NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1BNFA-3DA7A
confEVID 1BNFA-3DA7A
pdbIDA 1BNF
pdbIDB 3DA7
pdbChainA A
pdbChainB A
identity 0.479600012302399
indelSize 1
alignment <alignment>
<seq1>--------------------------------------------VINTF-DGVADYLQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDIFSNREGKLPGKSGRCWREADINYTSGFRNSDRILYSCDWLIYKTTDHYQTFTKIR</seq1>
<seq2>RTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIRCAQVINTFDGVADYLQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGG---------------------------------DIFSNREGKLPGK-----------</seq2>
<ss_1>-------------------------------------------- H-HHHHHHHH HHHHHH HHHH EE EEEEE EEEEEE EEEEE </ss_1>
<ss_2> EEEE EEEEEE EEEEE HHHHHHHHHHHH HHHHHH HHHH EE ---------------------------------EEE -----------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1BNF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1BNFA</entryIDChain>
<sequence>VINTF-DGVAD</sequence>
<secondary-structure> H-HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1 CA VAL A 3 18.037 39.091 41.812 1.00 24.46 C </line>
<line>ATOM 8 CA ILE A 4 19.809 42.233 43.079 1.00 20.86 C </line>
<line>ATOM 16 CA ASN A 5 20.473 44.442 39.990 1.00 17.30 C </line>
<line>ATOM 24 CA THR A 6 19.158 47.893 40.903 1.00 13.86 C </line>
<line>ATOM 31 CA PHE A 7 21.262 50.982 41.685 1.00 11.02 C </line>
<line>ATOM 42 CA ASP A 8 20.188 51.037 45.335 1.00 13.98 C </line>
<line>ATOM 50 CA GLY A 9 20.243 47.286 45.848 1.00 13.56 C </line>
<line>ATOM 54 CA VAL A 10 23.726 46.731 44.544 1.00 13.86 C </line>
<line>ATOM 61 CA ALA A 11 24.856 49.928 46.279 1.00 14.74 C </line>
<line>ATOM 66 CA ASP A 12 23.521 48.834 49.678 1.00 17.13 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ALA VAL GLY ASP PHE THR ASN ILE VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 13.67 13.56 9.91 9.40 12.64 12.32 8.92 6.16 3.82 </line>
<line>ILE CA 10.04 9.74 6.14 5.78 9.10 8.98 6.10 3.86 </line>
<line>ASN CA 11.07 9.43 6.05 6.52 8.49 6.80 3.80 </line>
<line>THR CA 9.84 8.09 5.96 5.10 5.53 3.82 </line>
<line>PHE CA 8.58 5.93 5.68 5.66 3.81 </line>
<line>ASP CA 5.90 4.89 5.63 3.79 </line>
<line>GLY CA 5.27 5.33 3.76 </line>
<line>VAL CA 5.55 3.81 </line>
<line>ALA CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>VAL CA 219</line>
<line>ILE CA 283</line>
<line>ASN CA 343</line>
<line>THR CA 309</line>
<line>PHE CA 349</line>
<line>ASP CA 282</line>
<line>GLY CA 282</line>
<line>VAL CA 381</line>
<line>ALA CA 370</line>
<line>ASP CA 271</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DA7</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3DA7A</entryIDChain>
<sequence>QVINTFDGVAD</sequence>
<secondary-structure> HHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 383 CA GLN A 48 -4.071 -21.384 17.905 1.00 45.46 C </line>
<line>ATOM 392 CA VAL A 49 -1.355 -20.861 15.302 1.00 47.24 C </line>
<line>ATOM 399 CA ILE A 50 -3.388 -22.147 12.362 1.00 54.26 C </line>
<line>ATOM 407 CA ASN A 51 -2.976 -19.598 9.573 1.00 63.33 C </line>
<line>ATOM 415 CA THR A 52 -0.093 -17.491 8.260 1.00 47.09 C </line>
<line>ATOM 422 CA PHE A 53 -1.266 -14.238 9.862 1.00 40.10 C </line>
<line>ATOM 433 CA ASP A 54 -1.076 -16.134 13.166 1.00 41.55 C </line>
<line>ATOM 441 CA GLY A 55 2.245 -17.668 12.151 1.00 39.04 C </line>
<line>ATOM 445 CA VAL A 56 3.990 -14.385 11.370 1.00 30.96 C </line>
<line>ATOM 452 CA ALA A 57 2.493 -12.459 14.286 1.00 29.62 C </line>
<line>ATOM 457 CA ASP A 58 3.752 -15.094 16.737 1.00 35.20 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ALA VAL GLY ASP PHE THR ASN ILE VAL GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 10.11 11.65 12.52 9.32 7.68 11.12 11.14 8.59 5.64 3.80 </line>
<line>VAL CA 7.84 9.30 9.27 5.75 5.19 8.57 7.91 6.09 3.80 </line>
<line>ILE CA 10.95 11.50 10.75 7.20 6.49 8.56 7.03 3.80 </line>
<line>ASN CA 10.81 10.15 8.88 6.13 5.34 5.63 3.80 </line>
<line>THR CA 9.61 8.27 6.00 4.54 5.18 3.81 </line>
<line>PHE CA 8.55 6.07 5.47 5.42 3.81 </line>
<line>ASP CA 6.09 5.24 5.65 3.80 </line>
<line>GLY CA 5.47 5.64 3.80 </line>
<line>VAL CA 5.42 3.80 </line>
<line>ALA CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLN CA 116</line>
<line>VAL CA 160</line>
<line>ILE CA 131</line>
<line>ASN CA 204</line>
<line>THR CA 300</line>
<line>PHE CA 366</line>
<line>ASP CA 297</line>
<line>GLY CA 298</line>
<line>VAL CA 383</line>
<line>ALA CA 394</line>
<line>ASP CA 293</line>
</n14>
</entryChain>
<parallel>
<x>21.20199966430664</x>
<y>64.91999816894531</y>
<z>30.38800048828125</z>
</parallel>
<rotation>
<x>0.9210000038146973</x>
<y>0.023000000044703484</y>
<z>0.3889999985694885</z>
<x>-0.328000009059906</x>
<y>0.5830000042915344</y>
<z>0.7429999709129333</z>
<x>-0.20900000631809235</x>
<y>-0.8119999766349792</y>
<z>0.5450000166893005</z>
</rotation>
<rmsd>2.4723970890045166</rmsd>
<dmax>4.151544094085693</dmax>
</indel>