NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BMSB-1MVBA
confEVID 1BMSB-1MVBA
pdbIDA 1BMS
pdbIDB 1MVB
pdbChainA B
pdbChainB A
identity 0.930800020694733
indelSize 2
alignment <alignment>
<seq1>ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVG-GVELNVAAWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY</seq1>
<seq2>ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYSIKVEVPKVATQTVGGVELPVA-AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY</seq2>
<ss_1> EEEE EEEE EEEGG EEEEE HHHHEEEEEEEE EEEEEEEEEEEEE - GGGEEEEEEEEEEE HHHHHHHHHHHHHH HHHH </ss_1>
<ss_2> EEEE EEEGG EEEEE EEEEEEEE EEEEEEEEEEEEEEEEEEE EEEEE - EEEEEEEEEEE HHHHHHHHHHHHHH HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BMS</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BMSB</entryIDChain>
<sequence>TQTVG-GVELN</sequence>
<secondary-structure> - </secondary-structure>
<atom-coordinate>
<line>ATOM 1481 CA THR B 69 -8.579 115.097 60.382 1.00 3.69 C </line>
<line>ATOM 1488 CA GLN B 70 -6.165 115.300 57.465 1.00 4.67 C </line>
<line>ATOM 1497 CA THR B 71 -2.522 115.826 58.380 1.00 5.65 C </line>
<line>ATOM 1504 CA VAL B 72 -1.195 118.162 55.710 1.00 3.98 C </line>
<line>ATOM 1511 CA GLY B 73 1.856 116.747 53.992 1.00 3.75 C </line>
<line>ATOM 1515 CA GLY B 74 1.664 113.614 56.070 1.00 4.68 C </line>
<line>ATOM 1519 CA VAL B 75 2.118 110.054 54.909 1.00 6.23 C </line>
<line>ATOM 1526 CA GLU B 76 -1.028 107.902 54.985 1.00 14.13 C </line>
<line>ATOM 1535 CA LEU B 77 -0.415 104.451 53.568 1.00 21.90 C </line>
<line>ATOM 1543 CA ASN B 78 -4.039 103.559 52.905 1.00 23.17 C </line>
</atom-coordinate>
<distance-map>
<line> ASN LEU GLU VAL GLY GLY VAL THR GLN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 14.48 15.05 11.74 13.03 11.21 12.35 9.26 6.42 3.79 </line>
<line>GLN CA 12.77 12.88 9.34 10.13 8.13 8.86 6.00 3.79 </line>
<line>THR CA 13.52 12.53 8.75 8.18 5.27 6.27 3.79 </line>
<line>VAL CA 15.14 13.90 10.29 8.80 5.38 3.78 </line>
<line>GLY CA 14.49 12.51 9.36 6.76 3.76 </line>
<line>GLY CA 11.99 9.72 6.41 3.77 </line>
<line>VAL CA 9.17 6.29 3.81 </line>
<line>GLU CA 5.68 3.78 </line>
<line>LEU CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>THR CA 128</line>
<line>GLN CA 194</line>
<line>THR CA 171</line>
<line>VAL CA 176</line>
<line>GLY CA 173</line>
<line>GLY CA 166</line>
<line>VAL CA 163</line>
<line>GLU CA 181</line>
<line>LEU CA 141</line>
<line>ASN CA 153</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1MVB</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1MVBA</entryIDChain>
<sequence>TQTVGGVELPV</sequence>
<secondary-structure>EEEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 513 CA THR A 69 31.271 115.722 8.484 1.00 20.45 C </line>
<line>ATOM 520 CA GLN A 70 31.678 112.322 7.021 1.00 22.37 C </line>
<line>ATOM 529 CA THR A 71 32.314 111.341 3.434 1.00 24.06 C </line>
<line>ATOM 536 CA VAL A 72 30.024 108.459 2.501 1.00 28.75 C </line>
<line>ATOM 543 CA GLY A 73 30.147 107.285 -1.118 1.00 29.11 C </line>
<line>ATOM 547 CA GLY A 74 32.172 110.349 -2.112 1.00 24.60 C </line>
<line>ATOM 551 CA VAL A 75 29.501 112.631 -0.652 1.00 21.85 C </line>
<line>ATOM 558 CA GLU A 76 29.809 114.662 2.581 1.00 23.96 C </line>
<line>ATOM 567 CA LEU A 77 27.029 114.301 5.154 1.00 13.56 C </line>
<line>ATOM 575 CA PRO A 78 26.471 116.113 8.516 1.00 12.25 C </line>
<line>ATOM 582 CA VAL A 79 26.949 113.467 11.130 1.00 11.05 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PRO LEU GLU VAL GLY GLY VAL THR GLN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 5.55 4.82 5.58 6.17 9.81 11.91 12.83 9.49 6.77 3.72 </line>
<line>GLN CA 6.37 6.61 5.39 5.36 7.98 9.36 9.69 6.17 3.77 </line>
<line>THR CA 9.62 9.10 6.30 4.25 5.13 5.64 6.47 3.80 </line>
<line>VAL CA 10.44 10.36 7.08 6.21 5.26 5.43 3.81 </line>
<line>GLY CA 14.09 13.57 9.91 8.26 5.41 3.80 </line>
<line>GLY CA 14.57 13.37 9.74 6.80 3.80 </line>
<line>VAL CA 12.08 10.26 6.53 3.83 </line>
<line>GLU CA 9.09 6.96 3.81 </line>
<line>LEU CA 6.03 3.86 </line>
<line>PRO CA 3.75 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 163</line>
<line>GLN CA 136</line>
<line>THR CA 101</line>
<line>VAL CA 91</line>
<line>GLY CA 69</line>
<line>GLY CA 70</line>
<line>VAL CA 81</line>
<line>GLU CA 110</line>
<line>LEU CA 138</line>
<line>PRO CA 182</line>
<line>VAL CA 213</line>
</n14>
</entryChain>
<parallel>
<x>-31.952999114990234</x>
<y>1.996999979019165</y>
<z>53.06100082397461</z>
</parallel>
<rotation>
<x>-0.0010000000474974513</x>
<y>0.5889999866485596</y>
<z>0.8080000281333923</z>
<x>-0.004999999888241291</x>
<y>-0.8080000281333923</y>
<z>0.5889999866485596</z>
<x>-1.0</x>
<y>0.004000000189989805</y>
<z>-0.003000000026077032</z>
</rotation>
<rmsd>2.651839017868042</rmsd>
<dmax>4.433940887451172</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1MVB</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1MVBA</entryIDChain>
<sequence>ELPVA-AWRSY</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 558 CA GLU A 76 29.809 114.662 2.581 1.00 23.96 C </line>
<line>ATOM 567 CA LEU A 77 27.029 114.301 5.154 1.00 13.56 C </line>
<line>ATOM 575 CA PRO A 78 26.471 116.113 8.516 1.00 12.25 C </line>
<line>ATOM 582 CA VAL A 79 26.949 113.467 11.130 1.00 11.05 C </line>
<line>ATOM 589 CA ALA A 80 27.746 112.902 14.834 1.00 10.28 C </line>
<line>ATOM 594 CA ALA A 81 31.111 111.149 15.419 1.00 7.80 C </line>
<line>ATOM 599 CA TRP A 82 29.664 109.865 18.707 1.00 7.25 C </line>
<line>ATOM 613 CA ARG A 83 27.094 110.746 21.328 1.00 6.50 C </line>
<line>ATOM 624 CA SER A 84 27.253 110.857 25.056 1.00 5.63 C </line>
<line>ATOM 630 CA TYR A 85 24.141 109.761 26.946 1.00 5.87 C </line>
</atom-coordinate>
<distance-map>
<line> TYR SER ARG TRP ALA ALA VAL PRO LEU GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 25.49 22.94 19.34 16.82 13.37 12.55 9.09 6.96 3.81 </line>
<line>LEU CA 22.45 20.20 16.56 14.50 11.49 9.81 6.03 3.86 </line>
<line>PRO CA 19.63 17.37 13.90 12.37 9.69 7.20 3.75 </line>
<line>VAL CA 16.49 14.17 10.56 8.82 6.41 3.83 </line>
<line>ALA CA 13.02 10.44 6.87 5.28 3.84 </line>
<line>ALA CA 13.54 10.38 7.16 3.81 </line>
<line>TRP CA 9.92 6.86 3.78 </line>
<line>ARG CA 6.42 3.73 </line>
<line>SER CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>GLU CA 110</line>
<line>LEU CA 138</line>
<line>PRO CA 182</line>
<line>VAL CA 213</line>
<line>ALA CA 229</line>
<line>ALA CA 191</line>
<line>TRP CA 180</line>
<line>ARG CA 217</line>
<line>SER CA 209</line>
<line>TYR CA 207</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1BMS</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1BMSB</entryIDChain>
<sequence>VELNVAAWRSY</sequence>
<secondary-structure> GGGEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1519 CA VAL B 75 2.118 110.054 54.909 1.00 6.23 C </line>
<line>ATOM 1526 CA GLU B 76 -1.028 107.902 54.985 1.00 14.13 C </line>
<line>ATOM 1535 CA LEU B 77 -0.415 104.451 53.568 1.00 21.90 C </line>
<line>ATOM 1543 CA ASN B 78 -4.039 103.559 52.905 1.00 23.17 C </line>
<line>ATOM 1551 CA VAL B 79 -4.635 106.251 50.307 1.00 17.48 C </line>
<line>ATOM 1558 CA ALA B 80 -8.001 104.865 49.266 1.00 9.02 C </line>
<line>ATOM 1563 CA ALA B 81 -9.404 105.665 52.691 1.00 3.46 C </line>
<line>ATOM 1568 CA TRP B 82 -8.556 109.306 52.104 1.00 2.00 C </line>
<line>ATOM 1582 CA ARG B 83 -9.902 109.944 48.584 1.00 3.83 C </line>
<line>ATOM 1593 CA SER B 84 -13.169 109.904 46.705 1.00 2.00 C </line>
<line>ATOM 1599 CA TYR B 85 -13.177 109.026 43.008 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> TYR SER ARG TRP ALA ALA VAL ASN LEU GLU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 19.41 17.35 13.58 11.06 12.53 12.70 9.01 9.17 6.29 3.81 </line>
<line>GLU CA 17.10 14.83 11.13 8.18 8.97 9.52 6.13 5.68 3.78 </line>
<line>LEU CA 17.18 15.48 12.04 9.59 9.11 8.73 5.63 3.79 </line>
<line>ASN CA 14.54 12.73 9.69 7.35 5.77 5.54 3.79 </line>
<line>VAL CA 11.57 9.96 6.66 5.29 5.36 3.79 </line>
<line>ALA CA 9.13 7.66 5.47 5.30 3.79 </line>
<line>ALA CA 10.92 8.24 5.95 3.78 </line>
<line>TRP CA 10.21 7.13 3.82 </line>
<line>ARG CA 6.53 3.77 </line>
<line>SER CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>VAL CA 163</line>
<line>GLU CA 181</line>
<line>LEU CA 141</line>
<line>ASN CA 153</line>
<line>VAL CA 213</line>
<line>ALA CA 181</line>
<line>ALA CA 183</line>
<line>TRP CA 237</line>
<line>ARG CA 263</line>
<line>SER CA 245</line>
<line>TYR CA 221</line>
</n14>
</entryChain>
<parallel>
<x>32.71699905395508</x>
<y>5.758999824523926</y>
<z>-40.29800033569336</z>
</parallel>
<rotation>
<x>-0.44699999690055847</x>
<y>0.16599999368190765</y>
<z>-0.8790000081062317</z>
<x>0.08100000023841858</x>
<y>-0.9710000157356262</y>
<z>-0.22499999403953552</z>
<x>0.890999972820282</x>
<y>0.1720000058412552</y>
<z>-0.42100000381469727</z>
</rotation>
<rmsd>3.227013111114502</rmsd>
<dmax>4.333072185516357</dmax>
</indel>