NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BJJF-2NOTA
confEVID 1BJJF-2NOTA
pdbIDA 1BJJ
pdbIDB 2NOT
pdbChainA F
pdbChainB A
identity 0.35249999165535
indelSize 3
alignment <alignment>
<seq1>NLLQFNKMIKEETG--KNAIPFYAFYGCYCGWGGQGKPKDGTDRCCFVHDCCYGRLVNCNTK--SDIYSYSLKEGYITCG-KGTNCEEQICECDRVAAECFRRNLDTYNNGYMFYRDSK-CTETSEEC</seq1>
<seq2>NLVQFSYLIQCANHGRRPT-RHYMDYGCYCGWGGSGTPVDELDRCCKIHDDCYSDAEKKGCSPKMSAYDYYCGENGPYCRNIKKKCLRFVCDCDVEAAFCFAKA--PYNNANWNIDTKKRCQ------</seq2>
<ss_1> HHHHHHHHHHH -- EEE HHHHHHHHHHHHHH EEE-- EEEE EEE - HHHHHHHHHHHHHHHHHHH GGG GGG GGG- </ss_1>
<ss_2> HHHHHHHHHH -HHHH HHHHHHHHHHHHHHHHH HHHH EEE EEE HHHHHHHHHHHHHHHHHHH -- GGG HHHH ------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1BJJF</entryIDChain>
<sequence>NCNTK--SDIYS</sequence>
<secondary-structure> EEE-- E</secondary-structure>
<atom-coordinate>
<line>ATOM 5302 CA ASN F 59 10.607 83.152 20.393 1.00 30.86 C </line>
<line>ATOM 5310 CA CYS F 61 10.912 86.638 18.904 1.00 24.96 C </line>
<line>ATOM 5316 CA ASN F 67 8.117 88.838 17.612 1.00 21.74 C </line>
<line>ATOM 5324 CA THR F 68 9.965 89.142 14.283 1.00 18.07 C </line>
<line>ATOM 5331 CA LYS F 69 7.155 91.207 12.766 1.00 25.71 C </line>
<line>ATOM 5340 CA SER F 70 6.347 93.974 15.275 1.00 18.92 C </line>
<line>ATOM 5346 CA ASP F 71 9.372 94.030 17.619 1.00 15.26 C </line>
<line>ATOM 5354 CA ILE F 72 10.928 97.502 17.160 1.00 11.95 C </line>
<line>ATOM 5362 CA TYR F 73 14.700 97.540 16.903 1.00 8.54 C </line>
<line>ATOM 5374 CA SER F 74 17.385 100.151 16.594 1.00 19.86 C </line>
</atom-coordinate>
<distance-map>
<line> SER TYR ILE ASP SER LYS THR ASN CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 18.69 15.36 14.71 11.29 12.71 11.62 8.58 6.80 3.80 </line>
<line>CYS CA 15.16 11.71 11.00 7.66 9.37 8.52 5.34 3.78 </line>
<line>ASN CA 14.66 10.93 9.12 5.34 5.91 5.48 3.82 </line>
<line>THR CA 13.48 9.99 8.89 5.95 6.12 3.80 </line>
<line>LYS CA 14.12 10.68 8.55 6.04 3.82 </line>
<line>SER CA 12.72 9.23 6.08 3.83 </line>
<line>ASP CA 10.14 6.42 3.83 </line>
<line>ILE CA 7.00 3.78 </line>
<line>TYR CA 3.76 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASN CA 157</line>
<line>CYS CA 232</line>
<line>ASN CA 242</line>
<line>THR CA 318</line>
<line>LYS CA 289</line>
<line>SER CA 234</line>
<line>ASP CA 267</line>
<line>ILE CA 262</line>
<line>TYR CA 299</line>
<line>SER CA 270</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>KKGCSPKMSAYD</sequence>
<secondary-structure> HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 448 CA LYS A 57 -2.556 19.164 43.522 1.00 2.33 C </line>
<line>ATOM 457 CA LYS A 59 -2.467 21.275 40.298 1.00 2.00 C </line>
<line>ATOM 466 CA GLY A 60 -5.399 19.295 38.860 1.00 2.00 C </line>
<line>ATOM 470 CA CYS A 61 -3.214 17.052 36.722 1.00 2.00 C </line>
<line>ATOM 476 CA SER A 67 -4.165 13.354 36.918 1.00 5.61 C </line>
<line>ATOM 482 CA PRO A 68 -0.869 11.496 36.172 1.00 4.23 C </line>
<line>ATOM 489 CA LYS A 69 -2.915 8.416 35.297 1.00 11.82 C </line>
<line>ATOM 498 CA MET A 70 -5.278 10.186 32.885 1.00 20.43 C </line>
<line>ATOM 506 CA SER A 71 -2.610 12.470 31.288 1.00 7.12 C </line>
<line>ATOM 512 CA ALA A 72 -1.671 11.215 27.801 1.00 3.72 C </line>
<line>ATOM 517 CA TYR A 73 1.079 13.607 26.784 1.00 2.00 C </line>
<line>ATOM 529 CA ASP A 74 3.395 14.130 23.825 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> ASP TYR ALA SER MET LYS PRO SER CYS GLY LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 21.18 18.01 17.64 13.95 14.18 13.54 10.75 8.94 7.15 5.46 3.85 </line>
<line>LYS CA 18.89 15.94 16.06 12.60 13.63 13.80 10.73 8.78 5.58 3.82 </line>
<line>GLY CA 18.17 14.84 14.19 10.57 10.89 11.71 9.41 6.37 3.79 </line>
<line>CYS CA 14.78 11.36 10.77 7.13 8.13 8.76 6.06 3.82 </line>
<line>SER CA 15.14 11.41 9.69 5.91 5.25 5.35 3.86 </line>
<line>PRO CA 13.33 9.82 8.41 5.28 5.65 3.80 </line>
<line>LYS CA 14.29 10.74 8.10 5.71 3.81 </line>
<line>MET CA 13.15 9.45 6.32 3.86 </line>
<line>SER CA 9.72 5.93 3.82 </line>
<line>ALA CA 7.07 3.78 </line>
<line>TYR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>LYS CA 147</line>
<line>LYS CA 167</line>
<line>GLY CA 168</line>
<line>CYS CA 246</line>
<line>SER CA 258</line>
<line>PRO CA 321</line>
<line>LYS CA 267</line>
<line>MET CA 220</line>
<line>SER CA 300</line>
<line>ALA CA 276</line>
<line>TYR CA 321</line>
<line>ASP CA 287</line>
</n14>
</entryChain>
<parallel>
<x>12.595000267028809</x>
<y>75.05899810791016</y>
<z>-19.28499984741211</z>
</parallel>
<rotation>
<x>0.9829999804496765</x>
<y>0.04500000178813934</y>
<z>-0.1770000010728836</z>
<x>0.18000000715255737</x>
<y>-0.39500001072883606</y>
<z>0.9010000228881836</z>
<x>-0.028999999165534973</x>
<y>-0.9169999957084656</y>
<z>-0.3970000147819519</z>
</rotation>
<rmsd>2.889235019683838</rmsd>
<dmax>3.5766310691833496</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1BJJF</entryIDChain>
<sequence>YITCG-KGTNC</sequence>
<secondary-structure>EEE - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 5428 CA TYR F 81 25.270 101.915 5.311 1.00 38.71 C </line>
<line>ATOM 5440 CA ILE F 82 22.347 100.323 7.112 1.00 30.09 C </line>
<line>ATOM 5448 CA THR F 83 23.756 99.373 10.511 1.00 28.95 C </line>
<line>ATOM 5455 CA CYS F 84 22.004 97.501 13.290 1.00 22.42 C </line>
<line>ATOM 5461 CA GLY F 85 22.173 99.067 16.703 1.00 17.43 C </line>
<line>ATOM 5465 CA LYS F 86 22.639 97.307 19.991 1.00 22.31 C </line>
<line>ATOM 5474 CA GLY F 88 19.623 95.829 21.788 1.00 17.75 C </line>
<line>ATOM 5478 CA THR F 89 18.059 92.506 22.764 1.00 17.24 C </line>
<line>ATOM 5485 CA ASN F 90 19.039 89.199 21.059 1.00 21.24 C </line>
<line>ATOM 5493 CA CYS F 91 15.688 89.462 19.220 1.00 21.96 C </line>
</atom-coordinate>
<distance-map>
<line> CYS ASN THR GLY LYS GLY CYS THR ILE TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 20.98 21.18 21.10 18.45 15.61 12.14 9.69 5.98 3.78 </line>
<line>ILE CA 17.58 18.14 18.01 15.59 13.23 9.67 6.80 3.80 </line>
<line>THR CA 15.47 15.40 15.16 12.52 9.77 6.40 3.78 </line>
<line>CYS CA 11.82 11.75 11.41 8.98 6.73 3.76 </line>
<line>GLY CA 11.86 11.23 9.83 6.55 3.76 </line>
<line>LYS CA 10.51 8.94 7.19 3.81 </line>
<line>GLY CA 7.91 6.70 3.80 </line>
<line>THR CA 5.24 3.85 </line>
<line>ASN CA 3.83 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>TYR CA 216</line>
<line>ILE CA 300</line>
<line>THR CA 273</line>
<line>CYS CA 300</line>
<line>GLY CA 228</line>
<line>LYS CA 182</line>
<line>GLY CA 178</line>
<line>THR CA 186</line>
<line>ASN CA 211</line>
<line>CYS CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>GPYCRNIKKKC</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 588 CA GLY A 81 16.782 9.559 25.415 1.00 2.51 C </line>
<line>ATOM 592 CA PRO A 82 13.263 11.086 25.774 1.00 2.00 C </line>
<line>ATOM 599 CA TYR A 83 12.025 14.652 25.615 1.00 2.00 C </line>
<line>ATOM 611 CA CYS A 84 8.703 16.412 26.107 1.00 2.00 C </line>
<line>ATOM 617 CA ARG A 85 6.963 18.363 23.377 1.00 5.31 C </line>
<line>ATOM 628 CA ASN A 86 4.109 20.093 25.261 1.00 3.46 C </line>
<line>ATOM 636 CA ILE A 87 4.442 23.825 25.984 1.00 2.00 C </line>
<line>ATOM 644 CA LYS A 88 0.857 25.103 26.105 1.00 10.64 C </line>
<line>ATOM 653 CA LYS A 89 -1.077 22.111 27.532 1.00 3.56 C </line>
<line>ATOM 662 CA LYS A 90 0.469 22.679 30.983 1.00 3.71 C </line>
<line>ATOM 671 CA CYS A 91 -0.675 19.578 32.934 1.00 4.58 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LYS LYS LYS ILE ASN ARG CYS TYR PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 21.49 21.66 21.93 22.26 18.87 16.48 13.34 10.62 6.97 3.85 </line>
<line>PRO CA 17.82 18.03 18.17 18.72 15.50 12.85 9.92 7.02 3.78 </line>
<line>TYR CA 15.46 15.06 15.20 15.30 11.91 9.61 6.66 3.79 </line>
<line>CYS CA 12.02 11.44 11.41 11.71 8.55 5.95 3.78 </line>
<line>ARG CA 12.29 10.89 9.80 9.49 6.56 3.83 </line>
<line>ASN CA 9.06 7.26 6.01 6.03 3.82 </line>
<line>ILE CA 9.62 6.49 5.98 3.81 </line>
<line>LYS CA 8.92 5.46 3.84 </line>
<line>LYS CA 5.98 3.82 </line>
<line>LYS CA 3.84 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>GLY CA 280</line>
<line>PRO CA 331</line>
<line>TYR CA 305</line>
<line>CYS CA 309</line>
<line>ARG CA 237</line>
<line>ASN CA 221</line>
<line>ILE CA 168</line>
<line>LYS CA 133</line>
<line>LYS CA 189</line>
<line>LYS CA 215</line>
<line>CYS CA 276</line>
</n14>
</entryChain>
<parallel>
<x>14.23900032043457</x>
<y>80.33899688720703</y>
<z>-11.055000305175781</z>
</parallel>
<rotation>
<x>0.8109999895095825</x>
<y>0.36800000071525574</y>
<z>-0.45399999618530273</z>
<x>0.503000020980835</x>
<y>-0.04600000008940697</y>
<z>0.8629999756813049</z>
<x>0.296999990940094</x>
<y>-0.9290000200271606</y>
<z>-0.22200000286102295</z>
</rotation>
<rmsd>1.4948229789733887</rmsd>
<dmax>2.685882091522217</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2NOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2NOTA</entryIDChain>
<sequence>CFAKA--PYNNA</sequence>
<secondary-structure>HHHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 779 CA CYS A 105 17.365 8.881 36.705 1.00 2.00 C </line>
<line>ATOM 785 CA PHE A 106 16.671 5.115 36.514 1.00 2.00 C </line>
<line>ATOM 796 CA ALA A 107 19.189 4.693 33.684 1.00 5.40 C </line>
<line>ATOM 801 CA LYS A 108 22.046 6.687 35.174 1.00 6.66 C </line>
<line>ATOM 810 CA ALA A 109 21.458 5.127 38.617 1.00 2.00 C </line>
<line>ATOM 815 CA PRO A 110 23.196 1.856 39.636 1.00 2.00 C </line>
<line>ATOM 822 CA TYR A 111 21.020 -1.165 40.048 1.00 2.00 C </line>
<line>ATOM 834 CA ASN A 112 21.683 -3.308 43.127 1.00 2.00 C </line>
<line>ATOM 842 CA ASN A 113 20.080 -6.685 42.302 1.00 2.00 C </line>
<line>ATOM 850 CA ALA A 114 20.191 -7.202 46.080 1.00 4.99 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASN ASN TYR PRO ALA LYS ALA PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 18.83 16.76 14.44 11.20 9.59 5.87 5.39 5.48 3.83 </line>
<line>PHE CA 15.99 13.58 11.82 8.42 7.93 5.23 5.76 3.81 </line>
<line>ALA CA 17.21 14.30 12.63 8.84 7.72 5.45 3.79 </line>
<line>LYS CA 17.76 15.28 12.78 9.30 6.68 3.83 </line>
<line>ALA CA 14.47 12.45 9.57 6.47 3.84 </line>
<line>PRO CA 11.52 9.47 6.41 3.75 </line>
<line>TYR CA 8.57 6.04 3.81 </line>
<line>ASN CA 5.11 3.83 </line>
<line>ASN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 363</line>
<line>PHE CA 434</line>
<line>ALA CA 342</line>
<line>LYS CA 272</line>
<line>ALA CA 292</line>
<line>PRO CA 255</line>
<line>TYR CA 299</line>
<line>ASN CA 255</line>
<line>ASN CA 229</line>
<line>ALA CA 202</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BJJ</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1BJJF</entryIDChain>
<sequence>CFRRNLDTYNNG</sequence>
<secondary-structure>HHHH GGG GG</secondary-structure>
<atom-coordinate>
<line>ATOM 5600 CA CYS F 105 20.120 91.298 -1.223 1.00 28.08 C </line>
<line>ATOM 5606 CA PHE F 106 17.253 92.953 -3.067 1.00 30.86 C </line>
<line>ATOM 5617 CA ARG F 107 19.576 95.661 -4.389 1.00 32.23 C </line>
<line>ATOM 5628 CA ARG F 108 22.218 93.208 -5.597 1.00 25.10 C </line>
<line>ATOM 5639 CA ASN F 109 19.495 91.477 -7.624 1.00 26.60 C </line>
<line>ATOM 5647 CA LEU F 110 17.796 94.568 -9.034 1.00 31.37 C </line>
<line>ATOM 5655 CA ASP F 111 19.291 93.660 -12.394 1.00 33.41 C </line>
<line>ATOM 5663 CA THR F 112 17.218 90.480 -12.829 1.00 22.20 C </line>
<line>ATOM 5670 CA TYR F 113 14.120 91.919 -11.221 1.00 28.68 C </line>
<line>ATOM 5682 CA ASN F 114 11.246 90.735 -13.413 1.00 36.25 C </line>
<line>ATOM 5690 CA ASN F 115 7.928 92.579 -13.256 1.00 42.20 C </line>
<line>ATOM 5698 CA GLY F 116 6.225 89.513 -14.691 1.00 46.61 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN ASN TYR THR ASP LEU ASN ARG ARG PHE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 19.43 17.18 15.09 11.68 11.99 11.45 8.78 6.43 5.21 5.42 3.79 </line>
<line>PHE CA 16.39 13.82 12.17 8.80 10.07 9.57 6.21 5.29 5.58 3.80 </line>
<line>ARG CA 17.95 14.96 13.23 9.51 10.18 8.26 5.09 5.29 3.80 </line>
<line>ARG CA 18.77 16.23 13.70 9.94 9.21 7.41 5.76 3.81 </line>
<line>ASN CA 15.16 12.91 10.10 6.48 5.77 5.25 3.80 </line>
<line>LEU CA 13.84 10.92 8.76 5.03 5.61 3.79 </line>
<line>ASP CA 13.90 11.45 8.62 5.58 3.82 </line>
<line>THR CA 11.19 9.53 6.01 3.78 </line>
<line>TYR CA 8.95 6.55 3.80 </line>
<line>ASN CA 5.32 3.80 </line>
<line>ASN CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 364</line>
<line>PHE CA 403</line>
<line>ARG CA 325</line>
<line>ARG CA 244</line>
<line>ASN CA 281</line>
<line>LEU CA 281</line>
<line>ASP CA 193</line>
<line>THR CA 222</line>
<line>TYR CA 301</line>
<line>ASN CA 263</line>
<line>ASN CA 245</line>
<line>GLY CA 219</line>
</n14>
</entryChain>
<parallel>
<x>2.6730000972747803</x>
<y>-88.73100280761719</y>
<z>45.35900115966797</z>
</parallel>
<rotation>
<x>0.6050000190734863</x>
<y>0.6990000009536743</y>
<z>-0.38100001215934753</z>
<x>-0.05700000002980232</x>
<y>-0.4390000104904175</y>
<z>-0.8970000147819519</z>
<x>-0.7940000295639038</x>
<y>0.5640000104904175</y>
<z>-0.22599999606609344</z>
</rotation>
<rmsd>0.8924980163574219</rmsd>
<dmax>2.01985502243042</dmax>
</indel>