>GPYCRNIKKKC</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA GLY A 81 16.782 9.559 25.415 1.00 2.51 C </line>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.49 21.66 21.93 22.26 18.87 16.48 13.34 10.62 6.97 3.85 </line>
<line>PRO CA 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.92 5.46 3.84 </line>
<line>LYS CA 5.98 3.82 </line>
<line>LYS CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLY CA 280</line>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
</n14>
</entryChain>
<parallel>
<x>15.734999656677246</x>
<y>41.57500076293945</y>
<z>-12.383999824523926</z>
</parallel>
<rotation>
<x>-0.8429999947547913</x>
<y>-0.30000001192092896</y>
<z>-0.4480000138282776</z>
<x>-0.4449999928474426</x>
<y>-0.07999999821186066</y>
<z>0.8920000195503235</z>
<x>-0.30300000309944153</x>
<y>0.9509999752044678</y>
<z>-0.06599999964237213</z>
</rotation>
<rmsd>1.4771499633789062</rmsd>
<dmax>2.5700249671936035</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1BJJE</entryIDChain>
<sequence>CFRRNLDTYNNG</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 4627 CA CYS E 105 24.577 67.965 -1.745 1.00 23.80 C </line>
<line>ATOM 4633 CA PHE E 106 27.347 66.459 -3.881 1.00 33.11 C </line>
<line>ATOM 4644 CA ARG E 107 24.879 64.033 -5.411 1.00 33.94 C </line>
<line>ATOM 4655 CA ARG E 108 22.297 66.737 -6.046 1.00 31.28 C </line>
<line>ATOM 4666 CA ASN E 109 24.933 68.722 -7.908 1.00 28.23 C </line>
<line>ATOM 4674 CA LEU E 110 26.374 65.822 -9.907 1.00 30.67 C </line>
<line>ATOM 4682 CA ASP E 111 24.592 67.152 -12.983 1.00 32.50 C </line>
<line>ATOM 4690 CA THR E 112 26.797 70.247 -13.177 1.00 32.25 C </line>
<line>ATOM 4697 CA TYR E 113 29.994 68.659 -11.889 1.00 27.42 C </line>
<line>ATOM 4709 CA ASN E 114 32.822 69.984 -14.052 1.00 32.12 C </line>
<line>ATOM 4717 CA ASN E 115 36.041 67.988 -14.366 1.00 35.69 C </line>
<line>ATOM 4725 CA GLY E 116 37.579 71.257 -15.501 1.00 42.25 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN ASN TYR THR ASP LEU ASN ARG ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.21 17.05 14.95 11.52 11.87 11.27 8.63 6.22 5.02 5.38 3.81 </line>
<line>PHE CA 16.21 13.71 12.08 8.72 10.05 9.54 6.14 5.21 5.50 3.78 </line>
<line>ARG CA 17.76 14.85 13.16 9.46 10.13 8.19 5.06 5.31 3.79 </line>
<line>ARG CA 18.53 16.11 13.62 9.85 9.13 7.32 5.69 3.79 </line>
<line>ASN CA 14.97 12.87 10.08 6.44 5.79 5.32 3.81 </line>
<line>LEU CA 13.65 10.86 8.72 5.01 5.52 3.80 </line>
<line>ASP CA 13.85 11.56 8.77 5.71 3.81 </line>
<line>THR CA 11.08 9.59 6.09 3.79 </line>
<line>TYR CA 8.79 6.57 3.80 </line>
<line>ASN CA 5.13 3.80 </line>
<line>ASN CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 359</line>
<line>PHE CA 407</line>
<line>ARG CA 324</line>
<line>ARG CA 244</line>
<line>ASN CA 287</line>
<line>LEU CA 282</line>
<line>ASP CA 194</line>
<line>THR CA 221</line>
<line>TYR CA 301</line>
<line>ASN CA 263</line>
<line>ASN CA 249</line>
<line>GLY CA 224</line>
</n14>
</entryChain>
<parallel>
<x>-6.376999855041504</x>
<y>-64.36499786376953</y>
<z>45.95199966430664</z>
</parallel>
<rotation>
<x>-0.6460000276565552</x>
<y>-0.652999997138977</y>
<z>0.39500001072883606</z>
<x>0.18199999630451202</x>
<y>0.3700000047683716</y>
<z>0.9110000133514404</z>
<x>-0.7409999966621399</x>
<y>0.6600000262260437</y>
<z>-0.11999999731779099</z>
</rotation>
<rmsd>0.8739179968833923</rmsd>
<dmax>1.999640941619873</dmax>
</indel>